data_SVS # _chem_comp.id SVS _chem_comp.name "5'-deoxy-5'-({[2-(2-hydroxyphenyl)ethyl]sulfonyl}amino)adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H22 N6 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-04-12 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 450.469 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SVS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3RG2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SVS S S S 0 1 N N N N N N -108.650 -75.227 41.849 -3.023 -1.762 -1.222 S SVS 1 SVS N1 N1 N 0 1 Y N N N N N -101.456 -68.056 40.921 7.270 1.610 -0.474 N1 SVS 2 SVS C2 C2 C 0 1 Y N N N N N -102.656 -67.542 40.610 7.059 0.308 -0.533 C2 SVS 3 SVS N3 N3 N 0 1 Y N N N N N -103.753 -68.316 40.538 5.859 -0.220 -0.409 N3 SVS 4 SVS C4 C4 C 0 1 Y N N N N N -103.678 -69.649 40.781 4.796 0.554 -0.215 C4 SVS 5 SVS C5 C5 C 0 1 Y N N N N N -102.451 -70.210 41.106 4.968 1.946 -0.144 C5 SVS 6 SVS C6 C6 C 0 1 Y N N N N N -101.319 -69.384 41.175 6.268 2.462 -0.283 C6 SVS 7 SVS N6 N6 N 0 1 N N N N N N -100.092 -69.884 41.498 6.500 3.825 -0.222 N6 SVS 8 SVS N7 N7 N 0 1 Y N N N N N -102.667 -71.532 41.299 3.744 2.491 0.055 N7 SVS 9 SVS C8 C8 C 0 1 Y N N N N N -103.984 -71.777 41.100 2.853 1.544 0.110 C8 SVS 10 SVS N9 N9 N 0 1 Y N N N N N -104.589 -70.629 40.778 3.452 0.330 -0.051 N9 SVS 11 SVS "C1'" "C1'" C 0 1 N N R N N N -106.034 -70.477 40.505 2.784 -0.973 -0.051 "C1'" SVS 12 SVS C14 C14 C 0 1 Y N N N N N -104.376 -77.663 41.463 -5.809 2.123 -0.304 C14 SVS 13 SVS O14 O14 O 0 1 N N N N N N -105.262 -78.475 40.796 -5.422 2.244 -1.602 O14 SVS 14 SVS C15 C15 C 0 1 Y N N N N N -103.015 -77.932 41.267 -6.302 3.225 0.379 C15 SVS 15 SVS C16 C16 C 0 1 Y N N N N N -102.023 -77.173 41.887 -6.700 3.099 1.696 C16 SVS 16 SVS C17 C17 C 0 1 Y N N N N N -102.400 -76.130 42.724 -6.608 1.875 2.333 C17 SVS 17 SVS C18 C18 C 0 1 Y N N N N N -103.754 -75.853 42.928 -6.117 0.775 1.654 C18 SVS 18 SVS C19 C19 C 0 1 Y N N N N N -104.766 -76.589 42.298 -5.717 0.896 0.337 C19 SVS 19 SVS O1P O1P O 0 1 N N N N N N -109.791 -75.917 41.287 -3.251 -1.627 -2.618 O1P SVS 20 SVS "C2'" "C2'" C 0 1 N N R N N N -106.396 -70.300 39.045 2.770 -1.570 1.374 "C2'" SVS 21 SVS "O2'" "O2'" O 0 1 N N N N N N -107.210 -69.129 38.977 3.829 -2.515 1.532 "O2'" SVS 22 SVS C21 C21 C 0 1 N N N N N N -106.215 -76.204 42.651 -5.188 -0.304 -0.404 C21 SVS 23 SVS C22 C22 C 0 1 N N N N N N -107.178 -75.969 41.468 -3.660 -0.317 -0.330 C22 SVS 24 SVS O2P O2P O 0 1 N N N N N N -108.827 -75.134 43.265 -3.363 -2.960 -0.538 O2P SVS 25 SVS "C3'" "C3'" C 0 1 N N S N N N -107.277 -71.477 38.700 1.396 -2.270 1.475 "C3'" SVS 26 SVS "O3'" "O3'" O 0 1 N N N N N N -108.418 -71.075 37.935 1.564 -3.672 1.696 "O3'" SVS 27 SVS "C4'" "C4'" C 0 1 N N R N N N -107.738 -71.953 40.051 0.743 -2.014 0.098 "C4'" SVS 28 SVS "O4'" "O4'" O 0 1 N N N N N N -106.691 -71.648 40.956 1.391 -0.825 -0.402 "O4'" SVS 29 SVS "C5'" "C5'" C 0 1 N N N N N N -107.955 -73.446 40.074 -0.760 -1.775 0.258 "C5'" SVS 30 SVS "N5'" "N5'" N 0 1 N N N N N N -108.662 -73.740 41.296 -1.378 -1.653 -1.064 "N5'" SVS 31 SVS H2 H2 H 0 1 N N N N N N -102.742 -66.484 40.413 7.902 -0.349 -0.689 H2 SVS 32 SVS HN6 HN6 H 0 1 N N N N N N -99.420 -69.143 41.501 7.402 4.168 -0.319 HN6 SVS 33 SVS HN6A HN6A H 0 0 N N N N N N -100.131 -70.302 42.405 5.760 4.437 -0.082 HN6A SVS 34 SVS H8 H8 H 0 1 N N N N N N -104.466 -72.740 41.187 1.794 1.697 0.261 H8 SVS 35 SVS "H1'" "H1'" H 0 1 N N N N N N -106.344 -69.559 41.026 3.279 -1.653 -0.743 "H1'" SVS 36 SVS HO14 HO14 H 0 0 N N N N N N -104.782 -79.126 40.297 -6.130 2.080 -2.240 HO14 SVS 37 SVS H15 H15 H 0 1 N N N N N N -102.727 -78.747 40.620 -6.374 4.181 -0.118 H15 SVS 38 SVS H16 H16 H 0 1 N N N N N N -100.979 -77.392 41.719 -7.083 3.957 2.228 H16 SVS 39 SVS H17 H17 H 0 1 N N N N N N -101.646 -75.534 43.217 -6.919 1.778 3.362 H17 SVS 40 SVS H18 H18 H 0 1 N N N N N N -104.029 -75.047 43.592 -6.045 -0.180 2.154 H18 SVS 41 SVS "H2'" "H2'" H 0 1 N N N N N N -105.519 -70.227 38.385 2.850 -0.779 2.120 "H2'" SVS 42 SVS "HO2'" "HO2'" H 0 0 N N N N N N -107.466 -68.973 38.076 3.867 -2.921 2.409 "HO2'" SVS 43 SVS H21 H21 H 0 1 N N N N N N -106.632 -77.027 43.250 -5.581 -1.214 0.050 H21 SVS 44 SVS H22 H22 H 0 1 N N N N N N -107.409 -76.952 41.032 -3.347 -0.367 0.713 H22 SVS 45 SVS "H3'" "H3'" H 0 1 N N N N N N -106.749 -72.232 38.099 0.798 -1.826 2.270 "H3'" SVS 46 SVS "HO3'" "HO3'" H 0 0 N N N N N N -108.950 -71.836 37.735 2.024 -3.888 2.519 "HO3'" SVS 47 SVS "H4'" "H4'" H 0 1 N N N N N N -108.691 -71.469 40.309 0.923 -2.856 -0.570 "H4'" SVS 48 SVS "H5'" "H5'" H 0 1 N N N N N N -108.547 -73.762 39.202 -1.206 -2.614 0.792 "H5'" SVS 49 SVS "H5'A" "H5'A" H 0 0 N N N N N N -106.991 -73.975 40.051 -0.924 -0.857 0.822 "H5'A" SVS 50 SVS "HN5'" "HN5'" H 0 0 N N N N N N -108.249 -73.170 42.006 -0.824 -1.509 -1.847 "HN5'" SVS 51 SVS H211 H211 H 0 0 N N N N N N -106.171 -75.266 43.224 -5.501 -0.254 -1.447 H211 SVS 52 SVS H221 H221 H 0 0 N N N N N N -106.660 -75.320 40.747 -3.267 0.593 -0.784 H221 SVS 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SVS S O2P DOUB N N 1 SVS N1 C6 SING Y N 2 SVS C2 N1 DOUB Y N 3 SVS C2 H2 SING N N 4 SVS N3 C2 SING Y N 5 SVS N3 C4 DOUB Y N 6 SVS C4 C5 SING Y N 7 SVS C5 C6 DOUB Y N 8 SVS C5 N7 SING Y N 9 SVS C6 N6 SING N N 10 SVS N6 HN6 SING N N 11 SVS N6 HN6A SING N N 12 SVS C8 N7 DOUB Y N 13 SVS C8 H8 SING N N 14 SVS N9 C4 SING Y N 15 SVS N9 C8 SING Y N 16 SVS "C1'" N9 SING N N 17 SVS "C1'" "O4'" SING N N 18 SVS "C1'" "H1'" SING N N 19 SVS C14 C19 SING Y N 20 SVS O14 C14 SING N N 21 SVS O14 HO14 SING N N 22 SVS C15 C14 DOUB Y N 23 SVS C15 C16 SING Y N 24 SVS C15 H15 SING N N 25 SVS C16 C17 DOUB Y N 26 SVS C16 H16 SING N N 27 SVS C17 C18 SING Y N 28 SVS C17 H17 SING N N 29 SVS C18 H18 SING N N 30 SVS C19 C18 DOUB Y N 31 SVS C19 C21 SING N N 32 SVS O1P S DOUB N N 33 SVS "C2'" "C1'" SING N N 34 SVS "C2'" "H2'" SING N N 35 SVS "O2'" "C2'" SING N N 36 SVS "O2'" "HO2'" SING N N 37 SVS C21 H21 SING N N 38 SVS C22 S SING N N 39 SVS C22 C21 SING N N 40 SVS C22 H22 SING N N 41 SVS "C3'" "C2'" SING N N 42 SVS "C3'" "C4'" SING N N 43 SVS "C3'" "H3'" SING N N 44 SVS "O3'" "C3'" SING N N 45 SVS "O3'" "HO3'" SING N N 46 SVS "C4'" "C5'" SING N N 47 SVS "C4'" "O4'" SING N N 48 SVS "C4'" "H4'" SING N N 49 SVS "C5'" "N5'" SING N N 50 SVS "C5'" "H5'" SING N N 51 SVS "C5'" "H5'A" SING N N 52 SVS "N5'" S SING N N 53 SVS "N5'" "HN5'" SING N N 54 SVS C21 H211 SING N N 55 SVS C22 H221 SING N N 56 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SVS SMILES ACDLabs 12.01 "O=S(=O)(NCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)CCc4ccccc4O" SVS SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN[S](=O)(=O)CCc4ccccc4O)[C@@H](O)[C@H]3O" SVS SMILES CACTVS 3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN[S](=O)(=O)CCc4ccccc4O)[CH](O)[CH]3O" SVS SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1ccc(c(c1)CCS(=O)(=O)NC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O)O" SVS SMILES "OpenEye OEToolkits" 1.7.2 "c1ccc(c(c1)CCS(=O)(=O)NCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O)O" SVS InChI InChI 1.03 "InChI=1S/C18H22N6O6S/c19-16-13-17(21-8-20-16)24(9-22-13)18-15(27)14(26)12(30-18)7-23-31(28,29)6-5-10-3-1-2-4-11(10)25/h1-4,8-9,12,14-15,18,23,25-27H,5-7H2,(H2,19,20,21)/t12-,14-,15-,18-/m1/s1" SVS InChIKey InChI 1.03 NIEGSPNRJDKALY-SCFUHWHPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SVS "SYSTEMATIC NAME" ACDLabs 12.01 "5'-deoxy-5'-({[2-(2-hydroxyphenyl)ethyl]sulfonyl}amino)adenosine" SVS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "N-[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-2-(2-hydroxyphenyl)ethanesulfonamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SVS "Create component" 2011-05-09 RCSB SVS "Modify formula" 2011-05-09 RCSB SVS "Modify descriptor" 2011-06-04 RCSB SVS "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id SVS _pdbx_chem_comp_pcm.modified_residue_id 4HH _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C21 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SU _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #