data_SXC # _chem_comp.id SXC _chem_comp.name "bromo(4-{3-[(R)-ethoxy(4-nitrophenoxy)phosphoryl]propyl}-2,6-bis[(methylsulfanyl-kappaS)methyl]phenyl-kappaC~1~)palladium(2+)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H27 Br N O5 P Pd S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "ethyl 4-nitrophenyl P-[3-(4-(bromopallado)-1,3-bis[(methylthio)methyl]-phenyl)propyl]phosphonate" _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2008-10-08 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 654.871 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SXC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ESC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SXC BR1 BR1 BR 0 0 N N N 39.643 -26.548 4.878 -6.547 -0.586 0.834 BR1 SXC 1 SXC PD1 PD1 PD 0 0 N N S 38.801 -24.697 6.218 -4.768 0.147 -0.312 PD1 SXC 2 SXC S1 S1 S 1 1 N N R 37.633 -23.694 4.516 -4.342 -0.856 -2.181 S1 SXC 3 SXC S2 S2 S 1 1 N N R 39.796 -25.304 8.153 -4.518 2.292 -0.441 S2 SXC 4 SXC P1 P1 P 0 1 N N R 32.451 -19.844 11.698 4.483 -0.360 0.928 P1 SXC 5 SXC O1 O1 O 0 1 N N N 32.841 -20.920 12.716 4.538 1.231 0.688 O1 SXC 6 SXC O2 O2 O 0 1 N N N 31.317 -20.244 10.804 4.349 -1.051 -0.374 O2 SXC 7 SXC C1 C1 C 0 1 Y N N 38.116 -23.156 7.338 -3.008 -0.163 0.416 C1 SXC 8 SXC C2 C2 C 0 1 Y N N 37.427 -22.098 6.750 -2.465 -1.247 -0.148 C2 SXC 9 SXC C3 C3 C 0 1 Y N N 36.877 -21.070 7.530 -1.215 -1.512 0.465 C3 SXC 10 SXC C4 C4 C 0 1 Y N N 36.923 -21.116 8.895 -0.716 -0.557 1.332 C4 SXC 11 SXC C5 C5 C 0 1 Y N N 37.614 -22.122 9.537 -1.286 0.678 1.585 C5 SXC 12 SXC C6 C6 C 0 1 Y N N 38.229 -23.107 8.746 -2.542 0.955 0.984 C6 SXC 13 SXC C7 C7 C 0 1 N N N 37.384 -22.044 5.222 -3.042 -1.914 -1.386 C7 SXC 14 SXC C9 C9 C 0 1 N N N 38.823 -23.456 3.180 -5.742 -1.995 -2.361 C9 SXC 15 SXC C10 C10 C 0 1 N N N 39.127 -24.114 9.404 -3.261 2.287 0.925 C10 SXC 16 SXC C12 C12 C 0 1 N N N 38.977 -26.799 8.582 -3.502 2.496 -1.930 C12 SXC 17 SXC C13 C13 C 0 1 N N N 36.173 -20.094 9.745 0.557 -0.890 2.065 C13 SXC 18 SXC C14 C14 C 0 1 N N N 34.811 -20.653 10.273 1.758 -0.428 1.237 C14 SXC 19 SXC C15 C15 C 0 1 N N N 33.976 -19.488 10.826 3.051 -0.766 1.981 C15 SXC 20 SXC C16 C16 C 0 1 N N N 31.959 -21.329 13.799 3.833 1.883 -0.370 C16 SXC 21 SXC C17 C17 C 0 1 N N N 32.418 -22.696 14.398 4.011 3.398 -0.244 C17 SXC 22 SXC O3 O3 O 0 1 N N N 32.107 -18.481 12.434 5.837 -0.840 1.654 O3 SXC 23 SXC H3 H3 H 0 1 N N N 36.409 -20.227 7.043 -0.673 -2.424 0.263 H3 SXC 24 SXC H5 H5 H 0 1 N N N 37.680 -22.152 10.615 -0.794 1.403 2.215 H5 SXC 25 SXC H17 H17 H 0 1 N N N 38.181 -21.376 4.863 -3.483 -2.870 -1.103 H17 SXC 26 SXC H27 H27 H 0 1 N N N 36.399 -21.669 4.908 -2.239 -2.091 -2.102 H27 SXC 27 SXC H19 H19 H 0 1 N N N 38.291 -23.408 2.219 -5.893 -2.536 -1.426 H19 SXC 28 SXC H29 H29 H 0 1 N N N 39.373 -22.517 3.342 -6.642 -1.430 -2.603 H29 SXC 29 SXC H39 H39 H 0 1 N N N 39.530 -24.298 3.165 -5.532 -2.705 -3.161 H39 SXC 30 SXC H110 H110 H 0 0 N N N 38.552 -24.670 10.159 -2.528 3.073 0.740 H110 SXC 31 SXC H210 H210 H 0 0 N N N 39.968 -23.585 9.877 -3.762 2.483 1.873 H210 SXC 32 SXC H112 H112 H 0 0 N N N 38.806 -27.397 7.675 -4.030 2.083 -2.789 H112 SXC 33 SXC H212 H212 H 0 0 N N N 39.601 -27.370 9.285 -3.310 3.556 -2.096 H212 SXC 34 SXC H312 H312 H 0 0 N N N 38.011 -26.565 9.054 -2.556 1.971 -1.799 H312 SXC 35 SXC H113 H113 H 0 0 N N N 36.801 -19.827 10.608 0.564 -0.383 3.030 H113 SXC 36 SXC H213 H213 H 0 0 N N N 35.959 -19.219 9.114 0.616 -1.967 2.220 H213 SXC 37 SXC H114 H114 H 0 0 N N N 34.267 -21.141 9.450 1.751 -0.935 0.272 H114 SXC 38 SXC H214 H214 H 0 0 N N N 34.994 -21.390 11.068 1.699 0.650 1.082 H214 SXC 39 SXC H115 H115 H 0 0 N N N 34.623 -18.954 11.538 3.066 -1.830 2.220 H115 SXC 40 SXC H215 H215 H 0 0 N N N 33.651 -18.941 9.929 3.102 -0.186 2.903 H215 SXC 41 SXC H116 H116 H 0 0 N N N 31.982 -20.564 14.589 4.228 1.550 -1.330 H116 SXC 42 SXC H216 H216 H 0 0 N N N 30.939 -21.440 13.402 2.773 1.636 -0.308 H216 SXC 43 SXC H117 H117 H 0 0 N N N 32.526 -23.434 13.589 3.473 3.895 -1.051 H117 SXC 44 SXC H217 H217 H 0 0 N N N 33.384 -22.567 14.908 3.615 3.731 0.716 H217 SXC 45 SXC H317 H317 H 0 0 N N N 31.667 -23.051 15.119 5.070 3.646 -0.306 H317 SXC 46 SXC C161 C161 C 0 0 Y N N 32.822 -17.243 12.434 6.961 -0.638 0.918 C161 SXC 47 SXC C171 C171 C 0 0 Y N N 32.822 -14.163 12.434 9.249 -0.227 -0.582 C171 SXC 48 SXC C18 C18 C 0 1 Y N N 31.488 -14.932 12.434 8.562 -1.423 -0.685 C18 SXC 49 SXC C19 C19 C 0 1 Y N N 31.488 -16.473 12.434 7.419 -1.630 0.063 C19 SXC 50 SXC C20 C20 C 0 1 Y N N 34.156 -16.473 12.434 7.649 0.563 1.014 C20 SXC 51 SXC C21 C21 C 0 1 Y N N 34.156 -14.932 12.434 8.791 0.765 0.264 C21 SXC 52 SXC N1 N1 N 1 1 N N N 32.822 -12.693 12.434 10.473 -0.008 -1.384 N1 SXC 53 SXC O4 O4 O -1 1 N N N 34.000 -12.012 12.434 10.875 -0.880 -2.134 O4 SXC 54 SXC O5 O5 O 0 1 N N N 31.809 -12.108 12.434 11.079 1.045 -1.295 O5 SXC 55 SXC H24 H24 H 0 1 N N N 30.553 -14.392 12.434 8.921 -2.197 -1.347 H24 SXC 56 SXC H25 H25 H 0 1 N N N 30.553 -17.013 12.434 6.883 -2.565 -0.017 H25 SXC 57 SXC H26 H26 H 0 1 N N N 35.091 -17.013 12.434 7.291 1.339 1.675 H26 SXC 58 SXC H271 H271 H 0 0 N N N 35.091 -14.392 12.434 9.329 1.698 0.343 H271 SXC 59 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SXC BR1 PD1 SING N N 1 SXC PD1 C1 SING N N 2 SXC PD1 S2 SING N N 3 SXC S1 C7 SING N N 4 SXC S1 PD1 SING N N 5 SXC S2 C12 SING N N 6 SXC S2 C10 SING N N 7 SXC O3 P1 SING N N 8 SXC P1 O1 SING N N 9 SXC O1 C16 SING N N 10 SXC O2 P1 DOUB N N 11 SXC C1 C6 DOUB Y N 12 SXC C2 C1 SING Y N 13 SXC C2 C3 DOUB Y N 14 SXC C3 C4 SING Y N 15 SXC C3 H3 SING N N 16 SXC C4 C5 DOUB Y N 17 SXC C4 C13 SING N N 18 SXC C5 H5 SING N N 19 SXC C6 C10 SING N N 20 SXC C6 C5 SING Y N 21 SXC C7 C2 SING N N 22 SXC C7 H17 SING N N 23 SXC C7 H27 SING N N 24 SXC C9 S1 SING N N 25 SXC C9 H19 SING N N 26 SXC C9 H29 SING N N 27 SXC C9 H39 SING N N 28 SXC C10 H110 SING N N 29 SXC C10 H210 SING N N 30 SXC C12 H112 SING N N 31 SXC C12 H212 SING N N 32 SXC C12 H312 SING N N 33 SXC C13 C14 SING N N 34 SXC C13 H113 SING N N 35 SXC C13 H213 SING N N 36 SXC C14 C15 SING N N 37 SXC C14 H114 SING N N 38 SXC C14 H214 SING N N 39 SXC C15 P1 SING N N 40 SXC C15 H115 SING N N 41 SXC C15 H215 SING N N 42 SXC C16 C17 SING N N 43 SXC C16 H116 SING N N 44 SXC C16 H216 SING N N 45 SXC C17 H117 SING N N 46 SXC C17 H217 SING N N 47 SXC C17 H317 SING N N 48 SXC O3 C161 SING N N 49 SXC C19 C161 DOUB Y N 50 SXC C161 C20 SING Y N 51 SXC C171 C18 DOUB Y N 52 SXC C18 C19 SING Y N 53 SXC C20 C21 DOUB Y N 54 SXC C171 C21 SING Y N 55 SXC C171 N1 SING N N 56 SXC N1 O4 SING N N 57 SXC N1 O5 DOUB N N 58 SXC C18 H24 SING N N 59 SXC C19 H25 SING N N 60 SXC C20 H26 SING N N 61 SXC C21 H271 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SXC SMILES ACDLabs 10.04 "[O-][N+](=O)c4ccc(OP(=O)(OCC)CCCc1cc2c3c(c1)C[S+](C)[Pd]3(Br)[S+](C2)C)cc4" SXC SMILES_CANONICAL CACTVS 3.341 "CCO[P@](=O)(CCCc1cc2C[S@@+](C)[Pd@@]3(Br)[S@+](C)Cc(c1)c23)Oc4ccc(cc4)[N+]([O-])=O" SXC SMILES CACTVS 3.341 "CCO[P](=O)(CCCc1cc2C[S+](C)[Pd]3(Br)[S+](C)Cc(c1)c23)Oc4ccc(cc4)[N+]([O-])=O" SXC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCO[P@](=O)(CCCc1cc2c3c(c1)C[S@+]([Pd]3([S@@+](C2)C)Br)C)Oc4ccc(cc4)[N+](=O)[O-]" SXC SMILES "OpenEye OEToolkits" 1.5.0 "CCOP(=O)(CCCc1cc2c3c(c1)C[S+]([Pd]3([S+](C2)C)Br)C)Oc4ccc(cc4)[N+](=O)[O-]" SXC InChI InChI 1.03 "InChI=1S/C21H27NO5PS2.BrH.Pd/c1-4-26-28(25,27-21-9-7-20(8-10-21)22(23)24)11-5-6-17-12-18(15-29-2)14-19(13-17)16-30-3;;/h7-10,12-13H,4-6,11,15-16H2,1-3H3;1H;/q;;+3/p-1/t28-;;/m1../s1" SXC InChIKey InChI 1.03 UQJAYMPWLMSAFV-QDSLRZTOSA-M # _pdbx_chem_comp_identifier.comp_id SXC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 10.04 _pdbx_chem_comp_identifier.identifier "bromo(4-{3-[(R)-ethoxy(4-nitrophenoxy)phosphoryl]propyl}-2,6-bis[(methylsulfanyl-kappaS)methyl]phenyl-kappaC~1~)palladium(2+)" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SXC "Create component" 2008-10-08 PDBJ SXC "Modify aromatic_flag" 2011-06-04 RCSB SXC "Modify descriptor" 2011-06-04 RCSB SXC "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id SXC _pdbx_chem_comp_synonyms.name "ethyl 4-nitrophenyl P-[3-(4-(bromopallado)-1,3-bis[(methylthio)methyl]-phenyl)propyl]phosphonate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##