data_SU9 # _chem_comp.id SU9 _chem_comp.name "(3Z)-3-(1H-IMIDAZOL-5-YLMETHYLENE)-5-METHOXY-1H-INDOL-2(3H)-ONE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H11 N3 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms SU9516 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-05-27 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 241.245 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SU9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1PF8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SU9 "N5'" "N5'" N 0 1 Y N N 3.901 30.318 7.215 -0.078 -0.750 -3.413 "N5'" SU9 1 SU9 "C4'" "C4'" C 0 1 Y N N 5.056 29.693 6.641 0.103 -0.555 -4.732 "C4'" SU9 2 SU9 "N3'" "N3'" N 0 1 Y N N 5.170 28.299 7.269 1.117 0.252 -4.918 "N3'" SU9 3 SU9 "C2'" "C2'" C 0 1 Y N N 4.116 28.241 8.388 1.627 0.616 -3.743 "C2'" SU9 4 SU9 "C1'" "C1'" C 0 1 Y N N 3.229 29.465 8.189 0.888 -0.012 -2.755 "C1'" SU9 5 SU9 "C6'" "C6'" C 0 1 N N N 2.311 29.690 8.850 1.079 0.085 -1.360 "C6'" SU9 6 SU9 C9 C9 C 0 1 N N N 1.505 30.855 8.634 -0.010 0.096 -0.513 C9 SU9 7 SU9 C8 C8 C 0 1 N N N 1.620 31.983 7.753 -1.430 0.158 -0.885 C8 SU9 8 SU9 O10 O10 O 0 1 N N N 2.497 32.160 6.941 -1.871 0.209 -2.019 O10 SU9 9 SU9 N7 N7 N 0 1 N N N 0.667 32.876 7.881 -2.157 0.147 0.244 N7 SU9 10 SU9 C5 C5 C 0 1 Y N N -0.154 32.389 8.888 -1.342 0.083 1.370 C5 SU9 11 SU9 C6 C6 C 0 1 Y N N -1.350 32.957 9.455 -1.641 0.050 2.728 C6 SU9 12 SU9 C1 C1 C 0 1 Y N N -2.013 32.265 10.496 -0.626 -0.014 3.661 C1 SU9 13 SU9 C2 C2 C 0 1 Y N N -1.560 31.062 10.995 0.702 -0.047 3.258 C2 SU9 14 SU9 O11 O11 O 0 1 N N N -2.150 30.434 11.936 1.693 -0.112 4.187 O11 SU9 15 SU9 C12 C12 C 0 1 N N N -1.777 29.365 12.406 1.058 -0.131 5.467 C12 SU9 16 SU9 C3 C3 C 0 1 Y N N -0.242 30.402 10.391 1.018 -0.009 1.911 C3 SU9 17 SU9 C4 C4 C 0 1 Y N N 0.326 31.169 9.371 -0.001 0.049 0.966 C4 SU9 18 SU9 "H5'" "H5'" H 0 1 N N N 3.594 31.257 6.961 -0.760 -1.304 -3.001 "H5'" SU9 19 SU9 "H4'" "H4'" H 0 1 N N N 5.706 30.173 5.890 -0.493 -0.996 -5.516 "H4'" SU9 20 SU9 "H2'" "H2'" H 0 1 N N N 4.016 27.475 9.175 2.468 1.275 -3.589 "H2'" SU9 21 SU9 "H6'" "H6'" H 0 1 N N N 2.215 28.887 9.600 2.079 0.152 -0.955 "H6'" SU9 22 SU9 HN7 HN7 H 0 1 N N N 0.585 33.734 7.335 -3.126 0.180 0.272 HN7 SU9 23 SU9 H6 H6 H 0 1 N N N -1.756 33.917 9.094 -2.670 0.076 3.053 H6 SU9 24 SU9 H1 H1 H 0 1 N N N -2.930 32.685 10.942 -0.868 -0.039 4.713 H1 SU9 25 SU9 H121 1H12 H 0 0 N N N -0.719 29.506 12.727 1.817 -0.182 6.248 H121 SU9 26 SU9 H122 2H12 H 0 0 N N N -2.293 28.816 13.228 0.468 0.776 5.594 H122 SU9 27 SU9 H123 3H12 H 0 0 N N N -1.684 28.653 11.553 0.406 -1.001 5.537 H123 SU9 28 SU9 H3 H3 H 0 1 N N N 0.255 29.457 10.667 2.050 -0.029 1.594 H3 SU9 29 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SU9 "N5'" "C4'" SING Y N 1 SU9 "N5'" "C1'" SING Y N 2 SU9 "N5'" "H5'" SING N N 3 SU9 "C4'" "N3'" DOUB Y N 4 SU9 "C4'" "H4'" SING N N 5 SU9 "N3'" "C2'" SING Y N 6 SU9 "C2'" "C1'" DOUB Y N 7 SU9 "C2'" "H2'" SING N N 8 SU9 "C1'" "C6'" SING N N 9 SU9 "C6'" C9 DOUB N Z 10 SU9 "C6'" "H6'" SING N N 11 SU9 C9 C8 SING N N 12 SU9 C9 C4 SING N N 13 SU9 C8 O10 DOUB N N 14 SU9 C8 N7 SING N N 15 SU9 N7 C5 SING N N 16 SU9 N7 HN7 SING N N 17 SU9 C5 C6 DOUB Y N 18 SU9 C5 C4 SING Y N 19 SU9 C6 C1 SING Y N 20 SU9 C6 H6 SING N N 21 SU9 C1 C2 DOUB Y N 22 SU9 C1 H1 SING N N 23 SU9 C2 O11 SING N N 24 SU9 C2 C3 SING Y N 25 SU9 O11 C12 SING N N 26 SU9 C12 H121 SING N N 27 SU9 C12 H122 SING N N 28 SU9 C12 H123 SING N N 29 SU9 C3 C4 DOUB Y N 30 SU9 C3 H3 SING N N 31 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SU9 SMILES ACDLabs 10.04 "O=C/1Nc3ccc(OC)cc3C\1=C/c2cncn2" SU9 SMILES_CANONICAL CACTVS 3.341 "COc1ccc2NC(=O)\C(=C/c3[nH]cnc3)c2c1" SU9 SMILES CACTVS 3.341 "COc1ccc2NC(=O)C(=Cc3[nH]cnc3)c2c1" SU9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "COc1ccc2c(c1)/C(=C/c3cnc[nH]3)/C(=O)N2" SU9 SMILES "OpenEye OEToolkits" 1.5.0 "COc1ccc2c(c1)C(=Cc3cnc[nH]3)C(=O)N2" SU9 InChI InChI 1.03 "InChI=1S/C13H11N3O2/c1-18-9-2-3-12-10(5-9)11(13(17)16-12)4-8-6-14-7-15-8/h2-7H,1H3,(H,14,15)(H,16,17)/b11-4-" SU9 InChIKey InChI 1.03 QNUKRWAIZMBVCU-WCIBSUBMSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SU9 "SYSTEMATIC NAME" ACDLabs 10.04 "(3Z)-3-(1H-imidazol-5-ylmethylidene)-5-methoxy-1,3-dihydro-2H-indol-2-one" SU9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3Z)-3-(3H-imidazol-4-ylmethylidene)-5-methoxy-1H-indol-2-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SU9 "Create component" 2003-05-27 RCSB SU9 "Modify descriptor" 2011-06-04 RCSB SU9 "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SU9 _pdbx_chem_comp_synonyms.name SU9516 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##