data_SSD # _chem_comp.id SSD _chem_comp.name "1,4-DIDEOXY-1,4-[[2R,3R)-2,4-DIHYDROXY-3-(SULFOXY)BUTYL]EPISULFONIUMYLIDENE]-D-ARABINITOL INNER SALT" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H18 O9 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "DIASTEREOMER OF SALACINOL" _chem_comp.pdbx_formal_charge -2 _chem_comp.pdbx_initial_date 2004-06-22 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 334.364 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SSD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1TQT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SSD C1 C1 C 0 1 N N S 31.646 66.335 6.799 -3.284 -0.487 0.798 C1 SSD 1 SSD C2 C2 C 0 1 N N S 32.704 66.524 7.877 -3.127 0.908 1.402 C2 SSD 2 SSD C3 C3 C 0 1 N N N 32.212 65.756 9.146 -1.723 1.485 1.066 C3 SSD 3 SSD C5 C5 C 0 1 N N R 30.366 66.516 7.460 -2.490 -0.684 -0.508 C5 SSD 4 SSD S4 S4 S 1 1 N N S 30.472 65.314 8.771 -1.555 0.893 -0.675 S4 SSD 5 SSD O2 O2 O 0 1 N N N 33.853 65.912 7.331 -4.133 1.770 0.866 O2 SSD 6 SSD O1 O1 O 0 1 N N N 31.713 67.335 5.727 -2.837 -1.452 1.752 O1 SSD 7 SSD C6 C6 C 0 1 N N N 29.380 66.222 6.325 -3.439 -0.882 -1.692 C6 SSD 8 SSD O6 O6 O 0 1 N N N 28.189 66.335 7.062 -4.306 -1.987 -1.429 O6 SSD 9 SSD C7 C7 C 0 1 N N N 29.622 65.946 10.179 0.143 0.259 -0.630 C7 SSD 10 SSD C8 C8 C 0 1 N N R 29.340 65.042 11.332 1.121 1.429 -0.500 C8 SSD 11 SSD C9 C9 C 0 1 N N R 28.229 65.574 12.268 2.554 0.894 -0.462 C9 SSD 12 SSD C10 C10 C 0 1 N N N 28.032 64.699 13.496 3.532 2.063 -0.332 C10 SSD 13 SSD O10 O10 O 0 1 N N N 29.192 64.674 14.300 3.191 2.844 0.815 O10 SSD 14 SSD O8 O8 O 0 1 N N N 28.795 63.791 10.891 0.969 2.303 -1.620 O8 SSD 15 SSD O9 O9 O 0 1 N N N 28.482 66.904 12.733 2.706 0.019 0.658 O9 SSD 16 SSD S9 S9 S 0 1 N N N 27.615 68.077 12.383 2.541 -1.529 0.084 S9 SSD 17 SSD O11 O11 O -1 1 N N N 27.291 68.066 10.996 2.375 -3.078 -0.491 O11 SSD 18 SSD O12 O12 O -1 1 N N N 28.378 69.257 12.819 4.190 -1.655 -0.054 O12 SSD 19 SSD O13 O13 O -1 1 N N N 26.433 67.886 13.121 1.789 -1.973 1.496 O13 SSD 20 SSD H1 H1 H 0 1 N N N 31.798 65.334 6.333 -4.341 -0.662 0.594 H1 SSD 21 SSD H2 H2 H 0 1 N N N 32.902 67.584 8.163 -3.243 0.848 2.484 H2 SSD 22 SSD H31 1H3 H 0 1 N N N 32.343 66.321 10.099 -0.954 1.056 1.708 H31 SSD 23 SSD H32 2H3 H 0 1 N N N 32.851 64.887 9.428 -1.719 2.574 1.118 H32 SSD 24 SSD H5 H5 H 0 1 N N N 30.073 67.492 7.913 -1.807 -1.529 -0.419 H5 SSD 25 SSD HO2 HO2 H 0 1 N N N 34.513 66.030 8.004 -4.023 2.629 1.296 HO2 SSD 26 SSD HO1 HO1 H 0 1 N N N 31.053 67.217 5.054 -3.407 -1.362 2.528 HO1 SSD 27 SSD H61 1H6 H 0 1 N N N 29.532 65.270 5.766 -4.034 0.021 -1.836 H61 SSD 28 SSD H62 2H6 H 0 1 N N N 29.465 66.858 5.413 -2.859 -1.082 -2.593 H62 SSD 29 SSD HO6 HO6 H 0 1 N N N 27.578 66.153 6.358 -4.886 -2.076 -2.197 HO6 SSD 30 SSD H71 1H7 H 0 1 N N N 28.662 66.402 9.841 0.352 -0.288 -1.549 H71 SSD 31 SSD H72 2H7 H 0 1 N N N 30.171 66.841 10.554 0.259 -0.408 0.224 H72 SSD 32 SSD H8 H8 H 0 1 N N N 30.325 64.958 11.847 0.913 1.976 0.419 H8 SSD 33 SSD H9 H9 H 0 1 N N N 27.311 65.562 11.635 2.762 0.346 -1.381 H9 SSD 34 SSD H101 1H10 H 0 0 N N N 27.705 63.670 13.217 3.474 2.686 -1.225 H101 SSD 35 SSD H102 2H10 H 0 0 N N N 27.136 65.011 14.081 4.546 1.679 -0.222 H102 SSD 36 SSD H10 H10 H 0 1 N N N 29.069 64.127 15.067 3.830 3.568 0.860 H10 SSD 37 SSD HO8 HO8 H 0 1 N N N 28.615 63.215 11.625 1.162 1.781 -2.411 HO8 SSD 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SSD C1 C2 SING N N 1 SSD C1 C5 SING N N 2 SSD C1 O1 SING N N 3 SSD C1 H1 SING N N 4 SSD C2 C3 SING N N 5 SSD C2 O2 SING N N 6 SSD C2 H2 SING N N 7 SSD C3 S4 SING N N 8 SSD C3 H31 SING N N 9 SSD C3 H32 SING N N 10 SSD C5 S4 SING N N 11 SSD C5 C6 SING N N 12 SSD C5 H5 SING N N 13 SSD S4 C7 SING N N 14 SSD O2 HO2 SING N N 15 SSD O1 HO1 SING N N 16 SSD C6 O6 SING N N 17 SSD C6 H61 SING N N 18 SSD C6 H62 SING N N 19 SSD O6 HO6 SING N N 20 SSD C7 C8 SING N N 21 SSD C7 H71 SING N N 22 SSD C7 H72 SING N N 23 SSD C8 C9 SING N N 24 SSD C8 O8 SING N N 25 SSD C8 H8 SING N N 26 SSD C9 C10 SING N N 27 SSD C9 O9 SING N N 28 SSD C9 H9 SING N N 29 SSD C10 O10 SING N N 30 SSD C10 H101 SING N N 31 SSD C10 H102 SING N N 32 SSD O10 H10 SING N N 33 SSD O8 HO8 SING N N 34 SSD O9 S9 SING N N 35 SSD S9 O11 SING N N 36 SSD S9 O12 SING N N 37 SSD S9 O13 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SSD SMILES ACDLabs 10.04 "[O-]S([O-])([O-])OC(CO)C(O)C[S+]1C(CO)C(O)C(O)C1" SSD SMILES_CANONICAL CACTVS 3.341 "OC[C@@H](O[S]([O-])([O-])[O-])[C@@H](O)C[S@+]1C[C@@H](O)[C@H](O)[C@H]1CO" SSD SMILES CACTVS 3.341 "OC[CH](O[S]([O-])([O-])[O-])[CH](O)C[S+]1C[CH](O)[CH](O)[CH]1CO" SSD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@@H]([C@H]([S@@+]1C[C@@H]([C@@H](CO)OS([O-])([O-])[O-])O)CO)O)O" SSD SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C([S+]1CC(C(CO)OS([O-])([O-])[O-])O)CO)O)O" SSD InChI InChI 1.03 "InChI=1S/C9H20O9S2/c10-1-7(18-20(15,16)17)5(12)3-19-4-6(13)9(14)8(19)2-11/h5-14H,1-4H2,(H2-,15,16,17)/p-2/t5-,6+,7+,8+,9-,19+/m0/s1" SSD InChIKey InChI 1.03 NYHLFUZUGSMDBR-ITGKUZSGSA-L # _pdbx_chem_comp_identifier.comp_id SSD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 10.04 _pdbx_chem_comp_identifier.identifier "({[(1R,2R)-3-[(2R,3S,4S)-3,4-dihydroxy-2-(hydroxymethyl)tetrahydrothiophenium-1-yl]-2-hydroxy-1-(hydroxymethyl)propyl]oxy}-lambda~4~-sulfanetriyl)trioxidanide (non-preferred name)" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SSD "Create component" 2004-06-22 RCSB SSD "Modify descriptor" 2011-06-04 RCSB SSD "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SSD _pdbx_chem_comp_synonyms.name "DIASTEREOMER OF SALACINOL" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##