data_SSS
#
_chem_comp.id SSS
_chem_comp.name "N-{[5-AMINO-1-(5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-1H-IMIDAZOL-4-YL]CARBONYL}-L-ASPARTIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C13 H19 N4 O12 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "N-{[5-AMINO-1-(5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-1H-IMIDAZOL-4-YL]CARBONYL}-L-ASPARTIC ACID"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-05-24
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 454.283
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SSS
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2CNV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SSS PA PA P 0 1 N N N -7.558 25.536 -6.448 -3.470 -6.068 0.377 PA SSS 1
SSS O1A O1A O 0 1 N N N -6.904 26.265 -7.587 -2.508 -6.911 1.367 O1A SSS 2
SSS O2A O2A O 0 1 N N N -7.341 24.043 -6.485 -4.713 -5.658 1.327 O2A SSS 3
SSS O3A O3A O 0 1 N N N -8.968 25.963 -6.165 -3.839 -6.770 -0.897 O3A SSS 4
SSS "O5'" "O5'" O 0 1 N N N -6.748 26.013 -5.150 -2.661 -4.679 0.183 "O5'" SSS 5
SSS "C5'" "C5'" C 0 1 N N N -6.809 25.313 -3.909 -2.275 -3.954 1.337 "C5'" SSS 6
SSS "C4'" "C4'" C 0 1 N N R -6.027 26.095 -2.864 -1.537 -2.701 0.901 "C4'" SSS 7
SSS "O4'" "O4'" O 0 1 N N N -4.748 26.414 -3.408 -2.410 -1.876 0.110 "O4'" SSS 8
SSS "C1'" "C1'" C 0 1 N N R -4.347 27.707 -2.953 -2.082 -0.493 0.362 "C1'" SSS 9
SSS N9 N9 N 0 1 Y N N -3.440 28.388 -3.916 -3.297 0.222 0.747 N9 SSS 10
SSS C4 C4 C 0 1 Y N N -3.383 28.345 -5.249 -3.620 1.527 0.474 C4 SSS 11
SSS O6 O6 O 0 1 N N N -2.256 28.452 -7.993 -5.207 3.960 0.457 O6 SSS 12
SSS N3 N3 N 0 1 N N N -4.252 27.645 -6.044 -2.794 2.331 -0.227 N3 SSS 13
SSS C6 C6 C 0 1 N N N -1.996 29.316 -7.166 -5.620 2.930 1.043 C6 SSS 14
SSS N6 N6 N 0 1 N N N -1.380 30.461 -7.473 -6.869 2.920 1.696 N6 SSS 15
SSS C61 C61 C 0 1 N N S -0.966 30.813 -8.827 -7.766 4.052 1.756 C61 SSS 16
SSS C62 C62 C 0 1 N N N 0.396 30.270 -9.168 -7.418 4.971 2.915 C62 SSS 17
SSS C63 C63 C 0 1 N N N -0.950 32.341 -8.834 -9.223 3.594 1.865 C63 SSS 18
SSS C64 C64 C 0 1 N N N -2.122 32.871 -9.630 -9.648 2.704 0.716 C64 SSS 19
SSS O65 O65 O 0 1 N N N 0.944 30.668 -10.210 -7.975 6.042 3.126 O65 SSS 20
SSS O66 O66 O 0 1 N N N 0.946 29.437 -8.414 -6.421 4.495 3.698 O66 SSS 21
SSS O67 O67 O 0 1 N N N -3.075 33.384 -9.003 -9.218 2.764 -0.428 O67 SSS 22
SSS O68 O68 O 0 1 N N N -2.103 32.787 -10.883 -10.589 1.805 1.107 O68 SSS 23
SSS C5 C5 C 0 1 Y N N -2.344 29.117 -5.731 -4.853 1.720 1.051 C5 SSS 24
SSS N7 N7 N 0 1 Y N N -1.746 29.629 -4.634 -5.296 0.576 1.667 N7 SSS 25
SSS C8 C8 C 0 1 Y N N -2.415 29.173 -3.544 -4.340 -0.304 1.467 C8 SSS 26
SSS "C2'" "C2'" C 0 1 N N S -5.609 28.471 -2.563 -0.942 -0.484 1.383 "C2'" SSS 27
SSS "O2'" "O2'" O 0 1 N N N -6.021 29.501 -3.455 -1.004 0.578 2.314 "O2'" SSS 28
SSS "C3'" "C3'" C 0 1 N N S -6.687 27.420 -2.504 -1.080 -1.830 2.060 "C3'" SSS 29
SSS "O3'" "O3'" O 0 1 N N N -7.133 27.458 -1.155 0.160 -2.262 2.588 "O3'" SSS 30
SSS "H5'1" "1H5'" H 0 0 N N N -6.375 24.309 -4.026 -3.166 -3.686 1.907 "H5'1" SSS 31
SSS "H5'2" "2H5'" H 0 0 N N N -7.857 25.215 -3.590 -1.623 -4.579 1.951 "H5'2" SSS 32
SSS "H4'" "H4'" H 0 1 N N N -5.973 25.467 -1.962 -0.690 -2.997 0.272 "H4'" SSS 33
SSS "H1'" "H1'" H 0 1 N N N -3.716 27.640 -2.054 -1.770 -0.031 -0.580 "H1'" SSS 34
SSS H3N1 1H3N H 0 0 N N N -4.453 28.177 -6.867 -1.870 2.015 -0.559 H3N1 SSS 35
SSS H3N2 2H3N H 0 0 N N N -5.100 27.474 -5.542 -3.002 3.329 -0.384 H3N2 SSS 36
SSS H6 H6 H 0 1 N N N -1.193 31.111 -6.736 -7.196 2.050 2.103 H6 SSS 37
SSS H61 H61 H 0 1 N N N -1.646 30.384 -9.578 -7.592 4.622 0.836 H61 SSS 38
SSS H631 1H63 H 0 0 N N N -0.014 32.689 -9.296 -9.893 4.463 1.857 H631 SSS 39
SSS H632 2H63 H 0 0 N N N -1.018 32.709 -7.800 -9.377 3.047 2.803 H632 SSS 40
SSS H66 H66 H 0 1 N N N 1.792 29.195 -8.772 -6.211 5.106 4.436 H66 SSS 41
SSS H68 H68 H 0 1 N N N -2.900 33.164 -11.238 -10.904 1.201 0.401 H68 SSS 42
SSS H8 H8 H 0 1 N N N -2.159 29.408 -2.521 -4.342 -1.328 1.815 H8 SSS 43
SSS "H2'" "H2'" H 0 1 N N N -5.410 29.002 -1.620 0.024 -0.418 0.870 "H2'" SSS 44
SSS HA HA H 0 1 N N N -6.113 30.317 -2.977 -0.089 0.843 2.496 HA SSS 45
SSS "H3'" "H3'" H 0 1 N N N -7.535 27.568 -3.188 -1.815 -1.795 2.872 "H3'" SSS 46
SSS HB HB H 0 1 N N N -6.382 27.466 -0.573 0.332 -1.716 3.370 HB SSS 47
SSS HO1 HO1 H 0 1 N N N -7.295 23.751 -7.388 -5.395 -6.333 1.532 HO1 SSS 48
SSS HO2 HO2 H 0 1 N N N -6.766 27.173 -7.345 -2.735 -7.843 1.570 HO2 SSS 49
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SSS PA O1A SING N N 1
SSS PA O2A SING N N 2
SSS PA O3A DOUB N N 3
SSS PA "O5'" SING N N 4
SSS "O5'" "C5'" SING N N 5
SSS "C5'" "C4'" SING N N 6
SSS "C5'" "H5'1" SING N N 7
SSS "C5'" "H5'2" SING N N 8
SSS "C4'" "O4'" SING N N 9
SSS "C4'" "C3'" SING N N 10
SSS "C4'" "H4'" SING N N 11
SSS "O4'" "C1'" SING N N 12
SSS "C1'" N9 SING N N 13
SSS "C1'" "C2'" SING N N 14
SSS "C1'" "H1'" SING N N 15
SSS N9 C4 SING Y N 16
SSS N9 C8 SING Y N 17
SSS C4 N3 SING N N 18
SSS C4 C5 DOUB Y N 19
SSS O6 C6 DOUB N N 20
SSS N3 H3N1 SING N N 21
SSS N3 H3N2 SING N N 22
SSS C6 N6 SING N N 23
SSS C6 C5 SING N N 24
SSS N6 C61 SING N N 25
SSS N6 H6 SING N N 26
SSS C61 C62 SING N N 27
SSS C61 C63 SING N N 28
SSS C61 H61 SING N N 29
SSS C62 O65 DOUB N N 30
SSS C62 O66 SING N N 31
SSS C63 C64 SING N N 32
SSS C63 H631 SING N N 33
SSS C63 H632 SING N N 34
SSS C64 O67 DOUB N N 35
SSS C64 O68 SING N N 36
SSS O66 H66 SING N N 37
SSS O68 H68 SING N N 38
SSS C5 N7 SING Y N 39
SSS N7 C8 DOUB Y N 40
SSS C8 H8 SING N N 41
SSS "C2'" "O2'" SING N N 42
SSS "C2'" "C3'" SING N N 43
SSS "C2'" "H2'" SING N N 44
SSS "O2'" HA SING N N 45
SSS "C3'" "O3'" SING N N 46
SSS "C3'" "H3'" SING N N 47
SSS "O3'" HB SING N N 48
SSS HO1 O2A SING N N 49
SSS HO2 O1A SING N N 50
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SSS SMILES ACDLabs 10.04 "O=C(O)CC(C(=O)O)NC(=O)c1ncn(c1N)C2OC(C(O)C2O)COP(=O)(O)O"
SSS SMILES_CANONICAL CACTVS 3.341 "Nc1n(cnc1C(=O)N[C@@H](CC(O)=O)C(O)=O)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2O"
SSS SMILES CACTVS 3.341 "Nc1n(cnc1C(=O)N[CH](CC(O)=O)C(O)=O)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O"
SSS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c(n1[C@H]2[C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O)N)C(=O)N[C@@H](CC(=O)O)C(=O)O"
SSS SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c(n1C2C(C(C(O2)COP(=O)(O)O)O)O)N)C(=O)NC(CC(=O)O)C(=O)O"
SSS InChI InChI 1.03 "InChI=1S/C13H19N4O12P/c14-10-7(11(22)16-4(13(23)24)1-6(18)19)15-3-17(10)12-9(21)8(20)5(29-12)2-28-30(25,26)27/h3-5,8-9,12,20-21H,1-2,14H2,(H,16,22)(H,18,19)(H,23,24)(H2,25,26,27)/t4-,5+,8+,9-,12+/m0/s1"
SSS InChIKey InChI 1.03 NAQGHJTUZRHGAC-PSYSQGJASA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SSS "SYSTEMATIC NAME" ACDLabs 10.04 "N-{[5-amino-1-(5-O-phosphono-beta-D-arabinofuranosyl)-1H-imidazol-4-yl]carbonyl}-L-aspartic acid"
SSS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[5-amino-1-[(2R,3S,4S,5R)-3,4-dihydroxy-5-(phosphonooxymethyl)oxolan-2-yl]imidazol-4-yl]carbonylamino]butanedioic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SSS "Create component" 2006-05-24 EBI
SSS "Modify descriptor" 2011-06-04 RCSB
SSS "Modify synonyms" 2020-03-16 PDBE
SSS "Modify synonyms" 2020-03-17 PDBE
SSS "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id SSS
_pdbx_chem_comp_synonyms.name "N-{[5-AMINO-1-(5-O-PHOSPHONO-BETA-D-ARABINOFURANOSYL)-1H-IMIDAZOL-4-YL]CARBONYL}-L-ASPARTIC ACID"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##