data_SZF # _chem_comp.id SZF _chem_comp.name 1-methoxy-N-methyl-L-tryptophan _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C13 H16 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-13 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 248.278 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SZF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8DNX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SZF CA C26 C 0 1 N N S Y N N 125.876 118.421 113.804 -2.184 -0.258 -0.177 C26 SZF 1 SZF C25 C25 C 0 1 N N N N N N 124.794 118.592 111.479 -2.399 1.125 -2.152 C25 SZF 2 SZF C27 C27 C 0 1 N N N N N N 124.733 119.062 114.572 -1.290 -0.439 1.052 C27 SZF 3 SZF C28 C28 C 0 1 Y N N N N N 124.994 120.604 114.660 0.155 -0.442 0.625 C28 SZF 4 SZF C29 C29 C 0 1 Y N N N N N 126.193 121.214 115.046 0.894 -1.519 0.315 C29 SZF 5 SZF C32 C32 C 0 1 N N N N N N 126.920 123.961 116.650 2.830 -3.391 -0.410 C32 SZF 6 SZF C33 C33 C 0 1 Y N N N N N 124.714 122.832 114.571 2.272 0.236 0.055 C33 SZF 7 SZF C34 C34 C 0 1 Y N N N N N 123.925 124.180 114.314 3.313 1.129 -0.177 C34 SZF 8 SZF C35 C35 C 0 1 Y N N N N N 122.484 124.137 113.850 3.107 2.480 -0.005 C35 SZF 9 SZF C36 C36 C 0 1 Y N N N N N 121.815 122.820 113.631 1.870 2.962 0.400 C36 SZF 10 SZF C37 C37 C 0 1 Y N N N N N 122.582 121.540 113.879 0.832 2.103 0.630 C37 SZF 11 SZF C38 C38 C 0 1 Y N N N N N 124.085 121.598 114.365 1.019 0.730 0.465 C38 SZF 12 SZF C C39 C 0 1 N N N Y N Y 125.771 116.882 113.855 -3.628 -0.400 0.227 C39 SZF 13 SZF N N24 N 0 1 N N N Y Y N 125.891 118.916 112.412 -1.965 1.077 -0.750 N24 SZF 14 SZF N30 N30 N 0 1 Y N N N N N 126.009 122.585 114.998 2.161 -1.134 -0.026 N30 SZF 15 SZF O31 O31 O 0 1 N N N N N N 126.988 123.563 115.298 3.205 -2.012 -0.406 O31 SZF 16 SZF O O63 O 0 1 N N N Y N Y 125.123 116.350 114.689 -4.280 0.581 0.496 O63 SZF 17 SZF HA H261 H 0 0 N N N Y N N 126.819 118.710 114.290 -1.938 -1.017 -0.920 H261 SZF 18 SZF H253 H253 H 0 0 N N N N N N 124.996 119.053 110.501 -3.439 0.805 -2.222 H253 SZF 19 SZF H252 H252 H 0 0 N N N N N N 124.723 117.501 111.362 -2.308 2.145 -2.526 H252 SZF 20 SZF H251 H251 H 0 0 N N N N N N 123.846 118.981 111.879 -1.774 0.462 -2.750 H251 SZF 21 SZF H271 H271 H 0 0 N N N N N N 123.784 118.876 114.048 -1.461 0.381 1.749 H271 SZF 22 SZF H272 H272 H 0 0 N N N N N N 124.682 118.636 115.585 -1.528 -1.385 1.538 H272 SZF 23 SZF H291 H291 H 0 0 N N N N N N 127.102 120.705 115.331 0.540 -2.540 0.333 H291 SZF 24 SZF H323 H323 H 0 0 N N N N N N 127.692 124.719 116.849 2.010 -3.543 -1.111 H323 SZF 25 SZF H321 H321 H 0 0 N N N N N N 125.927 124.386 116.858 3.684 -3.999 -0.711 H321 SZF 26 SZF H322 H322 H 0 0 N N N N N N 127.088 123.088 117.298 2.512 -3.684 0.591 H322 SZF 27 SZF H341 H341 H 0 0 N N N N N N 124.414 125.130 114.470 4.279 0.764 -0.491 H341 SZF 28 SZF H351 H351 H 0 0 N N N N N N 121.942 125.055 113.678 3.917 3.172 -0.185 H351 SZF 29 SZF H361 H361 H 0 0 N N N N N N 120.789 122.782 113.297 1.725 4.024 0.530 H361 SZF 30 SZF H371 H371 H 0 0 N N N N N N 122.102 120.585 113.724 -0.128 2.485 0.945 H371 SZF 31 SZF H H2 H 0 1 N Y N Y Y N 126.731 118.568 111.995 -0.999 1.354 -0.661 H2 SZF 32 SZF OXT OXT O 0 1 N Y N Y N Y 126.527 116.081 112.838 -4.192 -1.617 0.288 OXT SZF 33 SZF HXT HXT H 0 1 N Y N Y N Y 126.386 115.155 112.995 -5.121 -1.658 0.552 HXT SZF 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SZF C25 N SING N N 1 SZF N CA SING N N 2 SZF C36 C35 DOUB Y N 3 SZF C36 C37 SING Y N 4 SZF CA C SING N N 5 SZF CA C27 SING N N 6 SZF C35 C34 SING Y N 7 SZF C O DOUB N N 8 SZF C37 C38 DOUB Y N 9 SZF C34 C33 DOUB Y N 10 SZF C38 C33 SING Y N 11 SZF C38 C28 SING Y N 12 SZF C33 N30 SING Y N 13 SZF C27 C28 SING N N 14 SZF C28 C29 DOUB Y N 15 SZF N30 C29 SING Y N 16 SZF N30 O31 SING N N 17 SZF O31 C32 SING N N 18 SZF CA HA SING N N 19 SZF C25 H253 SING N N 20 SZF C25 H252 SING N N 21 SZF C25 H251 SING N N 22 SZF C27 H271 SING N N 23 SZF C27 H272 SING N N 24 SZF C29 H291 SING N N 25 SZF C32 H323 SING N N 26 SZF C32 H321 SING N N 27 SZF C32 H322 SING N N 28 SZF C34 H341 SING N N 29 SZF C35 H351 SING N N 30 SZF C36 H361 SING N N 31 SZF C37 H371 SING N N 32 SZF N H SING N N 33 SZF C OXT SING N N 34 SZF OXT HXT SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SZF SMILES ACDLabs 12.01 "O=C(O)C(NC)Cc1cn(OC)c2ccccc21" SZF InChI InChI 1.06 "InChI=1S/C13H16N2O3/c1-14-11(13(16)17)7-9-8-15(18-2)12-6-4-3-5-10(9)12/h3-6,8,11,14H,7H2,1-2H3,(H,16,17)/t11-/m0/s1" SZF InChIKey InChI 1.06 WVNHXKXDYLJPPY-NSHDSACASA-N SZF SMILES_CANONICAL CACTVS 3.385 "CN[C@@H](Cc1cn(OC)c2ccccc12)C(O)=O" SZF SMILES CACTVS 3.385 "CN[CH](Cc1cn(OC)c2ccccc12)C(O)=O" SZF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN[C@@H](Cc1cn(c2c1cccc2)OC)C(=O)O" SZF SMILES "OpenEye OEToolkits" 2.0.7 "CNC(Cc1cn(c2c1cccc2)OC)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier SZF "SYSTEMATIC NAME" ACDLabs 12.01 1-methoxy-N-methyl-L-tryptophan SZF "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-3-(1-methoxyindol-3-yl)-2-(methylamino)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SZF "Create component" 2022-07-13 RCSB SZF "Initial release" 2023-05-24 RCSB SZF "Modify backbone" 2023-11-03 PDBE SZF "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 SZF TRP Methoxylation "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? 2 SZF TRP Methylation "Named protein modification" "Amino-acid backbone" "Any position" ? ? ? ? #