data_SV9 # _chem_comp.id SV9 _chem_comp.name "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-5-[7,8-dimethyl-2,4-bis(oxidanylidene)-5-[3-[4-(3-phenylphenyl)phenyl]propanoyl]-1~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C48 H51 N9 O16 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-19 _chem_comp.pdbx_modified_date 2024-05-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1071.917 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SV9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8BOP _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SV9 C4 C1 C 0 1 Y N N N N N -7.085 59.164 83.429 -3.788 -3.008 1.527 C4 SV9 1 SV9 C14 C2 C 0 1 Y N N N N N -6.360 52.315 84.961 -7.989 2.940 -1.681 C14 SV9 2 SV9 C5 C3 C 0 1 Y N N N N N -7.620 58.536 82.339 -4.853 -2.536 0.760 C5 SV9 3 SV9 C6 C4 C 0 1 Y N N N N N -7.480 59.074 81.077 -5.588 -1.446 1.191 C6 SV9 4 SV9 C11 C5 C 0 1 N N N N N N -6.275 55.610 83.070 -7.350 -0.735 -2.252 C11 SV9 5 SV9 C7 C6 C 0 1 Y N N N N N -6.871 60.273 80.904 -5.264 -0.827 2.386 C7 SV9 6 SV9 C8 C7 C 0 1 N N N N N N -6.752 60.851 79.527 -6.063 0.360 2.859 C8 SV9 7 SV9 C9 C8 C 0 1 N N N N N N -8.041 56.359 81.518 -6.000 -2.605 -1.339 C9 SV9 8 SV9 C10 C9 C 0 1 N N N N N N -6.936 55.369 81.740 -6.695 -1.313 -0.995 C10 SV9 9 SV9 C12 C10 C 0 1 Y N N N N N -5.861 54.388 83.848 -8.045 0.557 -1.908 C12 SV9 10 SV9 C13 C11 C 0 1 Y N N N N N -6.764 53.418 84.229 -7.357 1.753 -1.995 C13 SV9 11 SV9 N1 N1 N 0 1 N N N N N N -8.192 57.336 82.477 -5.166 -3.179 -0.450 N1 SV9 12 SV9 N2 N2 N 0 1 N N N N N N -8.522 57.169 86.105 -2.984 -6.120 -0.212 N2 SV9 13 SV9 C3 C12 C 0 1 Y N N N N N -6.485 60.403 83.280 -3.473 -2.387 2.724 C3 SV9 14 SV9 N3 N3 N 0 1 N N N N N N -9.945 55.618 85.140 -4.493 -6.450 -1.979 N3 SV9 15 SV9 C1 C13 C 0 1 N N N N N N -5.670 62.285 81.872 -3.863 -0.615 4.447 C1 SV9 16 SV9 C15 C14 C 0 1 Y N N N N N -5.039 52.157 85.369 -9.322 2.930 -1.275 C15 SV9 17 SV9 C16 C15 C 0 1 Y N N N N N -4.584 50.961 86.124 -10.005 4.202 -0.931 C16 SV9 18 SV9 C17 C16 C 0 1 Y N N N N N -3.465 51.002 86.946 -9.314 5.410 -1.013 C17 SV9 19 SV9 C18 C17 C 0 1 Y N N N N N -3.038 49.875 87.618 -9.948 6.594 -0.693 C18 SV9 20 SV9 C19 C18 C 0 1 Y N N N N N -3.708 48.679 87.457 -11.269 6.589 -0.291 C19 SV9 21 SV9 C2 C19 C 0 1 Y N N N N N -6.360 60.965 82.042 -4.209 -1.294 3.148 C2 SV9 22 SV9 C20 C20 C 0 1 Y N N N N N -4.822 48.590 86.632 -11.970 5.387 -0.205 C20 SV9 23 SV9 C21 C21 C 0 1 Y N N N N N -5.541 47.306 86.420 -13.390 5.383 0.227 C21 SV9 24 SV9 C22 C22 C 0 1 Y N N N N N -4.953 46.269 85.705 -14.090 4.182 0.318 C22 SV9 25 SV9 C23 C23 C 0 1 Y N N N N N -5.628 45.080 85.488 -15.410 4.184 0.721 C23 SV9 26 SV9 C24 C24 C 0 1 Y N N N N N -6.906 44.912 85.967 -16.038 5.376 1.033 C24 SV9 27 SV9 C25 C25 C 0 1 Y N N N N N -7.514 45.925 86.662 -15.348 6.572 0.944 C25 SV9 28 SV9 C26 C26 C 0 1 Y N N N N N -6.839 47.115 86.882 -14.026 6.581 0.549 C26 SV9 29 SV9 C27 C27 C 0 1 Y N N N N N -5.230 49.740 85.966 -11.337 4.191 -0.532 C27 SV9 30 SV9 C28 C28 C 0 1 Y N N N N N -4.139 53.141 84.996 -10.011 1.722 -1.194 C28 SV9 31 SV9 C29 C29 C 0 1 Y N N N N N -4.553 54.233 84.259 -9.371 0.542 -1.515 C29 SV9 32 SV9 C30 C30 C 0 1 N N N N N N -8.684 56.975 83.753 -4.587 -4.441 -0.714 C30 SV9 33 SV9 C31 C31 C 0 1 N N N N N N -8.119 57.556 84.872 -3.536 -4.890 0.057 C31 SV9 34 SV9 C32 C32 C 0 1 N N N N N N -9.449 56.187 86.266 -3.468 -6.873 -1.217 C32 SV9 35 SV9 C33 C33 C 0 1 N N N N N N -9.572 55.967 83.867 -5.068 -5.250 -1.756 C33 SV9 36 SV9 C34 C34 C 0 1 N N N N N N -6.623 59.293 85.845 -1.762 -4.436 1.703 C34 SV9 37 SV9 C35 C35 C 0 1 N N S N N N -7.536 60.316 86.463 -0.633 -3.760 0.922 C35 SV9 38 SV9 C36 C36 C 0 1 N N S N N N -6.763 61.338 87.285 0.708 -4.085 1.582 C36 SV9 39 SV9 C37 C37 C 0 1 N N R N N N -7.554 62.057 88.369 1.837 -3.409 0.801 C37 SV9 40 SV9 C38 C38 C 0 1 N N N N N N -6.741 63.175 88.966 3.179 -3.734 1.460 C38 SV9 41 SV9 C39 C39 C 0 1 N N N N N N -6.430 69.095 89.484 9.964 -0.549 -1.253 C39 SV9 42 SV9 C40 C40 C 0 1 N N R N N N -6.937 70.503 89.413 9.981 0.840 -1.894 C40 SV9 43 SV9 C41 C41 C 0 1 N N R N N N -6.217 72.558 88.918 10.383 3.023 -1.232 C41 SV9 44 SV9 C42 C42 C 0 1 Y N N N N N -3.872 73.197 88.242 10.380 3.506 1.245 C42 SV9 45 SV9 C43 C43 C 0 1 Y N N N N N -3.741 75.120 89.084 10.737 5.644 1.279 C43 SV9 46 SV9 C44 C44 C 0 1 Y N N N N N -3.412 76.393 89.543 10.955 7.003 1.565 C44 SV9 47 SV9 C45 C45 C 0 1 Y N N N N N -5.522 76.487 90.453 11.100 7.421 -0.700 C45 SV9 48 SV9 C46 C46 C 0 1 Y N N N N N -4.997 74.666 89.375 10.716 5.245 -0.068 C46 SV9 49 SV9 C47 C47 C 0 1 N N R N N N -6.840 72.112 87.624 11.774 2.470 -1.633 C47 SV9 50 SV9 C48 C48 C 0 1 N N S N N N -7.651 70.922 88.129 11.402 1.171 -2.389 C48 SV9 51 SV9 N4 N4 N 0 1 N N N N N N -7.248 58.604 84.698 -3.049 -4.112 1.081 N4 SV9 52 SV9 N5 N5 N 0 1 Y N N N N N -5.081 73.437 88.814 10.489 3.892 -0.058 N5 SV9 53 SV9 N6 N6 N 0 1 Y N N N N N -3.040 74.187 88.360 10.526 4.535 2.027 N6 SV9 54 SV9 N7 N7 N 0 1 N N N N N N -2.248 76.970 89.327 10.987 7.455 2.873 N7 SV9 55 SV9 N8 N8 N 0 1 Y N N N N N -4.344 77.062 90.236 11.129 7.844 0.551 N8 SV9 56 SV9 N9 N9 N 0 1 Y N N N N N -5.948 75.306 90.056 10.900 6.159 -1.015 N9 SV9 57 SV9 O1 O1 O 0 1 N N N N N N -8.837 56.244 80.620 -6.192 -3.129 -2.417 O1 SV9 58 SV9 O10 O2 O 0 1 N N N N N N -6.373 66.229 89.952 6.671 -2.270 0.202 O10 SV9 59 SV9 O11 O3 O 0 1 N N N N N N -8.238 66.087 88.349 8.526 -3.496 -1.201 O11 SV9 60 SV9 O12 O4 O 0 1 N N N N N N -5.945 67.116 87.748 9.044 -2.461 1.042 O12 SV9 61 SV9 O13 O5 O 0 1 N N N N N N -7.505 68.199 89.283 8.625 -0.888 -0.887 O13 SV9 62 SV9 O14 O6 O 0 1 N N N N N N -5.796 71.363 89.477 9.626 1.834 -0.918 O14 SV9 63 SV9 O15 O7 O 0 1 N N N N N N -7.640 73.206 87.276 12.458 3.383 -2.494 O15 SV9 64 SV9 O16 O8 O 0 1 N N N N N N -8.970 71.294 88.469 11.400 1.398 -3.800 O16 SV9 65 SV9 O2 O9 O 0 1 N N N N N N -9.817 55.835 87.360 -2.968 -7.959 -1.441 O2 SV9 66 SV9 O3 O10 O 0 1 N N N N N N -10.090 55.398 82.921 -5.996 -4.873 -2.452 O3 SV9 67 SV9 O4 O11 O 0 1 N N N N N N -8.127 61.004 85.436 -0.631 -4.240 -0.424 O4 SV9 68 SV9 O5 O12 O 0 1 N N N N N N -5.729 60.684 87.911 0.706 -3.605 2.928 O5 SV9 69 SV9 O6 O13 O 0 1 N N N N N N -8.770 62.558 87.831 1.839 -3.889 -0.545 O6 SV9 70 SV9 O7 O14 O 0 1 N N N N N N -7.477 64.115 89.771 4.221 -3.010 0.803 O7 SV9 71 SV9 O8 O15 O 0 1 N N N N N N -7.516 65.230 91.938 5.950 -2.511 2.719 O8 SV9 72 SV9 O9 O16 O 0 1 N N N N N N -5.368 64.306 91.010 6.192 -4.529 1.222 O9 SV9 73 SV9 P1 P1 P 0 1 N N N N N N -6.651 64.952 90.793 5.768 -3.111 1.236 P1 SV9 74 SV9 P2 P2 P 0 1 N N N N N N -7.032 66.848 88.685 8.234 -2.283 -0.184 P2 SV9 75 SV9 H1 H1 H 0 1 N N N N N N -7.087 51.560 85.221 -7.450 3.873 -1.745 H1 SV9 76 SV9 H2 H2 H 0 1 N N N N N N -7.858 58.536 80.220 -6.412 -1.079 0.597 H2 SV9 77 SV9 H3 H3 H 0 1 N N N N N N -5.373 56.213 82.890 -6.585 -0.547 -3.006 H3 SV9 78 SV9 H4 H4 H 0 1 N N N N N N -6.979 56.181 83.694 -8.078 -1.447 -2.642 H4 SV9 79 SV9 H5 H5 H 0 1 N N N N N N -7.635 61.471 79.311 -6.896 0.016 3.472 H5 SV9 80 SV9 H6 H6 H 0 1 N N N N N N -5.845 61.471 79.467 -5.424 1.017 3.448 H6 SV9 81 SV9 H7 H7 H 0 1 N N N N N N -6.688 60.036 78.791 -6.448 0.905 1.997 H7 SV9 82 SV9 H8 H8 H 0 1 N N N N N N -7.352 54.351 81.721 -5.968 -0.602 -0.605 H8 SV9 83 SV9 H9 H9 H 0 1 N N N N N N -6.189 55.474 80.940 -7.460 -1.502 -0.241 H9 SV9 84 SV9 H10 H10 H 0 1 N N N N N N -7.803 53.521 83.952 -6.324 1.760 -2.310 H10 SV9 85 SV9 H11 H11 H 0 1 N N N N N N -8.131 57.613 86.911 -2.244 -6.445 0.324 H11 SV9 86 SV9 H12 H12 H 0 1 N N N N N N -6.114 60.928 84.148 -2.653 -2.752 3.324 H12 SV9 87 SV9 H13 H13 H 0 1 N N N N N N -10.628 54.896 85.244 -4.821 -7.013 -2.697 H13 SV9 88 SV9 H14 H14 H 0 1 N N N N N N -6.407 63.098 81.951 -4.420 -1.081 5.260 H14 SV9 89 SV9 H15 H15 H 0 1 N N N N N N -4.908 62.404 82.656 -2.794 -0.713 4.636 H15 SV9 90 SV9 H16 H16 H 0 1 N N N N N N -5.188 62.322 80.884 -4.125 0.442 4.386 H16 SV9 91 SV9 H17 H17 H 0 1 N N N N N N -2.922 51.928 87.061 -8.281 5.420 -1.328 H17 SV9 92 SV9 H18 H18 H 0 1 N N N N N N -2.179 49.929 88.270 -9.409 7.528 -0.758 H18 SV9 93 SV9 H19 H19 H 0 1 N N N N N N -3.361 47.800 87.980 -11.760 7.518 -0.041 H19 SV9 94 SV9 H20 H20 H 0 1 N N N N N N -3.954 46.393 85.313 -13.600 3.251 0.074 H20 SV9 95 SV9 H21 H21 H 0 1 N N N N N N -5.149 44.282 84.941 -15.953 3.254 0.792 H21 SV9 96 SV9 H22 H22 H 0 1 N N N N N N -7.430 43.983 85.796 -17.071 5.373 1.347 H22 SV9 97 SV9 H23 H23 H 0 1 N N N N N N -8.518 45.796 87.038 -15.844 7.500 1.188 H23 SV9 98 SV9 H24 H24 H 0 1 N N N N N N -7.331 47.910 87.423 -13.487 7.514 0.484 H24 SV9 99 SV9 H25 H25 H 0 1 N N N N N N -6.080 49.683 85.302 -11.878 3.258 -0.471 H25 SV9 100 SV9 H26 H26 H 0 1 N N N N N N -3.102 53.053 85.285 -11.045 1.709 -0.880 H26 SV9 101 SV9 H27 H27 H 0 1 N N N N N N -3.829 54.990 83.996 -9.904 -0.395 -1.449 H27 SV9 102 SV9 H28 H28 H 0 1 N N N N N N -6.362 58.545 86.608 -1.615 -5.516 1.692 H28 SV9 103 SV9 H29 H29 H 0 1 N N N N N N -5.709 59.798 85.499 -1.757 -4.079 2.733 H29 SV9 104 SV9 H30 H30 H 0 1 N N N N N N -8.279 59.816 87.101 -0.787 -2.681 0.923 H30 SV9 105 SV9 H31 H31 H 0 1 N N N N N N -6.365 62.097 86.595 0.862 -5.164 1.581 H31 SV9 106 SV9 H32 H32 H 0 1 N N N N N N -7.779 61.332 89.165 1.684 -2.330 0.802 H32 SV9 107 SV9 H33 H33 H 0 1 N N N N N N -5.960 62.726 89.598 3.146 -3.448 2.512 H33 SV9 108 SV9 H34 H34 H 0 1 N N N N N N -6.271 63.730 88.141 3.374 -4.803 1.381 H34 SV9 109 SV9 H35 H35 H 0 1 N N N N N N -5.982 68.915 90.473 10.343 -1.282 -1.964 H35 SV9 110 SV9 H36 H36 H 0 1 N N N N N N -5.671 68.938 88.704 10.594 -0.546 -0.363 H36 SV9 111 SV9 H37 H37 H 0 1 N N N N N N -7.603 70.692 90.268 9.278 0.872 -2.727 H37 SV9 112 SV9 H38 H38 H 0 1 N N N N N N -6.992 73.025 89.543 9.928 3.558 -2.066 H38 SV9 113 SV9 H39 H39 H 0 1 N N N N N N -3.627 72.273 87.739 10.196 2.495 1.578 H39 SV9 114 SV9 H40 H40 H 0 1 N N N N N N -6.225 77.066 91.033 11.246 8.139 -1.494 H40 SV9 115 SV9 H41 H41 H 0 1 N N N N N N -6.096 71.825 86.866 12.374 2.247 -0.750 H41 SV9 116 SV9 H42 H42 H 0 1 N N N N N N -7.628 70.104 87.394 12.092 0.368 -2.132 H42 SV9 117 SV9 H43 H43 H 0 1 N N N N N N -2.244 77.879 89.743 10.859 6.831 3.605 H43 SV9 118 SV9 H44 H44 H 0 1 N N N N N N -1.521 76.415 89.731 11.138 8.395 3.058 H44 SV9 119 SV9 H45 H45 H 0 1 N N N N N N -8.193 65.806 87.443 8.028 -3.445 -2.029 H45 SV9 120 SV9 H46 H46 H 0 1 N N N N N N -7.089 73.917 86.969 13.293 3.044 -2.843 H46 SV9 121 SV9 H47 H47 H 0 1 N N N N N N -9.445 70.532 88.778 12.257 1.666 -4.157 H47 SV9 122 SV9 H48 H48 H 0 1 N N N N N N -8.713 61.662 85.791 -0.571 -5.203 -0.498 H48 SV9 123 SV9 H49 H49 H 0 1 N N N N N N -5.231 61.303 88.431 0.574 -2.650 3.004 H49 SV9 124 SV9 H50 H50 H 0 1 N N N N N N -9.258 63.005 88.513 1.971 -4.844 -0.622 H50 SV9 125 SV9 H51 H51 H 0 1 N N N N N N -7.094 64.929 92.734 5.691 -1.584 2.802 H51 SV9 126 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SV9 C8 C7 SING N N 1 SV9 O1 C9 DOUB N N 2 SV9 C7 C6 DOUB Y N 3 SV9 C7 C2 SING Y N 4 SV9 C6 C5 SING Y N 5 SV9 C9 C10 SING N N 6 SV9 C9 N1 SING N N 7 SV9 C10 C11 SING N N 8 SV9 C1 C2 SING N N 9 SV9 C2 C3 DOUB Y N 10 SV9 C5 N1 SING N N 11 SV9 C5 C4 DOUB Y N 12 SV9 N1 C30 SING N N 13 SV9 O3 C33 DOUB N N 14 SV9 C11 C12 SING N N 15 SV9 C3 C4 SING Y N 16 SV9 C4 N4 SING N N 17 SV9 C30 C33 SING N N 18 SV9 C30 C31 DOUB N N 19 SV9 C12 C13 DOUB Y N 20 SV9 C12 C29 SING Y N 21 SV9 C33 N3 SING N N 22 SV9 C13 C14 SING Y N 23 SV9 C29 C28 DOUB Y N 24 SV9 N4 C31 SING N N 25 SV9 N4 C34 SING N N 26 SV9 C31 N2 SING N N 27 SV9 C14 C15 DOUB Y N 28 SV9 C28 C15 SING Y N 29 SV9 N3 C32 SING N N 30 SV9 C15 C16 SING N N 31 SV9 O4 C35 SING N N 32 SV9 C23 C22 DOUB Y N 33 SV9 C23 C24 SING Y N 34 SV9 C22 C21 SING Y N 35 SV9 C34 C35 SING N N 36 SV9 C27 C16 DOUB Y N 37 SV9 C27 C20 SING Y N 38 SV9 C24 C25 DOUB Y N 39 SV9 N2 C32 SING N N 40 SV9 C16 C17 SING Y N 41 SV9 C32 O2 DOUB N N 42 SV9 C21 C20 SING N N 43 SV9 C21 C26 DOUB Y N 44 SV9 C35 C36 SING N N 45 SV9 C20 C19 DOUB Y N 46 SV9 C25 C26 SING Y N 47 SV9 C17 C18 DOUB Y N 48 SV9 O15 C47 SING N N 49 SV9 C36 O5 SING N N 50 SV9 C36 C37 SING N N 51 SV9 C19 C18 SING Y N 52 SV9 C47 C48 SING N N 53 SV9 C47 C41 SING N N 54 SV9 O12 P2 DOUB N N 55 SV9 O6 C37 SING N N 56 SV9 C48 O16 SING N N 57 SV9 C48 C40 SING N N 58 SV9 C42 N6 DOUB Y N 59 SV9 C42 N5 SING Y N 60 SV9 O11 P2 SING N N 61 SV9 N6 C43 SING Y N 62 SV9 C37 C38 SING N N 63 SV9 P2 O13 SING N N 64 SV9 P2 O10 SING N N 65 SV9 N5 C41 SING N N 66 SV9 N5 C46 SING Y N 67 SV9 C41 O14 SING N N 68 SV9 C38 O7 SING N N 69 SV9 C43 C46 DOUB Y N 70 SV9 C43 C44 SING Y N 71 SV9 O13 C39 SING N N 72 SV9 N7 C44 SING N N 73 SV9 C46 N9 SING Y N 74 SV9 C40 O14 SING N N 75 SV9 C40 C39 SING N N 76 SV9 C44 N8 DOUB Y N 77 SV9 O7 P1 SING N N 78 SV9 O10 P1 SING N N 79 SV9 N9 C45 DOUB Y N 80 SV9 N8 C45 SING Y N 81 SV9 P1 O9 DOUB N N 82 SV9 P1 O8 SING N N 83 SV9 C14 H1 SING N N 84 SV9 C6 H2 SING N N 85 SV9 C11 H3 SING N N 86 SV9 C11 H4 SING N N 87 SV9 C8 H5 SING N N 88 SV9 C8 H6 SING N N 89 SV9 C8 H7 SING N N 90 SV9 C10 H8 SING N N 91 SV9 C10 H9 SING N N 92 SV9 C13 H10 SING N N 93 SV9 N2 H11 SING N N 94 SV9 C3 H12 SING N N 95 SV9 N3 H13 SING N N 96 SV9 C1 H14 SING N N 97 SV9 C1 H15 SING N N 98 SV9 C1 H16 SING N N 99 SV9 C17 H17 SING N N 100 SV9 C18 H18 SING N N 101 SV9 C19 H19 SING N N 102 SV9 C22 H20 SING N N 103 SV9 C23 H21 SING N N 104 SV9 C24 H22 SING N N 105 SV9 C25 H23 SING N N 106 SV9 C26 H24 SING N N 107 SV9 C27 H25 SING N N 108 SV9 C28 H26 SING N N 109 SV9 C29 H27 SING N N 110 SV9 C34 H28 SING N N 111 SV9 C34 H29 SING N N 112 SV9 C35 H30 SING N N 113 SV9 C36 H31 SING N N 114 SV9 C37 H32 SING N N 115 SV9 C38 H33 SING N N 116 SV9 C38 H34 SING N N 117 SV9 C39 H35 SING N N 118 SV9 C39 H36 SING N N 119 SV9 C40 H37 SING N N 120 SV9 C41 H38 SING N N 121 SV9 C42 H39 SING N N 122 SV9 C45 H40 SING N N 123 SV9 C47 H41 SING N N 124 SV9 C48 H42 SING N N 125 SV9 N7 H43 SING N N 126 SV9 N7 H44 SING N N 127 SV9 O11 H45 SING N N 128 SV9 O15 H46 SING N N 129 SV9 O16 H47 SING N N 130 SV9 O4 H48 SING N N 131 SV9 O5 H49 SING N N 132 SV9 O6 H50 SING N N 133 SV9 O8 H51 SING N N 134 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SV9 InChI InChI 1.06 "InChI=1S/C48H51N9O16P2/c1-25-17-32-33(18-26(25)2)57(37(60)16-13-27-11-14-29(15-12-27)31-10-6-9-30(19-31)28-7-4-3-5-8-28)39-45(53-48(65)54-46(39)64)55(32)20-34(58)40(61)35(59)21-70-74(66,67)73-75(68,69)71-22-36-41(62)42(63)47(72-36)56-24-52-38-43(49)50-23-51-44(38)56/h3-12,14-15,17-19,23-24,34-36,40-42,47,58-59,61-63H,13,16,20-22H2,1-2H3,(H,66,67)(H,68,69)(H2,49,50,51)(H2,53,54,64,65)/t34-,35+,36+,40-,41+,42+,47+/m0/s1" SV9 InChIKey InChI 1.06 HCIJKGPDCNLZBW-KDSHSZFRSA-N SV9 SMILES_CANONICAL CACTVS 3.385 "Cc1cc2N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(=O)O[P](O)(=O)OC[C@H]3O[C@H]([C@H](O)[C@@H]3O)n4cnc5c(N)ncnc45)C6=C(N(C(=O)CCc7ccc(cc7)c8cccc(c8)c9ccccc9)c2cc1C)C(=O)NC(=O)N6" SV9 SMILES CACTVS 3.385 "Cc1cc2N(C[CH](O)[CH](O)[CH](O)CO[P](O)(=O)O[P](O)(=O)OC[CH]3O[CH]([CH](O)[CH]3O)n4cnc5c(N)ncnc45)C6=C(N(C(=O)CCc7ccc(cc7)c8cccc(c8)c9ccccc9)c2cc1C)C(=O)NC(=O)N6" SV9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cc1C)N(C3=C(N2C[C@@H]([C@@H]([C@@H](COP(=O)(O)OP(=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)O)O)O)NC(=O)NC3=O)C(=O)CCc7ccc(cc7)c8cccc(c8)c9ccccc9" SV9 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc2c(cc1C)N(C3=C(N2CC(C(C(COP(=O)(O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)O)O)O)NC(=O)NC3=O)C(=O)CCc7ccc(cc7)c8cccc(c8)c9ccccc9" # _pdbx_chem_comp_identifier.comp_id SV9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-5-[7,8-dimethyl-2,4-bis(oxidanylidene)-5-[3-[4-(3-phenylphenyl)phenyl]propanoyl]-1~{H}-benzo[g]pteridin-10-yl]-2,3,4-tris(oxidanyl)pentyl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SV9 "Create component" 2022-12-19 PDBE SV9 "Modify formula" 2023-05-15 PDBE SV9 "Initial release" 2024-06-05 RCSB #