data_SYD # _chem_comp.id SYD _chem_comp.name "[(5-phenylpyridin-2-yl)methyl]phosphonic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H12 N O3 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-09-14 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 249.202 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SYD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ANM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SYD C1 C1 C 0 1 Y N N 18.004 5.372 12.372 4.956 -1.227 0.402 C1 SYD 1 SYD C2 C2 C 0 1 Y N N 17.949 6.396 13.332 3.606 -1.210 0.113 C2 SYD 2 SYD C3 C3 C 0 1 Y N N 16.702 6.858 13.803 2.944 0.006 -0.039 C3 SYD 3 SYD C4 C4 C 0 1 Y N N 15.469 6.337 13.333 3.649 1.200 0.101 C4 SYD 4 SYD C5 C5 C 0 1 Y N N 15.525 5.324 12.352 4.999 1.171 0.389 C5 SYD 5 SYD C6 C6 C 0 1 Y N N 16.765 4.870 11.877 5.651 -0.039 0.539 C6 SYD 6 SYD C12 C12 C 0 1 Y N N 16.682 7.861 14.765 1.493 0.031 -0.349 C12 SYD 7 SYD C13 C13 C 0 1 Y N N 17.586 8.918 14.765 0.780 -1.157 -0.491 C13 SYD 8 SYD N14 N14 N 0 1 Y N N 17.551 9.783 15.787 -0.508 -1.137 -0.766 N14 SYD 9 SYD C15 C15 C 0 1 Y N N 16.579 9.729 16.735 -1.170 -0.006 -0.917 C15 SYD 10 SYD C16 C16 C 0 1 Y N N 15.675 8.678 16.768 -0.533 1.215 -0.791 C16 SYD 11 SYD C17 C17 C 0 1 Y N N 15.702 7.764 15.746 0.819 1.246 -0.498 C17 SYD 12 SYD C21 C21 C 0 1 N N N 16.480 10.783 17.843 -2.644 -0.045 -1.232 C21 SYD 13 SYD P22 P22 P 0 1 N N N 15.392 12.189 17.409 -3.597 -0.047 0.322 P22 SYD 14 SYD O25 O25 O 0 1 N N N 15.447 13.326 18.441 -3.146 -1.168 1.176 O25 SYD 15 SYD O26 O26 O 0 1 N N N 13.965 11.611 17.360 -3.363 1.345 1.097 O26 SYD 16 SYD O27 O27 O 0 1 N N N 15.586 12.602 15.922 -5.163 -0.221 -0.009 O27 SYD 17 SYD H1 H1 H 0 1 N N N 18.948 4.980 12.023 5.469 -2.170 0.524 H1 SYD 18 SYD H2 H2 H 0 1 N N N 18.863 6.830 13.710 3.065 -2.138 0.006 H2 SYD 19 SYD H4 H4 H 0 1 N N N 14.525 6.701 13.711 3.141 2.145 -0.016 H4 SYD 20 SYD H5 H5 H 0 1 N N N 14.611 4.897 11.966 5.547 2.096 0.498 H5 SYD 21 SYD H6 H6 H 0 1 N N N 16.781 4.112 11.108 6.707 -0.057 0.765 H6 SYD 22 SYD H13 H13 H 0 1 N N N 18.298 9.038 13.962 1.287 -2.104 -0.375 H13 SYD 23 SYD H16 H16 H 0 1 N N N 14.967 8.582 17.578 -1.085 2.134 -0.918 H16 SYD 24 SYD H17 H17 H 0 1 N N N 14.967 6.974 15.704 1.341 2.185 -0.390 H17 SYD 25 SYD H21 H21 H 0 1 N N N 16.073 10.299 18.743 -2.912 0.831 -1.822 H21 SYD 26 SYD H21A H21A H 0 0 N N N 17.489 11.176 18.035 -2.870 -0.948 -1.798 H21A SYD 27 SYD HO26 HO26 H 0 0 N N N 13.413 12.076 17.978 -3.637 2.125 0.595 HO26 SYD 28 SYD HO27 HO27 H 0 0 N N N 15.716 13.542 15.868 -5.732 -0.231 0.773 HO27 SYD 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SYD C1 C2 DOUB Y N 1 SYD C1 C6 SING Y N 2 SYD C2 C3 SING Y N 3 SYD C3 C4 DOUB Y N 4 SYD C3 C12 SING Y N 5 SYD C4 C5 SING Y N 6 SYD C5 C6 DOUB Y N 7 SYD C12 C13 DOUB Y N 8 SYD C12 C17 SING Y N 9 SYD C13 N14 SING Y N 10 SYD N14 C15 DOUB Y N 11 SYD C15 C16 SING Y N 12 SYD C15 C21 SING N N 13 SYD C16 C17 DOUB Y N 14 SYD C21 P22 SING N N 15 SYD P22 O25 DOUB N N 16 SYD P22 O26 SING N N 17 SYD P22 O27 SING N N 18 SYD C1 H1 SING N N 19 SYD C2 H2 SING N N 20 SYD C4 H4 SING N N 21 SYD C5 H5 SING N N 22 SYD C6 H6 SING N N 23 SYD C13 H13 SING N N 24 SYD C16 H16 SING N N 25 SYD C17 H17 SING N N 26 SYD C21 H21 SING N N 27 SYD C21 H21A SING N N 28 SYD O26 HO26 SING N N 29 SYD O27 HO27 SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SYD SMILES ACDLabs 12.01 "O=P(O)(O)Cc1ncc(cc1)c2ccccc2" SYD SMILES_CANONICAL CACTVS 3.370 "O[P](O)(=O)Cc1ccc(cn1)c2ccccc2" SYD SMILES CACTVS 3.370 "O[P](O)(=O)Cc1ccc(cn1)c2ccccc2" SYD SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)c2ccc(nc2)CP(=O)(O)O" SYD SMILES "OpenEye OEToolkits" 1.7.0 "c1ccc(cc1)c2ccc(nc2)CP(=O)(O)O" SYD InChI InChI 1.03 "InChI=1S/C12H12NO3P/c14-17(15,16)9-12-7-6-11(8-13-12)10-4-2-1-3-5-10/h1-8H,9H2,(H2,14,15,16)" SYD InChIKey InChI 1.03 JTYLHYFDHHMHKD-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SYD "SYSTEMATIC NAME" ACDLabs 12.01 "[(5-phenylpyridin-2-yl)methyl]phosphonic acid" SYD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(5-phenylpyridin-2-yl)methylphosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SYD "Create component" 2010-09-14 PDBJ SYD "Modify aromatic_flag" 2011-06-04 RCSB SYD "Modify descriptor" 2011-06-04 RCSB #