data_SZI # _chem_comp.id SZI _chem_comp.name "[1-[[2,4-bis(trifluoromethyl)phenyl]methyl]benzimidazol-2-yl]sulfanylmethyl-$l^{3}-oxidanyl-bis(oxidanyl)boron" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H14 B F6 N2 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-20 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 451.171 _chem_comp.one_letter_code ? _chem_comp.three_letter_code SZI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8C0P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal SZI O2 O1 O 0 1 N N N N N N 18.833 -1.883 -2.963 3.242 2.026 -0.562 O2 SZI 1 SZI C10 C1 C 0 1 Y N N N N N 16.449 -3.585 -6.627 2.236 -0.322 0.658 C10 SZI 2 SZI C11 C2 C 0 1 Y N N N N N 20.676 -6.864 -6.089 -3.248 -0.005 0.156 C11 SZI 3 SZI C12 C3 C 0 1 Y N N N N N 19.768 -7.755 -5.537 -2.928 0.809 -0.914 C12 SZI 4 SZI O1 O2 O 0 1 N N N N N N 17.565 0.169 -4.060 2.301 3.614 0.693 O1 SZI 5 SZI C01 C4 C 0 1 Y N N N N N 14.795 -4.282 -7.926 3.204 -1.368 -0.994 C01 SZI 6 SZI N01 N1 N 0 1 Y N N N N N 15.027 -3.519 -6.619 3.305 -0.349 -0.101 N01 SZI 7 SZI S01 S1 S 0 1 N N N N N N 17.519 -2.858 -5.361 1.942 0.836 1.952 S01 SZI 8 SZI C02 C5 C 0 1 Y N N N N N 13.614 -4.618 -8.546 4.039 -1.838 -2.011 C02 SZI 9 SZI N02 N2 N 0 1 Y N N N N N 16.898 -4.248 -7.662 1.381 -1.323 0.290 N02 SZI 10 SZI C03 C6 C 0 1 Y N N N N N 13.665 -5.333 -9.740 3.651 -2.921 -2.768 C03 SZI 11 SZI C04 C7 C 0 1 Y N N N N N 14.895 -5.711 -10.287 2.438 -3.549 -2.529 C04 SZI 12 SZI C05 C8 C 0 1 Y N N N N N 16.073 -5.368 -9.624 1.598 -3.090 -1.536 C05 SZI 13 SZI C06 C9 C 0 1 Y N N N N N 16.008 -4.655 -8.440 1.973 -2.002 -0.762 C06 SZI 14 SZI C07 C10 C 0 1 N N N N N N 18.326 -4.458 -7.923 0.082 -1.622 0.897 C07 SZI 15 SZI C08 C11 C 0 1 Y N N N N N 18.868 -5.617 -7.077 -0.980 -0.765 0.258 C08 SZI 16 SZI C09 C12 C 0 1 Y N N N N N 20.241 -5.792 -6.868 -2.274 -0.791 0.743 C09 SZI 17 SZI C13 C13 C 0 1 Y N N N N N 18.417 -7.583 -5.762 -1.635 0.831 -1.403 C13 SZI 18 SZI C14 C14 C 0 1 Y N N N N N 17.969 -6.522 -6.526 -0.662 0.041 -0.820 C14 SZI 19 SZI C15 C15 C 0 1 N N N N N N 21.277 -4.816 -7.448 -2.623 -1.678 1.910 C15 SZI 20 SZI C16 C16 C 0 1 N N N N N N 20.275 -8.932 -4.700 -3.988 1.672 -1.548 C16 SZI 21 SZI C17 C17 C 0 1 N N N N N N 16.330 -2.189 -4.170 3.457 1.821 1.843 C17 SZI 22 SZI B B1 B 0 1 N N N N N N 17.317 -1.254 -3.248 3.378 2.781 0.569 B SZI 23 SZI F01 F1 F 0 1 N N N N N N 21.019 -4.552 -8.767 -2.267 -2.999 1.615 F01 SZI 24 SZI F02 F2 F 0 1 N N N N N N 21.255 -3.638 -6.730 -1.927 -1.250 3.046 F02 SZI 25 SZI F03 F3 F 0 1 N N N N N N 22.540 -5.381 -7.357 -3.999 -1.609 2.153 F03 SZI 26 SZI F17 F4 F 0 1 N N N N N N 21.192 -8.477 -3.802 -5.235 1.051 -1.417 F17 SZI 27 SZI F18 F5 F 0 1 N N N N N N 19.243 -9.533 -4.007 -4.019 2.917 -0.912 F18 SZI 28 SZI F19 F6 F 0 1 N N N N N N 20.860 -9.844 -5.532 -3.695 1.848 -2.905 F19 SZI 29 SZI H1 H1 H 0 1 N N N N N N 19.331 -1.279 -2.425 2.449 1.472 -0.573 H1 SZI 30 SZI H2 H2 H 0 1 N N N N N N 21.733 -7.002 -5.914 -4.259 -0.022 0.538 H2 SZI 31 SZI H3 H3 H 0 1 N N N N N N 18.134 0.731 -3.548 2.190 4.227 -0.046 H3 SZI 32 SZI H4 H4 H 0 1 N N N N N N 12.666 -4.333 -8.115 4.985 -1.353 -2.203 H4 SZI 33 SZI H5 H5 H 0 1 N N N N N N 12.749 -5.597 -10.247 4.297 -3.284 -3.554 H5 SZI 34 SZI H6 H6 H 0 1 N N N N N N 14.932 -6.263 -11.214 2.146 -4.397 -3.131 H6 SZI 35 SZI H7 H7 H 0 1 N N N N N N 17.030 -5.657 -10.032 0.654 -3.583 -1.355 H7 SZI 36 SZI H8 H8 H 0 1 N N N N N N 18.468 -4.692 -8.988 -0.158 -2.674 0.742 H8 SZI 37 SZI H9 H9 H 0 1 N N N N N N 18.878 -3.540 -7.673 0.123 -1.413 1.966 H9 SZI 38 SZI H10 H10 H 0 1 N N N N N N 17.708 -8.280 -5.340 -1.385 1.467 -2.239 H10 SZI 39 SZI H11 H11 H 0 1 N N N N N N 16.910 -6.395 -6.696 0.349 0.062 -1.199 H11 SZI 40 SZI H12 H12 H 0 1 N N N N N N 15.552 -1.590 -4.666 3.566 2.422 2.745 H12 SZI 41 SZI H13 H13 H 0 1 N N N N N N 15.857 -2.986 -3.578 4.316 1.157 1.744 H13 SZI 42 SZI O3 O3 O 0 1 N Y N N N N 16.548 -0.909 -1.825 4.522 3.524 0.487 O3 SZI 43 SZI H15 H15 H 0 1 N N N N N N 17.111 -0.368 -1.284 4.682 4.086 1.258 H15 SZI 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal SZI C04 C03 DOUB Y N 1 SZI C04 C05 SING Y N 2 SZI C03 C02 SING Y N 3 SZI C05 C06 DOUB Y N 4 SZI F01 C15 SING N N 5 SZI C02 C01 DOUB Y N 6 SZI C06 C01 SING Y N 7 SZI C06 N02 SING Y N 8 SZI C01 N01 SING Y N 9 SZI C07 N02 SING N N 10 SZI C07 C08 SING N N 11 SZI N02 C10 SING Y N 12 SZI C15 F03 SING N N 13 SZI C15 C09 SING N N 14 SZI C15 F02 SING N N 15 SZI C08 C09 DOUB Y N 16 SZI C08 C14 SING Y N 17 SZI C09 C11 SING Y N 18 SZI C10 N01 DOUB Y N 19 SZI C10 S01 SING N N 20 SZI C14 C13 DOUB Y N 21 SZI C11 C12 DOUB Y N 22 SZI C13 C12 SING Y N 23 SZI C12 C16 SING N N 24 SZI F19 C16 SING N N 25 SZI S01 C17 SING N N 26 SZI C16 F18 SING N N 27 SZI C16 F17 SING N N 28 SZI C17 B SING N N 29 SZI O1 B SING N N 30 SZI B O2 SING N N 31 SZI O2 H1 SING N N 32 SZI C11 H2 SING N N 33 SZI O1 H3 SING N N 34 SZI C02 H4 SING N N 35 SZI C03 H5 SING N N 36 SZI C04 H6 SING N N 37 SZI C05 H7 SING N N 38 SZI C07 H8 SING N N 39 SZI C07 H9 SING N N 40 SZI C13 H10 SING N N 41 SZI C14 H11 SING N N 42 SZI C17 H12 SING N N 43 SZI C17 H13 SING N N 44 SZI B O3 SING N N 45 SZI O3 H15 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor SZI InChI InChI 1.06 "InChI=1S/C17H14BF6N2O3S/c19-16(20,21)11-6-5-10(12(7-11)17(22,23)24)8-26-14-4-2-1-3-13(14)25-15(26)30-9-18(27,28)29/h1-7,27-29H,8-9H2" SZI InChIKey InChI 1.06 KHOQXIARLAATHE-UHFFFAOYSA-N SZI SMILES_CANONICAL CACTVS 3.385 "O[B](O)(O)CSc1nc2ccccc2n1Cc3ccc(cc3C(F)(F)F)C(F)(F)F" SZI SMILES CACTVS 3.385 "O[B](O)(O)CSc1nc2ccccc2n1Cc3ccc(cc3C(F)(F)F)C(F)(F)F" SZI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "B(CSc1nc2ccccc2n1Cc3ccc(cc3C(F)(F)F)C(F)(F)F)(O)(O)O" SZI SMILES "OpenEye OEToolkits" 2.0.7 "B(CSc1nc2ccccc2n1Cc3ccc(cc3C(F)(F)F)C(F)(F)F)(O)(O)O" # _pdbx_chem_comp_identifier.comp_id SZI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[1-[[2,4-bis(trifluoromethyl)phenyl]methyl]benzimidazol-2-yl]sulfanylmethyl-tris(oxidanyl)boron" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site SZI "Create component" 2022-12-20 PDBE SZI "Initial release" 2024-07-10 RCSB SZI "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id SZI _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom B _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #