data_SWC
#
_chem_comp.id SWC
_chem_comp.name "N-{(2R)-2-hydroxy-3,3-dimethyl-4-[(trihydroxy-lambda~5~-phosphanyl)oxy]butanoyl}-beta-alanyl-N-(2-{4-[fluoro(dihydroxy)-lambda~4~-sulfanyl]phenyl}ethyl)-beta-alaninamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H33 F N3 O10 P S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-07-12
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 557.527
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code SWC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8DLE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
SWC C1 C1 C 0 1 N N N N N N -7.255 31.664 -33.735 -6.462 -0.239 -1.709 C1 SWC 1
SWC C12 C2 C 0 1 N N N N N N -7.995 32.305 -34.903 -5.386 -0.292 -0.622 C12 SWC 2
SWC C14 C3 C 0 1 N N N N N N -8.987 34.527 -34.952 -2.977 -0.624 -0.470 C14 SWC 3
SWC C15 C4 C 0 1 N N N N N N -8.790 35.980 -34.594 -1.633 -0.877 -1.106 C15 SWC 4
SWC C16 C5 C 0 1 N N N N N N -8.327 36.073 -33.145 -0.557 -0.930 -0.019 C16 SWC 5
SWC C19 C6 C 0 1 N N N N N N -9.783 36.403 -31.235 1.852 -1.263 0.133 C19 SWC 6
SWC C2 C7 C 0 1 Y N N N N N -8.098 31.736 -32.482 -7.805 0.014 -1.074 C2 SWC 7
SWC C20 C8 C 0 1 N N N N N N -11.212 36.203 -30.785 3.195 -1.515 -0.502 C20 SWC 8
SWC C21 C9 C 0 1 N N N N N N -12.131 36.265 -32.000 4.271 -1.568 0.584 C21 SWC 9
SWC C24 C10 C 0 1 N N N N N N -12.580 38.217 -33.391 6.680 -1.901 0.736 C24 SWC 10
SWC C25 C11 C 0 1 N N R N N N -12.064 39.117 -34.479 8.004 -2.264 0.115 C25 SWC 11
SWC C26 C12 C 0 1 N N N N N N -12.622 38.721 -35.844 8.547 -1.065 -0.667 C26 SWC 12
SWC C27 C13 C 0 1 N N N N N N -14.009 39.317 -36.036 8.602 0.159 0.250 C27 SWC 13
SWC C3 C14 C 0 1 Y N N N N N -9.247 30.961 -32.375 -8.251 1.309 -0.893 C3 SWC 14
SWC C30 C15 C 0 1 N N N N N N -12.692 37.206 -35.992 9.953 -1.384 -1.177 C30 SWC 15
SWC C31 C16 C 0 1 N N N N N N -11.700 39.274 -36.925 7.627 -0.773 -1.854 C31 SWC 16
SWC C4 C17 C 0 1 Y N N N N N -10.022 31.021 -31.222 -9.483 1.541 -0.310 C4 SWC 17
SWC C5 C18 C 0 1 Y N N N N N -9.646 31.853 -30.174 -10.269 0.477 0.091 C5 SWC 18
SWC C6 C19 C 0 1 Y N N N N N -8.497 32.629 -30.281 -9.823 -0.819 -0.090 C6 SWC 19
SWC C7 C20 C 0 1 Y N N N N N -7.720 32.566 -31.433 -8.593 -1.051 -0.677 C7 SWC 20
SWC N13 N1 N 0 1 N N N N N N -7.911 33.752 -34.856 -4.080 -0.538 -1.240 N13 SWC 21
SWC N18 N2 N 0 1 N N N N N N -9.357 35.626 -32.226 0.748 -1.176 -0.637 N18 SWC 22
SWC N23 N3 N 0 1 N N N N N N -11.729 37.303 -32.931 5.576 -1.814 -0.033 N23 SWC 23
SWC O10 O1 O 0 1 N N N N N N -9.741 32.429 -27.770 -12.117 -0.856 1.007 O10 SWC 24
SWC O17 O2 O 0 1 N N N N N N -10.079 34.115 -35.308 -3.065 -0.499 0.733 O17 SWC 25
SWC O22 O3 O 0 1 N N N N N N -9.076 37.239 -30.696 1.764 -1.137 1.336 O22 SWC 26
SWC O28 O4 O 0 1 N N N N N N -13.718 38.339 -32.966 6.607 -1.686 1.927 O28 SWC 27
SWC O29 O5 O 0 1 N N N N N N -12.439 40.470 -34.190 8.930 -2.620 1.143 O29 SWC 28
SWC O32 O6 O 0 1 N N N N N N -14.571 38.825 -37.252 9.108 1.278 -0.481 O32 SWC 29
SWC O34 O7 O 0 1 N N N N N N -16.657 40.223 -36.847 10.149 2.627 1.382 O34 SWC 30
SWC O36 O8 O 0 1 N N N N N N -16.657 38.555 -38.691 10.011 3.713 -0.893 O36 SWC 31
SWC O9 O9 O 0 1 N N N N N N -11.647 32.808 -29.069 -13.361 1.059 1.555 O9 SWC 32
SWC P33 P1 P 0 1 N N N N N N -15.832 39.564 -37.927 9.302 2.736 0.173 P33 SWC 33
SWC S8 S1 S 0 1 N N N N N N -10.538 31.923 -28.852 -11.882 0.780 0.855 S8 SWC 34
SWC H1 H1 H 0 1 N N N N N N -7.045 30.611 -33.972 -6.233 0.566 -2.407 H1 SWC 35
SWC H2 H2 H 0 1 N N N N N N -6.308 32.198 -33.567 -6.485 -1.189 -2.243 H2 SWC 36
SWC H3 H3 H 0 1 N N N N N N -9.053 32.007 -34.863 -5.362 0.657 -0.087 H3 SWC 37
SWC H4 H4 H 0 1 N N N N N N -7.550 31.952 -35.845 -5.614 -1.097 0.077 H4 SWC 38
SWC H5 H5 H 0 1 N N N N N N -8.029 36.423 -35.254 -1.657 -1.827 -1.640 H5 SWC 39
SWC H6 H6 H 0 1 N N N N N N -9.740 36.522 -34.714 -1.405 -0.072 -1.804 H6 SWC 40
SWC H7 H7 H 0 1 N N N N N N -7.434 35.444 -33.014 -0.534 0.019 0.516 H7 SWC 41
SWC H8 H8 H 0 1 N N N N N N -8.075 37.119 -32.917 -0.786 -1.735 0.680 H8 SWC 42
SWC H9 H9 H 0 1 N N N N N N -11.488 36.995 -30.073 3.171 -2.465 -1.037 H9 SWC 43
SWC H10 H10 H 0 1 N N N N N N -11.311 35.222 -30.298 3.423 -0.710 -1.201 H10 SWC 44
SWC H11 H11 H 0 1 N N N N N N -13.157 36.470 -31.660 4.294 -0.619 1.119 H11 SWC 45
SWC H12 H12 H 0 1 N N N N N N -12.103 35.294 -32.516 4.042 -2.373 1.283 H12 SWC 46
SWC H13 H13 H 0 1 N N N N N N -10.968 39.036 -34.514 7.869 -3.108 -0.561 H13 SWC 47
SWC H14 H14 H 0 1 N N N N N N -13.934 40.413 -36.083 7.600 0.386 0.613 H14 SWC 48
SWC H15 H15 H 0 1 N N N N N N -14.652 39.029 -35.191 9.257 -0.050 1.095 H15 SWC 49
SWC H16 H16 H 0 1 N N N N N N -9.538 30.312 -33.188 -7.637 2.141 -1.206 H16 SWC 50
SWC H17 H17 H 0 1 N N N N N N -13.355 36.792 -35.218 9.930 -2.309 -1.753 H17 SWC 51
SWC H18 H18 H 0 1 N N N N N N -13.087 36.953 -36.987 10.303 -0.570 -1.812 H18 SWC 52
SWC H19 H19 H 0 1 N N N N N N -11.684 36.780 -35.879 10.630 -1.501 -0.330 H19 SWC 53
SWC H20 H20 H 0 1 N N N N N N -10.692 38.852 -36.799 6.655 -0.444 -1.488 H20 SWC 54
SWC H21 H21 H 0 1 N N N N N N -12.091 39.000 -37.916 8.068 0.012 -2.470 H21 SWC 55
SWC H22 H22 H 0 1 N N N N N N -11.652 40.370 -36.840 7.505 -1.677 -2.451 H22 SWC 56
SWC H23 H23 H 0 1 N N N N N N -10.916 30.421 -31.141 -9.831 2.553 -0.168 H23 SWC 57
SWC H24 H24 H 0 1 N N N N N N -8.208 33.281 -29.470 -10.437 -1.650 0.224 H24 SWC 58
SWC H25 H25 H 0 1 N N N N N N -6.823 33.162 -31.512 -8.246 -2.063 -0.822 H25 SWC 59
SWC H26 H26 H 0 1 N N N N N N -7.014 34.181 -34.748 -4.010 -0.638 -2.202 H26 SWC 60
SWC H27 H27 H 0 1 N N N N N N -9.754 34.715 -32.340 0.819 -1.276 -1.599 H27 SWC 61
SWC H28 H28 H 0 1 N N N N N N -10.778 37.333 -33.238 5.647 -1.914 -0.996 H28 SWC 62
SWC H29 H29 H 0 1 N N N N N N -10.268 32.472 -26.981 -11.792 -1.224 1.840 H29 SWC 63
SWC H30 H30 H 0 1 N N N N N N -13.146 40.474 -33.555 9.099 -1.915 1.783 H30 SWC 64
SWC H32 H32 H 0 1 N N N N N N -17.539 38.534 -38.338 10.159 4.610 -0.566 H32 SWC 65
SWC H33 H33 H 0 1 N N N N N N -12.178 32.850 -28.282 -13.586 1.995 1.640 H33 SWC 66
SWC F1 F1 F 0 1 N Y N N N N -11.094 30.412 -28.478 -12.368 1.543 -0.477 F1 SWC 67
SWC O1 O10 O 0 1 N Y N N N N -15.314 40.694 -38.950 7.864 3.338 0.578 O1 SWC 68
SWC H35 H35 H 0 1 N Y N N N N -15.630 41.545 -38.670 7.255 3.437 -0.167 H35 SWC 69
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
SWC O36 P33 SING N N 1
SWC P33 O32 SING N N 2
SWC P33 O34 DOUB N N 3
SWC O32 C27 SING N N 4
SWC C31 C26 SING N N 5
SWC C27 C26 SING N N 6
SWC C30 C26 SING N N 7
SWC C26 C25 SING N N 8
SWC O17 C14 DOUB N N 9
SWC C14 N13 SING N N 10
SWC C14 C15 SING N N 11
SWC C12 N13 SING N N 12
SWC C12 C1 SING N N 13
SWC C15 C16 SING N N 14
SWC C25 O29 SING N N 15
SWC C25 C24 SING N N 16
SWC C1 C2 SING N N 17
SWC C24 O28 DOUB N N 18
SWC C24 N23 SING N N 19
SWC C16 N18 SING N N 20
SWC N23 C21 SING N N 21
SWC C2 C3 DOUB Y N 22
SWC C2 C7 SING Y N 23
SWC C3 C4 SING Y N 24
SWC N18 C19 SING N N 25
SWC C21 C20 SING N N 26
SWC C7 C6 DOUB Y N 27
SWC C19 C20 SING N N 28
SWC C19 O22 DOUB N N 29
SWC C4 C5 DOUB Y N 30
SWC C6 C5 SING Y N 31
SWC C5 S8 SING N N 32
SWC O9 S8 SING N N 33
SWC S8 O10 SING N N 34
SWC C1 H1 SING N N 35
SWC C1 H2 SING N N 36
SWC C12 H3 SING N N 37
SWC C12 H4 SING N N 38
SWC C15 H5 SING N N 39
SWC C15 H6 SING N N 40
SWC C16 H7 SING N N 41
SWC C16 H8 SING N N 42
SWC C20 H9 SING N N 43
SWC C20 H10 SING N N 44
SWC C21 H11 SING N N 45
SWC C21 H12 SING N N 46
SWC C25 H13 SING N N 47
SWC C27 H14 SING N N 48
SWC C27 H15 SING N N 49
SWC C3 H16 SING N N 50
SWC C30 H17 SING N N 51
SWC C30 H18 SING N N 52
SWC C30 H19 SING N N 53
SWC C31 H20 SING N N 54
SWC C31 H21 SING N N 55
SWC C31 H22 SING N N 56
SWC C4 H23 SING N N 57
SWC C6 H24 SING N N 58
SWC C7 H25 SING N N 59
SWC N13 H26 SING N N 60
SWC N18 H27 SING N N 61
SWC N23 H28 SING N N 62
SWC O10 H29 SING N N 63
SWC O29 H30 SING N N 64
SWC O36 H32 SING N N 65
SWC O9 H33 SING N N 66
SWC S8 F1 SING N N 67
SWC P33 O1 SING N N 68
SWC O1 H35 SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
SWC SMILES ACDLabs 12.01 "OS(F)(O)c1ccc(CCNC(=O)CCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)O)cc1"
SWC InChI InChI 1.06 "InChI=1S/C20H33FN3O10PS/c1-20(2,13-34-35(29,30)31)18(27)19(28)24-12-9-17(26)23-11-8-16(25)22-10-7-14-3-5-15(6-4-14)36(21,32)33/h3-6,18,27,32-33H,7-13H2,1-2H3,(H,22,25)(H,23,26)(H,24,28)(H2,29,30,31)/t18-/m0/s1"
SWC InChIKey InChI 1.06 AWRGUSCDENOWAW-SFHVURJKSA-N
SWC SMILES_CANONICAL CACTVS 3.385 "CC(C)(CO[P](O)(O)=O)[C@@H](O)C(=O)NCCC(=O)NCCC(=O)NCCc1ccc(cc1)[S](O)(O)F"
SWC SMILES CACTVS 3.385 "CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCC(=O)NCCc1ccc(cc1)[S](O)(O)F"
SWC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCC(=O)NCCc1ccc(cc1)S(O)(O)F)O"
SWC SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)(COP(=O)(O)O)C(C(=O)NCCC(=O)NCCC(=O)NCCc1ccc(cc1)S(O)(O)F)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
SWC "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl-N-(2-{4-[fluoro(dihydroxy)-lambda~4~-sulfanyl]phenyl}ethyl)-beta-alaninamide"
SWC "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(3~{R})-4-[[3-[[3-[2-[4-[fluoranyl-bis(oxidanyl)-$l^{4}-sulfanyl]phenyl]ethylamino]-3-oxidanylidene-propyl]amino]-3-oxidanylidene-propyl]amino]-2,2-dimethyl-3-oxidanyl-4-oxidanylidene-butyl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
SWC "Create component" 2022-07-12 RCSB
SWC "Initial release" 2023-07-12 RCSB
SWC "Modify PCM" 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 SWC SER None Crosslinker "Amino-acid side chain" "Any position" P33 OG ? ?
2 SWC TYR None Crosslinker "Amino-acid side chain" "Any position" S8 OH ? ?
#