data_SSH # _chem_comp.id SSH _chem_comp.name "3-DEOXY-D-ARABINO-HEXONIC ACID" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms D-2-KETO-3-DEOXYGLUCONATE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-07-17 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 180.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SSH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1W3N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SSH O2 O2 O 0 1 N N N N N N -14.098 62.103 12.584 -3.214 0.701 -1.413 O2 SSH 1 SSH C1 C1 C 0 1 N N N N N N -14.338 62.750 13.663 -2.948 0.005 -0.296 C1 SSH 2 SSH O1 O1 O 0 1 N N N N N N -14.653 63.975 13.704 -3.716 -0.848 0.081 O1 SSH 3 SSH C2 C2 C 0 1 N N S N N N -14.230 62.118 15.008 -1.691 0.287 0.486 C2 SSH 4 SSH C3 C3 C 0 1 N N N N N N -13.610 60.720 15.079 -0.470 -0.078 -0.361 C3 SSH 5 SSH C4 C4 C 0 1 N N S N N N -12.044 60.932 15.200 0.805 0.324 0.383 C4 SSH 6 SSH O4 O4 O 0 1 N N N N N N -11.805 62.352 15.230 0.850 1.746 0.518 O4 SSH 7 SSH C5 C5 C 0 1 N N R N N N -11.308 60.334 13.984 2.027 -0.152 -0.405 C5 SSH 8 SSH O5 O5 O 0 1 N N N N N N -11.812 58.995 13.840 1.982 -1.574 -0.540 O5 SSH 9 SSH C6 C6 C 0 1 N N N N N N -9.785 60.152 14.164 3.302 0.249 0.339 C6 SSH 10 SSH O6 O6 O 0 1 N N N N N N -9.289 59.854 12.848 4.442 -0.091 -0.452 O6 SSH 11 SSH OT OT O 0 1 N Y N N N N -15.235 62.102 15.491 -1.690 -0.493 1.684 OT SSH 12 SSH H2 H2 H 0 1 N N N N N N -14.194 62.684 11.838 -4.020 0.520 -1.915 H2 SSH 13 SSH H2C1 1H2C H 0 0 N N N N N N -13.510 62.755 15.543 -1.652 1.346 0.742 H2C1 SSH 14 SSH H3C1 1H3C H 0 0 N N N N N N -13.863 60.127 14.188 -0.517 0.451 -1.313 H3C1 SSH 15 SSH H3C2 2H3C H 0 0 N N N N N N -13.994 60.172 15.952 -0.462 -1.153 -0.542 H3C2 SSH 16 SSH H4 H4 H 0 1 N N N N N N -11.673 60.433 16.107 0.809 -0.135 1.372 H4 SSH 17 SSH HA HA H 0 1 N N N N N N -11.752 62.646 16.132 0.845 2.112 -0.377 HA SSH 18 SSH H5 H5 H 0 1 N N N N N N -11.473 61.024 13.144 2.023 0.307 -1.394 H5 SSH 19 SSH HB HB H 0 1 N N N N N N -11.923 58.795 12.918 1.987 -1.940 0.355 HB SSH 20 SSH H6C1 1H6C H 0 0 N N N N N N -9.548 59.355 14.884 3.349 -0.279 1.291 H6C1 SSH 21 SSH H6C2 2H6C H 0 0 N N N N N N -9.323 61.068 14.562 3.294 1.324 0.520 H6C2 SSH 22 SSH H6 H6 H 0 1 N N N N N N -10.018 59.788 12.242 5.222 0.178 0.052 H6 SSH 23 SSH HT HT H 0 1 N N N N N N -15.133 62.097 16.435 -1.725 -1.421 1.413 HT SSH 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SSH O2 C1 SING N N 1 SSH O2 H2 SING N N 2 SSH C1 O1 DOUB N N 3 SSH C1 C2 SING N N 4 SSH C2 C3 SING N N 5 SSH C2 OT SING N N 6 SSH C2 H2C1 SING N N 7 SSH C3 C4 SING N N 8 SSH C3 H3C1 SING N N 9 SSH C3 H3C2 SING N N 10 SSH C4 O4 SING N N 11 SSH C4 C5 SING N N 12 SSH C4 H4 SING N N 13 SSH O4 HA SING N N 14 SSH C5 O5 SING N N 15 SSH C5 C6 SING N N 16 SSH C5 H5 SING N N 17 SSH O5 HB SING N N 18 SSH C6 O6 SING N N 19 SSH C6 H6C1 SING N N 20 SSH C6 H6C2 SING N N 21 SSH O6 H6 SING N N 22 SSH OT HT SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SSH SMILES ACDLabs 10.04 "O=C(O)C(O)CC(O)C(O)CO" SSH SMILES_CANONICAL CACTVS 3.341 "OC[C@@H](O)[C@@H](O)C[C@H](O)C(O)=O" SSH SMILES CACTVS 3.341 "OC[CH](O)[CH](O)C[CH](O)C(O)=O" SSH SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]([C@@H](CO)O)O)[C@@H](C(=O)O)O" SSH SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(CO)O)O)C(C(=O)O)O" SSH InChI InChI 1.03 "InChI=1S/C6H12O6/c7-2-5(10)3(8)1-4(9)6(11)12/h3-5,7-10H,1-2H2,(H,11,12)/t3-,4-,5+/m0/s1" SSH InChIKey InChI 1.03 YGMNHEPVTNXLLS-VAYJURFESA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SSH "SYSTEMATIC NAME" ACDLabs 10.04 "3-deoxy-D-arabino-hexonic acid" SSH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,4S,5R)-2,4,5,6-tetrahydroxyhexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SSH "Create component" 2004-07-17 EBI SSH "Modify descriptor" 2011-06-04 RCSB SSH "Modify linking type" 2020-06-24 RCSB SSH "Modify synonyms" 2021-03-01 PDBE SSH "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SSH _pdbx_chem_comp_synonyms.name D-2-KETO-3-DEOXYGLUCONATE _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id SSH _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Carbohydrate _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C2 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #