data_SS9 # _chem_comp.id SS9 _chem_comp.name "5-[(3-aminopropyl)amino]pentane-1-thiol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H20 N2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-05-18 _chem_comp.pdbx_modified_date 2015-07-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 176.323 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SS9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4ZUN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SS9 C2 C1 C 0 1 N N N -10.452 0.836 -28.185 -5.604 -0.391 0.005 C2 SS9 1 SS9 C3 C2 C 0 1 N N N -10.422 1.767 -26.984 -4.320 0.440 0.036 C3 SS9 2 SS9 C4 C3 C 0 1 N N N -11.355 2.958 -27.193 -3.108 -0.493 -0.005 C4 SS9 3 SS9 C6 C4 C 0 1 N N N -11.928 5.139 -26.018 -0.688 -0.559 -0.013 C6 SS9 4 SS9 C7 C5 C 0 1 N N N -11.742 5.895 -27.338 0.574 0.306 0.020 C7 SS9 5 SS9 C8 C6 C 0 1 N N N -12.421 7.263 -27.201 1.811 -0.594 -0.019 C8 SS9 6 SS9 C9 C7 C 0 1 N N N -12.191 8.218 -28.375 3.072 0.271 0.014 C9 SS9 7 SS9 C10 C8 C 0 1 N N N -13.173 9.394 -28.297 4.309 -0.630 -0.026 C10 SS9 8 SS9 N1 N1 N 0 1 N N N -9.643 -0.321 -27.845 -6.768 0.505 0.044 N1 SS9 9 SS9 N5 N2 N 0 1 N N N -11.425 3.772 -25.994 -1.875 0.305 0.025 N5 SS9 10 SS9 S11 S1 S 0 1 N N N -13.146 10.489 -29.740 5.805 0.396 0.013 S11 SS9 11 SS9 H1 H1 H 0 1 N N N -10.034 1.343 -29.067 -5.632 -0.982 -0.910 H1 SS9 12 SS9 H2 H2 H 0 1 N N N -11.486 0.525 -28.396 -5.628 -1.056 0.868 H2 SS9 13 SS9 H3 H3 H 0 1 N N N -10.742 1.212 -26.090 -4.296 1.105 -0.827 H3 SS9 14 SS9 H4 H4 H 0 1 N N N -9.396 2.135 -26.839 -4.292 1.032 0.951 H4 SS9 15 SS9 H5 H5 H 0 1 N N N -10.977 3.571 -28.024 -3.132 -1.157 0.859 H5 SS9 16 SS9 H6 H6 H 0 1 N N N -12.362 2.589 -27.438 -3.135 -1.084 -0.920 H6 SS9 17 SS9 H7 H7 H 0 1 N N N -11.409 5.704 -25.230 -0.698 -1.151 -0.928 H7 SS9 18 SS9 H8 H8 H 0 1 N N N -13.005 5.106 -25.797 -0.695 -1.224 0.851 H8 SS9 19 SS9 H9 H9 H 0 1 N N N -12.205 5.329 -28.160 0.581 0.971 -0.843 H9 SS9 20 SS9 H10 H10 H 0 1 N N N -10.670 6.029 -27.543 0.585 0.898 0.936 H10 SS9 21 SS9 H11 H11 H 0 1 N N N -12.038 7.744 -26.289 1.804 -1.260 0.844 H11 SS9 22 SS9 H12 H12 H 0 1 N N N -13.504 7.098 -27.102 1.800 -1.186 -0.934 H12 SS9 23 SS9 H13 H13 H 0 1 N N N -12.346 7.677 -29.320 3.079 0.936 -0.850 H13 SS9 24 SS9 H14 H14 H 0 1 N N N -11.161 8.601 -28.336 3.083 0.863 0.929 H14 SS9 25 SS9 H15 H15 H 0 1 N N N -12.924 9.991 -27.407 4.302 -1.295 0.837 H15 SS9 26 SS9 H16 H16 H 0 1 N N N -14.190 8.987 -28.193 4.298 -1.222 -0.941 H16 SS9 27 SS9 H17 H17 H 0 1 N N N -9.637 -0.961 -28.613 -6.735 1.174 -0.710 H17 SS9 28 SS9 H18 H18 H 0 1 N N N -8.708 -0.027 -27.648 -7.629 -0.020 0.024 H18 SS9 29 SS9 H20 H20 H 0 1 N N N -12.003 3.272 -25.349 -1.859 0.975 -0.729 H20 SS9 30 SS9 H22 H22 H 0 1 N N N -14.044 11.374 -29.425 6.796 -0.513 -0.027 H22 SS9 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SS9 S11 C10 SING N N 1 SS9 C9 C10 SING N N 2 SS9 C9 C8 SING N N 3 SS9 C2 N1 SING N N 4 SS9 C2 C3 SING N N 5 SS9 C7 C8 SING N N 6 SS9 C7 C6 SING N N 7 SS9 C4 C3 SING N N 8 SS9 C4 N5 SING N N 9 SS9 C6 N5 SING N N 10 SS9 C2 H1 SING N N 11 SS9 C2 H2 SING N N 12 SS9 C3 H3 SING N N 13 SS9 C3 H4 SING N N 14 SS9 C4 H5 SING N N 15 SS9 C4 H6 SING N N 16 SS9 C6 H7 SING N N 17 SS9 C6 H8 SING N N 18 SS9 C7 H9 SING N N 19 SS9 C7 H10 SING N N 20 SS9 C8 H11 SING N N 21 SS9 C8 H12 SING N N 22 SS9 C9 H13 SING N N 23 SS9 C9 H14 SING N N 24 SS9 C10 H15 SING N N 25 SS9 C10 H16 SING N N 26 SS9 N1 H17 SING N N 27 SS9 N1 H18 SING N N 28 SS9 N5 H20 SING N N 29 SS9 S11 H22 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SS9 SMILES ACDLabs 12.01 "C(N)CCNCCCCCS" SS9 InChI InChI 1.03 InChI=1S/C8H20N2S/c9-5-4-7-10-6-2-1-3-8-11/h10-11H,1-9H2 SS9 InChIKey InChI 1.03 UEAAWEWNMXIYCA-UHFFFAOYSA-N SS9 SMILES_CANONICAL CACTVS 3.385 NCCCNCCCCCS SS9 SMILES CACTVS 3.385 NCCCNCCCCCS SS9 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C(CCNCCCN)CCS" SS9 SMILES "OpenEye OEToolkits" 1.9.2 "C(CCNCCCN)CCS" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SS9 "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(3-aminopropyl)amino]pentane-1-thiol" SS9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "5-(3-azanylpropylamino)pentane-1-thiol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SS9 "Create component" 2015-05-18 RCSB SS9 "Initial release" 2015-07-29 RCSB #