data_SY8 # _chem_comp.id SY8 _chem_comp.name 5-azanylpentan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H11 N O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 101.147 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SY8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7B5L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SY8 N N1 N 0 1 N N N N N N 196.755 128.048 135.628 -3.291 0.320 -0.031 N SY8 1 SY8 C C1 C 0 1 N N N N N N 198.555 124.133 135.963 2.964 -0.630 0.019 C SY8 2 SY8 O O1 O 0 1 N N N N N N 199.106 125.828 137.528 1.586 1.281 -0.020 O SY8 3 SY8 C1 C2 C 0 1 N N N N N N 198.974 125.518 136.357 1.631 0.074 0.000 C1 SY8 4 SY8 C2 C3 C 0 1 N N N N N N 199.260 126.556 135.296 0.355 -0.728 0.006 C2 SY8 5 SY8 C3 C4 C 0 1 N N N N N N 198.169 126.617 134.229 -0.844 0.222 -0.016 C3 SY8 6 SY8 C4 C5 C 0 1 N N N N N N 196.770 126.840 134.796 -2.139 -0.592 -0.010 C4 SY8 7 SY8 H1 H1 H 0 1 N N N N N N 195.836 128.188 135.996 -4.159 -0.193 -0.028 H1 SY8 8 SY8 H2 H2 H 0 1 N N N N N N 197.403 127.941 136.382 -3.252 0.970 0.740 H2 SY8 9 SY8 H4 H4 H 0 1 N N N N N N 198.408 123.523 136.866 3.279 -0.784 1.051 H4 SY8 10 SY8 H5 H5 H 0 1 N N N N N N 197.613 124.182 135.397 2.872 -1.595 -0.480 H5 SY8 11 SY8 H6 H6 H 0 1 N N N N N N 199.336 123.678 135.336 3.704 -0.022 -0.501 H6 SY8 12 SY8 H7 H7 H 0 1 N N N N N N 200.216 126.310 134.810 0.326 -1.370 -0.874 H7 SY8 13 SY8 H8 H8 H 0 1 N N N N N N 199.337 127.542 135.778 0.316 -1.342 0.906 H8 SY8 14 SY8 H9 H9 H 0 1 N N N N N N 198.172 125.667 133.674 -0.814 0.865 0.864 H9 SY8 15 SY8 H10 H10 H 0 1 N N N N N N 198.401 127.444 133.541 -0.805 0.836 -0.916 H10 SY8 16 SY8 H11 H11 H 0 1 N N N N N N 196.056 126.959 133.968 -2.179 -1.206 0.890 H11 SY8 17 SY8 H12 H12 H 0 1 N N N N N N 196.482 125.972 135.408 -2.169 -1.234 -0.890 H12 SY8 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SY8 C3 C4 SING N N 1 SY8 C3 C2 SING N N 2 SY8 C4 N SING N N 3 SY8 C2 C1 SING N N 4 SY8 C C1 SING N N 5 SY8 C1 O DOUB N N 6 SY8 N H1 SING N N 7 SY8 N H2 SING N N 8 SY8 C H4 SING N N 9 SY8 C H5 SING N N 10 SY8 C H6 SING N N 11 SY8 C2 H7 SING N N 12 SY8 C2 H8 SING N N 13 SY8 C3 H9 SING N N 14 SY8 C3 H10 SING N N 15 SY8 C4 H11 SING N N 16 SY8 C4 H12 SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SY8 InChI InChI 1.03 "InChI=1S/C5H11NO/c1-5(7)3-2-4-6/h2-4,6H2,1H3" SY8 InChIKey InChI 1.03 VTHKLCWOLNQWHB-UHFFFAOYSA-N SY8 SMILES_CANONICAL CACTVS 3.385 "CC(=O)CCCN" SY8 SMILES CACTVS 3.385 "CC(=O)CCCN" SY8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)CCCN" SY8 SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)CCCN" # _pdbx_chem_comp_identifier.comp_id SY8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier 5-azanylpentan-2-one # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SY8 "Create component" 2020-12-04 PDBE SY8 "Initial release" 2021-02-10 RCSB SY8 "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 SY8 GLY None Crosslinker "Amino-acid backbone" C-terminal N C ? ? 2 SY8 CYS None Crosslinker "Amino-acid side chain" "Any position" C SG ? ? 3 SY8 CYS None Crosslinker "Amino-acid side chain" "Any position" C3 SG ? ? #