data_SVZ # _chem_comp.id SVZ _chem_comp.name "O-[(S)-HYDROXY(ISOPROPYLAMINO)PHOSPHORYL]-L-SERINE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H15 N2 O5 P" _chem_comp.mon_nstd_parent_comp_id SER _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-02-13 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 226.167 _chem_comp.one_letter_code S _chem_comp.three_letter_code SVZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2JGK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SVZ N N N 0 1 N N N N N N 26.158 12.354 14.294 -0.787 4.645 -2.191 N SVZ 1 SVZ CA CA C 0 1 N N S N N N 27.268 12.589 13.351 -0.800 4.032 -0.885 CA SVZ 2 SVZ C C C 0 1 N N N N N N 28.520 11.774 13.725 -1.041 5.133 0.127 C SVZ 3 SVZ O O O 0 1 N N N N N N 28.450 10.554 13.763 -0.606 6.275 0.043 O SVZ 4 SVZ CB CB C 0 1 N N N N N N 27.553 14.086 13.181 0.507 3.311 -0.590 CB SVZ 5 SVZ OG OG O 0 1 N N N N N N 28.416 14.332 12.069 0.453 2.767 0.718 OG SVZ 6 SVZ O4 O4 O 0 1 N N N N N N 30.129 15.278 13.522 1.548 1.641 2.782 O4 SVZ 7 SVZ P1 P1 P 0 1 N N R N N N 29.254 15.676 12.350 1.717 1.935 1.314 P1 SVZ 8 SVZ O2 O2 O 0 1 N N N N N N 29.100 17.151 12.005 2.949 2.963 1.056 O2 SVZ 9 SVZ N3 N3 N 0 1 N N N N N N 29.804 14.789 10.951 1.985 0.631 0.326 N3 SVZ 10 SVZ C5 C5 C 0 1 N N N N N N 29.731 15.461 9.664 0.980 -0.420 0.267 C5 SVZ 11 SVZ C7 C7 C 0 1 N N N N N N 31.135 15.731 9.152 1.275 -1.453 1.344 C7 SVZ 12 SVZ C6 C6 C 0 1 N N N N N N 28.904 14.664 8.656 0.992 -1.037 -1.124 C6 SVZ 13 SVZ OXT OXT O 0 1 N Y N N N N 29.650 12.414 14.015 -1.768 4.696 1.188 OXT SVZ 14 SVZ HN1 1HN H 0 1 N N N N N N 26.444 12.534 15.256 -0.817 5.647 -2.259 HN1 SVZ 15 SVZ HN2 2HN H 0 1 N N N N N N 25.329 12.894 14.046 -0.952 4.070 -3.000 HN2 SVZ 16 SVZ HA HA H 0 1 N N N N N N 26.948 12.215 12.350 -1.650 3.342 -0.898 HA SVZ 17 SVZ HBC1 1HBC H 0 0 N N N N N N 27.958 14.533 14.119 1.355 4.003 -0.630 HBC1 SVZ 18 SVZ HBC2 2HBC H 0 0 N N N N N N 26.609 14.675 13.103 0.689 2.498 -1.301 HBC2 SVZ 19 SVZ HOT HOT H 0 1 N N N N N N 30.422 11.911 14.246 -1.924 5.363 1.891 HOT SVZ 20 SVZ H2 H2 H 0 1 N N N N N N 29.595 17.945 12.171 3.017 3.765 1.616 H2 SVZ 21 SVZ H3 H3 H 0 1 N N N N N N 29.307 13.900 10.897 2.901 0.192 0.417 H3 SVZ 22 SVZ H5 H5 H 0 1 N N N N N N 29.207 16.436 9.799 0.002 0.037 0.455 H5 SVZ 23 SVZ H7C1 1H7C H 0 0 N N N N N N 31.753 14.804 9.109 0.525 -2.250 1.336 H7C1 SVZ 24 SVZ H7C2 2H7C H 0 0 N N N N N N 31.750 16.298 9.889 2.261 -1.911 1.200 H7C2 SVZ 25 SVZ H7C3 3H7C H 0 0 N N N N N N 31.079 16.246 8.165 1.269 -0.991 2.338 H7C3 SVZ 26 SVZ H6C1 1H6C H 0 0 N N N N N N 27.888 14.436 9.054 0.786 -0.278 -1.887 H6C1 SVZ 27 SVZ H6C2 2H6C H 0 0 N N N N N N 29.287 13.622 8.549 0.232 -1.820 -1.210 H6C2 SVZ 28 SVZ H6C3 3H6C H 0 0 N N N N N N 28.848 15.179 7.669 1.967 -1.480 -1.356 H6C3 SVZ 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SVZ N CA SING N N 1 SVZ CA C SING N N 2 SVZ C O DOUB N N 3 SVZ CA CB SING N N 4 SVZ CB OG SING N N 5 SVZ OG P1 SING N N 6 SVZ O4 P1 DOUB N N 7 SVZ P1 O2 SING N N 8 SVZ P1 N3 SING N N 9 SVZ N3 C5 SING N N 10 SVZ C5 C7 SING N N 11 SVZ C5 C6 SING N N 12 SVZ C OXT SING N N 13 SVZ N HN1 SING N N 14 SVZ N HN2 SING N N 15 SVZ CA HA SING N N 16 SVZ CB HBC1 SING N N 17 SVZ CB HBC2 SING N N 18 SVZ OXT HOT SING N N 19 SVZ O2 H2 SING N N 20 SVZ N3 H3 SING N N 21 SVZ C5 H5 SING N N 22 SVZ C7 H7C1 SING N N 23 SVZ C7 H7C2 SING N N 24 SVZ C7 H7C3 SING N N 25 SVZ C6 H6C1 SING N N 26 SVZ C6 H6C2 SING N N 27 SVZ C6 H6C3 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SVZ SMILES ACDLabs 10.04 "O=P(O)(OCC(N)C(=O)O)NC(C)C" SVZ SMILES_CANONICAL CACTVS 3.341 "CC(C)N[P@](O)(=O)OC[C@H](N)C(O)=O" SVZ SMILES CACTVS 3.341 "CC(C)N[P](O)(=O)OC[CH](N)C(O)=O" SVZ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)N[P@@](=O)(O)OC[C@@H](C(=O)O)N" SVZ SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)NP(=O)(O)OCC(C(=O)O)N" SVZ InChI InChI 1.03 "InChI=1S/C6H15N2O5P/c1-4(2)8-14(11,12)13-3-5(7)6(9)10/h4-5H,3,7H2,1-2H3,(H,9,10)(H2,8,11,12)/t5-/m0/s1" SVZ InChIKey InChI 1.03 UFRVALQULWCEQX-YFKPBYRVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SVZ "SYSTEMATIC NAME" ACDLabs 10.04 "O-{(R)-hydroxy[(1-methylethyl)amino]phosphoryl}-L-serine" SVZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-3-[hydroxy-(propan-2-ylamino)phosphoryl]oxy-propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SVZ "Create component" 2007-02-13 RCSB SVZ "Modify descriptor" 2011-06-04 RCSB SVZ "Modify parent residue" 2015-01-20 EBI SVZ "Modify one letter code" 2015-01-20 EBI SVZ "Modify model coordinates code" 2015-01-20 EBI SVZ "Modify name" 2015-01-20 EBI SVZ "Modify leaving atom flag" 2015-01-20 EBI SVZ "Modify PCM" 2024-09-27 PDBE #