data_T09 # _chem_comp.id T09 _chem_comp.name "(2S,4R)-2-amino-4-methyloctanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H19 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-13 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 173.253 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T09 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8DNX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T09 C01 C01 C 0 1 N N N N N N 132.729 110.582 112.758 5.543 0.211 0.093 C01 T09 1 T09 C02 C02 C 0 1 N N N N N N 132.714 110.537 111.208 4.240 -0.172 0.797 C02 T09 2 T09 C03 C03 C 0 1 N N N N N N 131.806 111.683 110.684 3.055 0.139 -0.120 C03 T09 3 T09 C04 C04 C 0 1 N N N N N N 132.338 112.254 109.332 1.751 -0.244 0.584 C04 T09 4 T09 C05 C05 C 0 1 N N R N N N 131.823 113.691 109.158 0.566 0.066 -0.332 C05 T09 5 T09 C06 C06 C 0 1 N N N N N N 130.297 113.681 108.873 -0.741 -0.199 0.417 C06 T09 6 T09 CA C07 C 0 1 N N S Y N N 129.715 115.102 108.975 -1.924 0.228 -0.454 C07 T09 7 T09 C C08 C 0 1 N N N Y N Y 128.181 115.074 108.792 -3.213 -0.145 0.231 C08 T09 8 T09 C67 C67 C 0 1 N N N N N N 132.560 114.357 108.005 0.633 -0.827 -1.573 C67 T09 9 T09 N N N 0 1 N N N Y Y N 129.955 115.637 110.300 -1.881 1.683 -0.658 N T09 10 T09 O O66 O 0 1 N N N Y N Y 127.598 114.087 109.101 -3.839 0.692 0.837 O66 T09 11 T09 OXT OXT O 0 1 N Y N Y N Y 127.384 116.249 108.278 -3.666 -1.407 0.167 OXT T09 12 T09 H011 H011 H 0 0 N N N N N N 133.369 109.774 113.143 5.639 -0.360 -0.831 H011 T09 13 T09 H012 H012 H 0 0 N N N N N N 133.123 111.553 113.093 5.532 1.276 -0.139 H012 T09 14 T09 H013 H013 H 0 0 N N N N N N 131.705 110.451 113.138 6.387 -0.010 0.746 H013 T09 15 T09 H021 H021 H 0 0 N N N N N N 132.319 109.568 110.870 4.251 -1.237 1.028 H021 T09 16 T09 H022 H022 H 0 0 N N N N N N 133.736 110.670 110.824 4.144 0.399 1.720 H022 T09 17 T09 H031 H031 H 0 0 N N N N N N 131.782 112.491 111.430 3.043 1.204 -0.351 H031 T09 18 T09 H032 H032 H 0 0 N N N N N N 130.788 111.294 110.533 3.150 -0.433 -1.043 H032 T09 19 T09 H042 H042 H 0 0 N N N N N N 131.978 111.630 108.501 1.763 -1.309 0.816 H042 T09 20 T09 H041 H041 H 0 0 N N N N N N 133.438 112.255 109.340 1.656 0.327 1.508 H041 T09 21 T09 H051 H051 H 0 0 N N N N N N 132.009 114.255 110.084 0.606 1.112 -0.635 H051 T09 22 T09 H062 H062 H 0 0 N N N N N N 129.797 113.032 109.607 -0.821 -1.263 0.642 H062 T09 23 T09 H061 H061 H 0 0 N N N N N N 130.122 113.291 107.860 -0.749 0.370 1.346 H061 T09 24 T09 HA H071 H 0 0 N N N Y N N 130.167 115.743 108.204 -1.866 -0.276 -1.419 H071 T09 25 T09 H672 H672 H 0 0 N N N N N N 133.640 114.361 108.213 -0.211 -0.606 -2.226 H672 T09 26 T09 H671 H671 H 0 0 N N N N N N 132.368 113.800 107.076 1.565 -0.638 -2.106 H671 T09 27 T09 H673 H673 H 0 0 N N N N N N 132.205 115.392 107.892 0.594 -1.873 -1.270 H673 T09 28 T09 H2 H2 H 0 1 N Y N Y Y N 130.940 115.677 110.471 -1.934 2.173 0.222 H2 T09 29 T09 H H H 0 1 N N N Y Y N 129.569 116.557 110.363 -1.056 1.951 -1.173 H T09 30 T09 HXT HXT H 0 1 N Y N Y N Y 126.460 116.027 108.270 -4.497 -1.599 0.622 HXT T09 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T09 C67 C05 SING N N 1 T09 C CA SING N N 2 T09 C O DOUB N N 3 T09 C06 CA SING N N 4 T09 C06 C05 SING N N 5 T09 CA N SING N N 6 T09 C05 C04 SING N N 7 T09 C04 C03 SING N N 8 T09 C03 C02 SING N N 9 T09 C02 C01 SING N N 10 T09 C OXT SING N N 11 T09 C01 H011 SING N N 12 T09 C01 H012 SING N N 13 T09 C01 H013 SING N N 14 T09 C02 H021 SING N N 15 T09 C02 H022 SING N N 16 T09 C03 H031 SING N N 17 T09 C03 H032 SING N N 18 T09 C04 H042 SING N N 19 T09 C04 H041 SING N N 20 T09 C05 H051 SING N N 21 T09 C06 H062 SING N N 22 T09 C06 H061 SING N N 23 T09 CA HA SING N N 24 T09 C67 H672 SING N N 25 T09 C67 H671 SING N N 26 T09 C67 H673 SING N N 27 T09 N H2 SING N N 28 T09 N H SING N N 29 T09 OXT HXT SING N N 30 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T09 SMILES ACDLabs 12.01 "NC(CC(C)CCCC)C(=O)O" T09 InChI InChI 1.06 "InChI=1S/C9H19NO2/c1-3-4-5-7(2)6-8(10)9(11)12/h7-8H,3-6,10H2,1-2H3,(H,11,12)/t7-,8+/m1/s1" T09 InChIKey InChI 1.06 YPMMOCARISFQBS-SFYZADRCSA-N T09 SMILES_CANONICAL CACTVS 3.385 "CCCC[C@@H](C)C[C@H](N)C(O)=O" T09 SMILES CACTVS 3.385 "CCCC[CH](C)C[CH](N)C(O)=O" T09 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@@H](C)C[C@@H](C(=O)O)N" T09 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC(C)CC(C(=O)O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier T09 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,4R)-2-amino-4-methyloctanoic acid" T09 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},4~{R})-2-azanyl-4-methyl-octanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T09 "Create component" 2022-07-13 RCSB T09 "Initial release" 2023-05-24 RCSB T09 "Modify backbone" 2023-11-03 PDBE #