data_SSR # _chem_comp.id SSR _chem_comp.name "2-(3-fluoro-2-methylbenzyl)-4-methyl-1-phenyl-3-(piperazin-1-ylcarbonyl)-1H-indol-5-ol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H28 F N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[2-(3-Fluoro-2-methyl-benzyl)-5-hydroxy-4-methyl-1-phenyl-1H-indol-3-yl]-piperazin-1-yl-methanone" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-09-01 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.539 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SSR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3OOT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SSR C1 C1 C 0 1 Y N N -10.215 -26.560 -4.273 3.901 2.411 0.911 C1 SSR 1 SSR C2 C2 C 0 1 Y N N -10.868 -25.381 -3.875 3.669 1.084 0.623 C2 SSR 2 SSR C3 C3 C 0 1 Y N N -10.367 -24.614 -2.816 2.464 0.697 0.047 C3 SSR 3 SSR C4 C4 C 0 1 Y N N -9.196 -25.038 -2.149 1.491 1.668 -0.237 C4 SSR 4 SSR C5 C5 C 0 1 Y N N -8.534 -26.234 -2.547 1.733 3.007 0.057 C5 SSR 5 SSR C6 C6 C 0 1 Y N N -9.043 -26.972 -3.632 2.936 3.374 0.630 C6 SSR 6 SSR N9 N9 N 0 1 Y N N -10.864 -23.579 -2.097 1.955 -0.527 -0.347 N9 SSR 7 SSR C10 C10 C 0 1 Y N N -10.037 -23.066 -1.140 0.710 -0.376 -0.863 C10 SSR 8 SSR C11 C11 C 0 1 Y N N -9.064 -24.043 -1.030 0.354 0.940 -0.831 C11 SSR 9 SSR C12 C12 C 0 1 N N N -7.204 -26.640 -1.955 0.689 4.051 -0.247 C12 SSR 10 SSR O16 O16 O 0 1 N N N -8.427 -28.110 -4.071 3.179 4.681 0.920 O16 SSR 11 SSR C17 C17 C 0 1 N N N -7.850 -24.057 -0.156 -0.913 1.520 -1.296 C17 SSR 12 SSR N18 N18 N 0 1 N N N -7.734 -24.996 0.799 -1.842 1.913 -0.403 N18 SSR 13 SSR C19 C19 C 0 1 N N N -8.784 -26.025 1.000 -3.162 2.388 -0.845 C19 SSR 14 SSR C20 C20 C 0 1 N N N -9.073 -26.133 2.486 -4.240 1.621 -0.072 C20 SSR 15 SSR N21 N21 N 0 1 N N N -7.836 -26.314 3.219 -3.986 1.747 1.370 N21 SSR 16 SSR C22 C22 C 0 1 N N N -6.815 -25.297 3.079 -2.704 1.133 1.740 C22 SSR 17 SSR C23 C23 C 0 1 N N N -6.503 -25.060 1.610 -1.565 1.874 1.041 C23 SSR 18 SSR O32 O32 O 0 1 N N N -6.997 -23.191 -0.332 -1.124 1.644 -2.488 O32 SSR 19 SSR C35 C35 C 0 1 Y N N -11.921 -22.869 -2.576 2.628 -1.750 -0.228 C35 SSR 20 SSR C36 C36 C 0 1 Y N N -11.813 -21.540 -3.056 2.932 -2.257 1.028 C36 SSR 21 SSR C37 C37 C 0 1 Y N N -12.913 -20.812 -3.504 3.596 -3.463 1.142 C37 SSR 22 SSR C38 C38 C 0 1 Y N N -14.177 -21.397 -3.543 3.959 -4.164 0.007 C38 SSR 23 SSR C39 C39 C 0 1 Y N N -14.338 -22.712 -3.104 3.659 -3.661 -1.245 C39 SSR 24 SSR C40 C40 C 0 1 Y N N -13.230 -23.411 -2.619 2.989 -2.459 -1.366 C40 SSR 25 SSR C46 C46 C 0 1 N N N -10.224 -21.830 -0.271 -0.151 -1.494 -1.393 C46 SSR 26 SSR C47 C47 C 0 1 Y N N -10.092 -22.138 1.198 -1.114 -1.937 -0.321 C47 SSR 27 SSR C50 C50 C 0 1 Y N N -10.998 -22.968 1.906 -2.476 -1.817 -0.525 C50 SSR 28 SSR C51 C51 C 0 1 Y N N -10.817 -23.156 3.272 -3.361 -2.224 0.460 C51 SSR 29 SSR C52 C52 C 0 1 Y N N -9.718 -22.581 3.932 -2.880 -2.750 1.647 C52 SSR 30 SSR C53 C53 C 0 1 Y N N -8.833 -21.749 3.228 -1.517 -2.869 1.848 C53 SSR 31 SSR C54 C54 C 0 1 Y N N -9.039 -21.506 1.866 -0.635 -2.468 0.862 C54 SSR 32 SSR C58 C58 C 0 1 N N N -12.196 -23.656 1.282 -2.998 -1.244 -1.817 C58 SSR 33 SSR F62 F62 F 0 1 N N N -11.692 -23.926 3.942 -4.692 -2.107 0.262 F62 SSR 34 SSR H1 H1 H 0 1 N N N -10.621 -27.152 -5.080 4.836 2.705 1.362 H1 SSR 35 SSR H2 H2 H 0 1 N N N -11.763 -25.064 -4.390 4.424 0.344 0.844 H2 SSR 36 SSR H12 H12 H 0 1 N N N -7.372 -27.321 -1.108 0.033 4.170 0.615 H12 SSR 37 SSR H12A H12A H 0 0 N N N -6.602 -27.150 -2.722 1.178 5.000 -0.466 H12A SSR 38 SSR H12B H12B H 0 0 N N N -6.670 -25.744 -1.605 0.102 3.737 -1.110 H12B SSR 39 SSR HO16 HO16 H 0 0 N N N -7.649 -28.270 -3.550 3.597 5.172 0.200 HO16 SSR 40 SSR H19 H19 H 0 1 N N N -9.699 -25.734 0.463 -3.254 3.455 -0.642 H19 SSR 41 SSR H19A H19A H 0 0 N N N -8.434 -26.995 0.617 -3.277 2.205 -1.914 H19A SSR 42 SSR H20 H20 H 0 1 N N N -9.567 -25.212 2.828 -5.220 2.036 -0.306 H20 SSR 43 SSR H20A H20A H 0 0 N N N -9.732 -26.995 2.667 -4.212 0.569 -0.356 H20A SSR 44 SSR HN21 HN21 H 0 0 N N N -8.077 -26.350 4.189 -4.023 2.712 1.661 HN21 SSR 45 SSR H22 H22 H 0 1 N N N -7.175 -24.359 3.528 -2.570 1.194 2.820 H22 SSR 46 SSR H22A H22A H 0 0 N N N -5.901 -25.629 3.594 -2.697 0.088 1.431 H22A SSR 47 SSR H23 H23 H 0 1 N N N -5.879 -25.888 1.242 -0.626 1.352 1.220 H23 SSR 48 SSR H23A H23A H 0 0 N N N -5.964 -24.106 1.512 -1.501 2.891 1.429 H23A SSR 49 SSR H36 H36 H 0 1 N N N -10.839 -21.073 -3.075 2.649 -1.710 1.916 H36 SSR 50 SSR H37 H37 H 0 1 N N N -12.785 -19.788 -3.823 3.832 -3.859 2.119 H37 SSR 51 SSR H38 H38 H 0 1 N N N -15.025 -20.838 -3.910 4.479 -5.106 0.098 H38 SSR 52 SSR H39 H39 H 0 1 N N N -15.309 -23.184 -3.139 3.944 -4.210 -2.130 H39 SSR 53 SSR H40 H40 H 0 1 N N N -13.379 -24.418 -2.258 2.750 -2.069 -2.344 H40 SSR 54 SSR H46 H46 H 0 1 N N N -9.456 -21.091 -0.544 -0.709 -1.143 -2.261 H46 SSR 55 SSR H46A H46A H 0 0 N N N -11.229 -21.423 -0.454 0.481 -2.333 -1.682 H46A SSR 56 SSR H52 H52 H 0 1 N N N -9.554 -22.779 4.981 -3.569 -3.068 2.415 H52 SSR 57 SSR H53 H53 H 0 1 N N N -7.995 -21.297 3.737 -1.142 -3.279 2.773 H53 SSR 58 SSR H54 H54 H 0 1 N N N -8.386 -20.832 1.332 0.429 -2.565 1.018 H54 SSR 59 SSR H58 H58 H 0 1 N N N -11.902 -24.655 0.928 -3.042 -2.029 -2.571 H58 SSR 60 SSR H58A H58A H 0 0 N N N -12.995 -23.753 2.032 -3.996 -0.837 -1.657 H58A SSR 61 SSR H58B H58B H 0 0 N N N -12.560 -23.059 0.433 -2.332 -0.450 -2.157 H58B SSR 62 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SSR C1 C2 DOUB Y N 1 SSR C1 C6 SING Y N 2 SSR C2 C3 SING Y N 3 SSR C3 C4 DOUB Y N 4 SSR C3 N9 SING Y N 5 SSR C4 C5 SING Y N 6 SSR C4 C11 SING Y N 7 SSR C5 C6 DOUB Y N 8 SSR C5 C12 SING N N 9 SSR C6 O16 SING N N 10 SSR N9 C10 SING Y N 11 SSR N9 C35 SING Y N 12 SSR C10 C11 DOUB Y N 13 SSR C10 C46 SING N N 14 SSR C11 C17 SING N N 15 SSR C17 N18 SING N N 16 SSR C17 O32 DOUB N N 17 SSR N18 C19 SING N N 18 SSR N18 C23 SING N N 19 SSR C19 C20 SING N N 20 SSR C20 N21 SING N N 21 SSR N21 C22 SING N N 22 SSR C22 C23 SING N N 23 SSR C35 C36 DOUB Y N 24 SSR C35 C40 SING Y N 25 SSR C36 C37 SING Y N 26 SSR C37 C38 DOUB Y N 27 SSR C38 C39 SING Y N 28 SSR C39 C40 DOUB Y N 29 SSR C46 C47 SING N N 30 SSR C47 C50 DOUB Y N 31 SSR C47 C54 SING Y N 32 SSR C50 C51 SING Y N 33 SSR C50 C58 SING N N 34 SSR C51 C52 DOUB Y N 35 SSR C51 F62 SING N N 36 SSR C52 C53 SING Y N 37 SSR C53 C54 DOUB Y N 38 SSR C1 H1 SING N N 39 SSR C2 H2 SING N N 40 SSR C12 H12 SING N N 41 SSR C12 H12A SING N N 42 SSR C12 H12B SING N N 43 SSR O16 HO16 SING N N 44 SSR C19 H19 SING N N 45 SSR C19 H19A SING N N 46 SSR C20 H20 SING N N 47 SSR C20 H20A SING N N 48 SSR N21 HN21 SING N N 49 SSR C22 H22 SING N N 50 SSR C22 H22A SING N N 51 SSR C23 H23 SING N N 52 SSR C23 H23A SING N N 53 SSR C36 H36 SING N N 54 SSR C37 H37 SING N N 55 SSR C38 H38 SING N N 56 SSR C39 H39 SING N N 57 SSR C40 H40 SING N N 58 SSR C46 H46 SING N N 59 SSR C46 H46A SING N N 60 SSR C52 H52 SING N N 61 SSR C53 H53 SING N N 62 SSR C54 H54 SING N N 63 SSR C58 H58 SING N N 64 SSR C58 H58A SING N N 65 SSR C58 H58B SING N N 66 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SSR SMILES ACDLabs 12.01 "O=C(c3c1c(c(O)ccc1n(c2ccccc2)c3Cc4cccc(F)c4C)C)N5CCNCC5" SSR SMILES_CANONICAL CACTVS 3.370 "Cc1c(F)cccc1Cc2n(c3ccccc3)c4ccc(O)c(C)c4c2C(=O)N5CCNCC5" SSR SMILES CACTVS 3.370 "Cc1c(F)cccc1Cc2n(c3ccccc3)c4ccc(O)c(C)c4c2C(=O)N5CCNCC5" SSR SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1c(cccc1F)Cc2c(c3c(c(ccc3n2c4ccccc4)O)C)C(=O)N5CCNCC5" SSR SMILES "OpenEye OEToolkits" 1.7.0 "Cc1c(cccc1F)Cc2c(c3c(c(ccc3n2c4ccccc4)O)C)C(=O)N5CCNCC5" SSR InChI InChI 1.03 "InChI=1S/C28H28FN3O2/c1-18-20(7-6-10-22(18)29)17-24-27(28(34)31-15-13-30-14-16-31)26-19(2)25(33)12-11-23(26)32(24)21-8-4-3-5-9-21/h3-12,30,33H,13-17H2,1-2H3" SSR InChIKey InChI 1.03 LWFGTVRNQYOUHL-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SSR "SYSTEMATIC NAME" ACDLabs 12.01 "[2-(3-fluoro-2-methylbenzyl)-5-hydroxy-4-methyl-1-phenyl-1H-indol-3-yl](piperazin-1-yl)methanone" SSR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[2-[(3-fluoro-2-methyl-phenyl)methyl]-5-hydroxy-4-methyl-1-phenyl-indol-3-yl]-piperazin-1-yl-methanone" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SSR "Create component" 2010-09-01 RCSB SSR "Modify aromatic_flag" 2011-06-04 RCSB SSR "Modify descriptor" 2011-06-04 RCSB SSR "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SSR _pdbx_chem_comp_synonyms.name "[2-(3-Fluoro-2-methyl-benzyl)-5-hydroxy-4-methyl-1-phenyl-1H-indol-3-yl]-piperazin-1-yl-methanone" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##