data_SXZ # _chem_comp.id SXZ _chem_comp.name "(2S)-4-({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}sulfanyl)-2-[(3-methylbutanoyl)amino]butanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H28 N6 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-07-05 _chem_comp.pdbx_modified_date 2017-08-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.527 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SXZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5W8E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SXZ OXT O1 O 0 1 N N N -33.600 27.767 -10.750 -6.491 2.438 -1.389 OXT SXZ 1 SXZ C C1 C 0 1 N N N -32.866 26.794 -10.461 -5.426 2.641 -0.854 C SXZ 2 SXZ O O2 O 0 1 N N N -33.328 25.737 -9.975 -4.935 3.888 -0.789 O SXZ 3 SXZ CA C2 C 0 1 N N S -31.385 26.907 -10.705 -4.653 1.494 -0.256 CA SXZ 4 SXZ N N1 N 0 1 N N N -31.071 27.282 -12.085 -5.399 0.248 -0.451 N SXZ 5 SXZ CB C3 C 0 1 N N N -30.827 28.007 -9.788 -3.290 1.385 -0.942 CB SXZ 6 SXZ CG C4 C 0 1 N N N -29.358 28.366 -10.013 -2.457 0.303 -0.252 CG SXZ 7 SXZ SD S1 S 0 1 N N N -28.812 29.445 -8.719 -0.840 0.175 -1.065 SD SXZ 8 SXZ "C5'" C5 C 0 1 N N N -28.480 28.434 -7.306 -0.013 -1.136 -0.122 "C5'" SXZ 9 SXZ "C4'" C6 C 0 1 N N S -28.933 29.108 -6.018 1.387 -1.369 -0.693 "C4'" SXZ 10 SXZ "O4'" O3 O 0 1 N N N -30.353 29.289 -6.026 2.241 -0.240 -0.407 "O4'" SXZ 11 SXZ "C1'" C7 C 0 1 N N R -30.881 28.963 -4.740 3.590 -0.744 -0.525 "C1'" SXZ 12 SXZ "C2'" C8 C 0 1 N N R -29.964 27.863 -4.225 3.546 -2.145 0.126 "C2'" SXZ 13 SXZ "O2'" O4 O 0 1 N N N -29.932 27.816 -2.795 4.381 -3.056 -0.591 "O2'" SXZ 14 SXZ "C3'" C9 C 0 1 N N S -28.614 28.255 -4.795 2.064 -2.565 0.012 "C3'" SXZ 15 SXZ "O3'" O5 O 0 1 N N N -27.889 29.054 -3.851 1.938 -3.749 -0.779 "O3'" SXZ 16 SXZ N9 N2 N 0 1 Y N N -32.302 28.546 -4.848 4.523 0.124 0.197 N9 SXZ 17 SXZ C8 C10 C 0 1 Y N N -32.819 27.609 -5.666 4.216 0.955 1.233 C8 SXZ 18 SXZ N7 N3 N 0 1 Y N N -34.157 27.539 -5.465 5.285 1.578 1.636 N7 SXZ 19 SXZ C5 C11 C 0 1 Y N N -34.474 28.450 -4.518 6.344 1.188 0.886 C5 SXZ 20 SXZ C6 C12 C 0 1 Y N N -35.659 28.838 -3.904 7.711 1.513 0.861 C6 SXZ 21 SXZ N6 N4 N 0 1 N N N -36.836 28.260 -4.231 8.237 2.429 1.755 N6 SXZ 22 SXZ N1 N5 N 0 1 Y N N -35.634 29.816 -2.964 8.486 0.919 -0.040 N1 SXZ 23 SXZ C2 C13 C 0 1 Y N N -34.483 30.409 -2.612 7.993 0.044 -0.897 C2 SXZ 24 SXZ N3 N6 N 0 1 Y N N -33.329 30.053 -3.193 6.720 -0.291 -0.911 N3 SXZ 25 SXZ C4 C14 C 0 1 Y N N -33.300 29.080 -4.139 5.869 0.246 -0.043 C4 SXZ 26 SXZ C1 C15 C 0 1 N N N -30.837 26.390 -13.058 -6.357 -0.109 0.427 C1 SXZ 27 SXZ O2 O6 O 0 1 N N N -30.873 25.175 -12.892 -6.602 0.602 1.379 O2 SXZ 28 SXZ C3 C16 C 0 1 N N N -30.503 26.986 -14.415 -7.123 -1.390 0.226 C3 SXZ 29 SXZ C7 C17 C 0 1 N N N -30.612 26.012 -15.589 -8.143 -1.557 1.355 C7 SXZ 30 SXZ C9 C18 C 0 1 N N N -30.027 26.635 -16.853 -9.188 -0.442 1.266 C9 SXZ 31 SXZ C10 C19 C 0 1 N N N -32.056 25.595 -15.854 -8.834 -2.915 1.221 C10 SXZ 32 SXZ H1 H1 H 0 1 N N N -34.270 25.817 -9.879 -5.469 4.592 -1.183 H1 SXZ 33 SXZ H2 H2 H 0 1 N N N -30.899 25.952 -10.455 -4.511 1.669 0.810 H2 SXZ 34 SXZ H3 H3 H 0 1 N N N -31.029 28.255 -12.314 -5.203 -0.320 -1.213 H3 SXZ 35 SXZ H4 H4 H 0 1 N N N -31.426 28.916 -9.945 -3.430 1.123 -1.990 H4 SXZ 36 SXZ H5 H5 H 0 1 N N N -30.938 27.670 -8.747 -2.771 2.342 -0.873 H5 SXZ 37 SXZ H6 H6 H 0 1 N N N -28.751 27.449 -10.007 -2.316 0.566 0.797 H6 SXZ 38 SXZ H7 H7 H 0 1 N N N -29.248 28.872 -10.984 -2.975 -0.653 -0.320 H7 SXZ 39 SXZ H8 H8 H 0 1 N N N -29.014 27.479 -7.417 0.066 -0.837 0.923 H8 SXZ 40 SXZ H9 H9 H 0 1 N N N -27.398 28.244 -7.249 -0.592 -2.057 -0.194 H9 SXZ 41 SXZ H10 H10 H 0 1 N N N -28.424 30.078 -5.922 1.334 -1.543 -1.768 H10 SXZ 42 SXZ H11 H11 H 0 1 N N N -30.806 29.831 -4.069 3.876 -0.822 -1.574 H11 SXZ 43 SXZ H12 H12 H 0 1 N N N -30.277 26.895 -4.643 3.851 -2.090 1.171 H12 SXZ 44 SXZ H13 H13 H 0 1 N N N -30.788 27.569 -2.467 4.391 -3.951 -0.226 H13 SXZ 45 SXZ H14 H14 H 0 1 N N N -28.047 27.360 -5.090 1.633 -2.718 1.002 H14 SXZ 46 SXZ H15 H15 H 0 1 N N N -27.685 28.532 -3.084 2.346 -4.532 -0.383 H15 SXZ 47 SXZ H16 H16 H 0 1 N N N -32.258 27.010 -6.368 3.230 1.078 1.657 H16 SXZ 48 SXZ H17 H17 H 0 1 N N N -37.571 28.670 -3.690 7.661 2.855 2.409 H17 SXZ 49 SXZ H18 H18 H 0 1 N N N -37.018 28.403 -5.204 9.182 2.645 1.728 H18 SXZ 50 SXZ H19 H19 H 0 1 N N N -34.487 31.179 -1.855 8.659 -0.415 -1.613 H19 SXZ 51 SXZ H20 H20 H 0 1 N N N -29.470 27.363 -14.378 -7.643 -1.357 -0.731 H20 SXZ 52 SXZ H21 H21 H 0 1 N N N -31.192 27.823 -14.600 -6.432 -2.233 0.234 H21 SXZ 53 SXZ H22 H22 H 0 1 N N N -30.030 25.111 -15.346 -7.633 -1.502 2.316 H22 SXZ 54 SXZ H23 H23 H 0 1 N N N -28.986 26.937 -16.666 -9.914 -0.561 2.070 H23 SXZ 55 SXZ H24 H24 H 0 1 N N N -30.054 25.899 -17.670 -8.695 0.525 1.361 H24 SXZ 56 SXZ H25 H25 H 0 1 N N N -30.620 27.518 -17.135 -9.698 -0.498 0.305 H25 SXZ 57 SXZ H26 H26 H 0 1 N N N -32.481 25.145 -14.945 -8.090 -3.709 1.284 H26 SXZ 58 SXZ H27 H27 H 0 1 N N N -32.647 26.479 -16.136 -9.561 -3.034 2.025 H27 SXZ 59 SXZ H28 H28 H 0 1 N N N -32.081 24.860 -16.672 -9.344 -2.971 0.259 H28 SXZ 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SXZ C9 C7 SING N N 1 SXZ C10 C7 SING N N 2 SXZ C7 C3 SING N N 3 SXZ C3 C1 SING N N 4 SXZ C1 O2 DOUB N N 5 SXZ C1 N SING N N 6 SXZ N CA SING N N 7 SXZ OXT C DOUB N N 8 SXZ CA C SING N N 9 SXZ CA CB SING N N 10 SXZ C O SING N N 11 SXZ CG CB SING N N 12 SXZ CG SD SING N N 13 SXZ SD "C5'" SING N N 14 SXZ "C5'" "C4'" SING N N 15 SXZ "O4'" "C4'" SING N N 16 SXZ "O4'" "C1'" SING N N 17 SXZ "C4'" "C3'" SING N N 18 SXZ C8 N7 DOUB Y N 19 SXZ C8 N9 SING Y N 20 SXZ N7 C5 SING Y N 21 SXZ N9 "C1'" SING N N 22 SXZ N9 C4 SING Y N 23 SXZ "C3'" "C2'" SING N N 24 SXZ "C3'" "O3'" SING N N 25 SXZ "C1'" "C2'" SING N N 26 SXZ C5 C4 DOUB Y N 27 SXZ C5 C6 SING Y N 28 SXZ N6 C6 SING N N 29 SXZ "C2'" "O2'" SING N N 30 SXZ C4 N3 SING Y N 31 SXZ C6 N1 DOUB Y N 32 SXZ N3 C2 DOUB Y N 33 SXZ N1 C2 SING Y N 34 SXZ O H1 SING N N 35 SXZ CA H2 SING N N 36 SXZ N H3 SING N N 37 SXZ CB H4 SING N N 38 SXZ CB H5 SING N N 39 SXZ CG H6 SING N N 40 SXZ CG H7 SING N N 41 SXZ "C5'" H8 SING N N 42 SXZ "C5'" H9 SING N N 43 SXZ "C4'" H10 SING N N 44 SXZ "C1'" H11 SING N N 45 SXZ "C2'" H12 SING N N 46 SXZ "O2'" H13 SING N N 47 SXZ "C3'" H14 SING N N 48 SXZ "O3'" H15 SING N N 49 SXZ C8 H16 SING N N 50 SXZ N6 H17 SING N N 51 SXZ N6 H18 SING N N 52 SXZ C2 H19 SING N N 53 SXZ C3 H20 SING N N 54 SXZ C3 H21 SING N N 55 SXZ C7 H22 SING N N 56 SXZ C9 H23 SING N N 57 SXZ C9 H24 SING N N 58 SXZ C9 H25 SING N N 59 SXZ C10 H26 SING N N 60 SXZ C10 H27 SING N N 61 SXZ C10 H28 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SXZ SMILES ACDLabs 12.01 "O=C(O)C(CCSCC1C(C(C(O1)n2c3c(nc2)c(ncn3)N)O)O)NC(=O)CC(C)C" SXZ InChI InChI 1.03 "InChI=1S/C19H28N6O6S/c1-9(2)5-12(26)24-10(19(29)30)3-4-32-6-11-14(27)15(28)18(31-11)25-8-23-13-16(20)21-7-22-17(13)25/h7-11,14-15,18,27-28H,3-6H2,1-2H3,(H,24,26)(H,29,30)(H2,20,21,22)/t10-,11+,14+,15+,18+/m0/s1" SXZ InChIKey InChI 1.03 DHVHVJZUMVOUEH-MBRXSIFGSA-N SXZ SMILES_CANONICAL CACTVS 3.385 "CC(C)CC(=O)N[C@@H](CCSC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23)C(O)=O" SXZ SMILES CACTVS 3.385 "CC(C)CC(=O)N[CH](CCSC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23)C(O)=O" SXZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)CC(=O)N[C@@H](CCSC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O)C(=O)O" SXZ SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)CC(=O)NC(CCSCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SXZ "SYSTEMATIC NAME" ACDLabs 12.01 "(2S)-4-({[(2S,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl}sulfanyl)-2-[(3-methylbutanoyl)amino]butanoic acid (non-preferred name)" SXZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(2~{S})-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]-2-(3-methylbutanoylamino)butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SXZ "Create component" 2017-07-05 RCSB SXZ "Initial release" 2017-08-23 RCSB #