data_T1F # _chem_comp.id T1F _chem_comp.name "(4R)-1-[1-[(S)-[1-cyclopentyl-3-(2-methylphenyl)pyrazol-4-yl]-(4-methylphenyl)methyl]-2-oxidanylidene-pyridin-3-yl]-3-methyl-2-oxidanylidene-N-(3-oxidanylidene-2-azabicyclo[2.2.2]octan-4-yl)imidazolidine-4-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H45 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-19 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 687.830 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T1F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8J3T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T1F C1 C1 C 0 1 N N R N N N -7.425 20.003 -27.301 3.824 1.712 -0.869 C1 T1F 1 T1F C2 C2 C 0 1 N N N N N N -6.867 21.148 -28.157 2.461 1.040 -0.615 C2 T1F 2 T1F C3 C3 C 0 1 N N N N N N -8.264 22.026 -26.483 2.595 2.988 0.583 C3 T1F 3 T1F C4 C4 C 0 1 N N N N N N -6.956 23.575 -27.793 0.502 1.770 0.851 C4 T1F 4 T1F C5 C5 C 0 1 N N N N N N -5.863 24.134 -27.153 0.021 2.620 1.809 C5 T1F 5 T1F C6 C6 C 0 1 N N N N N N -5.454 25.421 -27.499 -1.267 2.413 2.323 C6 T1F 6 T1F N1 N1 N 0 1 N N N N N N -7.394 22.289 -27.457 1.786 1.953 0.320 N1 T1F 7 T1F N2 N2 N 0 1 N N N N N N -7.190 25.682 -29.135 -1.542 0.536 0.922 N2 T1F 8 T1F N3 N3 N 0 1 Y N N N N N -5.971 28.538 -32.455 -5.124 1.344 -1.013 N3 T1F 9 T1F O1 O1 O 0 1 N N N N N N -8.639 23.849 -29.386 0.106 -0.066 -0.445 O1 T1F 10 T1F C7 C7 C 0 1 N N N N N N -6.124 26.170 -28.473 -2.019 1.383 1.874 C7 T1F 11 T1F C8 C8 C 0 1 N N S N N N -7.877 26.502 -30.145 -2.381 -0.567 0.449 C8 T1F 12 T1F C9 C9 C 0 1 Y N N N N N -6.874 27.153 -31.045 -3.569 -0.013 -0.294 C9 T1F 13 T1F C10 C10 C 0 1 Y N N N N N -7.097 28.349 -31.736 -4.060 1.241 -0.187 C10 T1F 14 T1F C11 C11 C 0 1 Y N N N N N -5.553 26.643 -31.461 -4.364 -0.709 -1.226 C11 T1F 15 T1F C12 C12 C 0 1 Y N N N N N -4.873 25.411 -31.095 -4.180 -2.120 -1.648 C12 T1F 16 T1F C13 C13 C 0 1 Y N N N N N -3.545 25.439 -30.486 -4.948 -2.646 -2.684 C13 T1F 17 T1F C14 C14 C 0 1 N N N N N N -2.895 26.769 -30.179 -5.969 -1.782 -3.380 C14 T1F 18 T1F C15 C15 C 0 1 Y N N N N N -2.925 24.225 -30.198 -4.773 -3.959 -3.073 C15 T1F 19 T1F O2 O2 O 0 1 N N N N N N -8.998 19.428 -28.945 5.439 0.967 0.683 O2 T1F 20 T1F O3 O3 O 0 1 N N N N N N -6.953 15.129 -27.541 7.821 1.001 -0.620 O3 T1F 21 T1F C39 C16 C 0 1 N N N N N N -7.910 15.243 -28.288 7.765 -0.205 -0.505 C39 T1F 22 T1F N6 N4 N 0 1 N N N N N N -8.529 14.211 -28.852 8.823 -0.973 -0.096 N6 T1F 23 T1F C36 C17 C 0 1 N N N N N N -9.637 14.536 -29.707 8.514 -2.419 -0.033 C36 T1F 24 T1F C37 C18 C 0 1 N N N N N N -10.660 15.300 -28.881 7.344 -2.613 0.939 C37 T1F 25 T1F C38 C19 C 0 1 N N N N N N -9.977 16.469 -28.174 6.144 -1.782 0.478 C38 T1F 26 T1F C35 C20 C 0 1 N N N N N N -9.074 15.429 -30.809 8.071 -2.872 -1.429 C35 T1F 27 T1F C34 C21 C 0 1 N N N N N N -8.513 16.705 -30.179 6.871 -2.041 -1.888 C34 T1F 28 T1F C33 C22 C 0 1 N N N N N N -8.525 16.585 -28.648 6.508 -1.017 -0.795 C33 T1F 29 T1F N5 N5 N 0 1 N N N N N N -7.847 17.706 -27.996 5.414 -0.148 -1.235 N5 T1F 30 T1F C32 C23 C 0 1 N N N N N N -8.156 19.005 -28.163 4.950 0.818 -0.417 C32 T1F 31 T1F O O4 O 0 1 N N N N N N -8.914 22.833 -25.812 2.286 3.897 1.330 O T1F 32 T1F N N6 N 0 1 N N N N N N -8.275 20.707 -26.343 3.773 2.932 -0.050 N T1F 33 T1F C C24 C 0 1 N N N N N N -8.995 19.947 -25.346 4.843 3.928 0.056 C T1F 34 T1F C31 C25 C 0 1 N N N N N N -7.652 24.371 -28.831 -0.308 0.701 0.409 C31 T1F 35 T1F C24 C26 C 0 1 Y N N N N N -8.958 27.344 -29.539 -2.859 -1.375 1.628 C24 T1F 36 T1F C30 C27 C 0 1 Y N N N N N -9.853 28.001 -30.377 -4.097 -1.117 2.187 C30 T1F 37 T1F C29 C28 C 0 1 Y N N N N N -10.875 28.776 -29.859 -4.535 -1.858 3.269 C29 T1F 38 T1F C27 C29 C 0 1 Y N N N N N -11.061 28.893 -28.487 -3.737 -2.858 3.790 C27 T1F 39 T1F C28 C30 C 0 1 N N N N N N -12.188 29.745 -27.951 -4.214 -3.666 4.970 C28 T1F 40 T1F C26 C31 C 0 1 Y N N N N N -10.201 28.229 -27.621 -2.500 -3.118 3.230 C26 T1F 41 T1F C25 C32 C 0 1 Y N N N N N -9.163 27.451 -28.148 -2.063 -2.379 2.147 C25 T1F 42 T1F N4 N7 N 0 1 Y N N N N N -5.037 27.514 -32.323 -5.298 0.112 -1.655 N4 T1F 43 T1F C19 C33 C 0 1 N N N N N N -5.472 29.489 -33.474 -5.955 2.536 -1.199 C19 T1F 44 T1F C23 C34 C 0 1 N N N N N N -6.324 30.721 -33.647 -6.024 3.343 0.114 C23 T1F 45 T1F C22 C35 C 0 1 N N N N N N -5.391 31.655 -34.411 -4.921 4.419 -0.042 C22 T1F 46 T1F C21 C36 C 0 1 N N N N N N -3.964 31.136 -34.240 -5.024 4.799 -1.540 C21 T1F 47 T1F C20 C37 C 0 1 N N N N N N -4.054 29.977 -33.270 -5.319 3.463 -2.251 C20 T1F 48 T1F C18 C38 C 0 1 Y N N N N N -5.465 24.214 -31.408 -3.234 -2.922 -1.013 C18 T1F 49 T1F C17 C39 C 0 1 Y N N N N N -4.817 23.029 -31.097 -3.067 -4.234 -1.410 C17 T1F 50 T1F C16 C40 C 0 1 Y N N N N N -3.558 23.026 -30.504 -3.837 -4.752 -2.435 C16 T1F 51 T1F H1 H1 H 0 1 N N N N N N -6.596 19.503 -26.779 3.936 1.963 -1.924 H1 T1F 52 T1F H2 H2 H 0 1 N N N N N N -7.240 21.100 -29.191 1.896 0.957 -1.543 H2 T1F 53 T1F H3 H3 H 0 1 N N N N N N -5.767 21.150 -28.164 2.596 0.059 -0.160 H3 T1F 54 T1F H4 H4 H 0 1 N N N N N N -5.333 23.579 -26.394 0.626 3.441 2.164 H4 T1F 55 T1F H5 H5 H 0 1 N N N N N N -4.597 25.852 -27.002 -1.659 3.077 3.080 H5 T1F 56 T1F H6 H6 H 0 1 N N N N N N -5.776 27.167 -28.700 -3.011 1.232 2.273 H6 T1F 57 T1F H7 H7 H 0 1 N N N N N N -8.407 25.783 -30.787 -1.801 -1.205 -0.217 H7 T1F 58 T1F H8 H8 H 0 1 N N N N N N -7.973 28.979 -31.702 -3.671 2.023 0.448 H8 T1F 59 T1F H9 H9 H 0 1 N N N N N N -3.173 27.088 -29.164 -5.502 -1.278 -4.226 H9 T1F 60 T1F H10 H10 H 0 1 N N N N N N -1.802 26.667 -30.245 -6.790 -2.405 -3.736 H10 T1F 61 T1F H11 H11 H 0 1 N N N N N N -3.237 27.521 -30.906 -6.353 -1.039 -2.681 H11 T1F 62 T1F H12 H12 H 0 1 N N N N N N -1.949 24.216 -29.735 -5.368 -4.367 -3.876 H12 T1F 63 T1F H13 H13 H 0 1 N N N N N N -8.241 13.267 -28.691 9.691 -0.605 0.130 H13 T1F 64 T1F H14 H14 H 0 1 N N N N N N -10.092 13.634 -30.142 9.385 -2.982 0.302 H14 T1F 65 T1F H15 H15 H 0 1 N N N N N N -11.451 15.684 -29.542 7.066 -3.666 0.966 H15 T1F 66 T1F H16 H16 H 0 1 N N N N N N -11.102 14.627 -28.132 7.644 -2.293 1.936 H16 T1F 67 T1F H17 H17 H 0 1 N N N N N N -10.513 17.401 -28.408 5.300 -2.443 0.278 H17 T1F 68 T1F H18 H18 H 0 1 N N N N N N -9.994 16.299 -27.087 5.872 -1.073 1.260 H18 T1F 69 T1F H19 H19 H 0 1 N N N N N N -9.874 15.689 -31.518 8.895 -2.736 -2.130 H19 T1F 70 T1F H20 H20 H 0 1 N N N N N N -8.272 14.897 -31.341 7.792 -3.925 -1.399 H20 T1F 71 T1F H21 H21 H 0 1 N N N N N N -7.480 16.858 -30.524 7.122 -1.518 -2.810 H21 T1F 72 T1F H22 H22 H 0 1 N N N N N N -9.131 17.563 -30.482 6.019 -2.699 -2.064 H22 T1F 73 T1F H23 H23 H 0 1 N N N N N N -7.093 17.489 -27.376 5.023 -0.267 -2.115 H23 T1F 74 T1F H24 H24 H 0 1 N N N N N N -9.580 20.632 -24.714 4.706 4.690 -0.711 H24 T1F 75 T1F H25 H25 H 0 1 N N N N N N -9.673 19.239 -25.844 4.809 4.394 1.041 H25 T1F 76 T1F H26 H26 H 0 1 N N N N N N -8.280 19.392 -24.721 5.808 3.441 -0.084 H26 T1F 77 T1F H27 H27 H 0 1 N N N N N N -9.748 27.905 -31.448 -4.721 -0.335 1.780 H27 T1F 78 T1F H28 H28 H 0 1 N N N N N N -11.539 29.298 -30.532 -5.502 -1.655 3.706 H28 T1F 79 T1F H29 H29 H 0 1 N N N N N N -13.091 29.128 -27.833 -4.762 -4.539 4.614 H29 T1F 80 T1F H30 H30 H 0 1 N N N N N N -11.899 30.163 -26.975 -3.357 -3.990 5.560 H30 T1F 81 T1F H31 H31 H 0 1 N N N N N N -12.394 30.565 -28.655 -4.870 -3.053 5.588 H31 T1F 82 T1F H32 H32 H 0 1 N N N N N N -10.332 28.312 -26.552 -1.876 -3.900 3.638 H32 T1F 83 T1F H33 H33 H 0 1 N N N N N N -8.505 26.921 -27.475 -1.098 -2.585 1.707 H33 T1F 84 T1F H34 H34 H 0 1 N N N N N N -5.485 28.960 -34.438 -6.957 2.247 -1.515 H34 T1F 85 T1F H35 H35 H 0 1 N N N N N N -6.608 31.149 -32.674 -7.002 3.812 0.222 H35 T1F 86 T1F H36 H36 H 0 1 N N N N N N -7.231 30.500 -34.229 -5.815 2.700 0.968 H36 T1F 87 T1F H37 H37 H 0 1 N N N N N N -5.469 32.675 -34.006 -5.130 5.281 0.591 H37 T1F 88 T1F H38 H38 H 0 1 N N N N N N -5.661 31.663 -35.477 -3.940 4.001 0.184 H38 T1F 89 T1F H39 H39 H 0 1 N N N N N N -3.563 30.795 -35.206 -5.840 5.504 -1.699 H39 T1F 90 T1F H40 H40 H 0 1 N N N N N N -3.316 31.926 -33.832 -4.082 5.220 -1.892 H40 T1F 91 T1F H41 H41 H 0 1 N N N N N N -3.324 29.193 -33.519 -4.392 3.025 -2.622 H41 T1F 92 T1F H42 H42 H 0 1 N N N N N N -3.894 30.312 -32.235 -6.013 3.623 -3.076 H42 T1F 93 T1F H43 H43 H 0 1 N N N N N N -6.430 24.195 -31.894 -2.632 -2.519 -0.212 H43 T1F 94 T1F H44 H44 H 0 1 N N N N N N -5.299 22.088 -31.319 -2.334 -4.856 -0.918 H44 T1F 95 T1F H45 H45 H 0 1 N N N N N N -3.071 22.088 -30.281 -3.703 -5.779 -2.742 H45 T1F 96 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T1F C22 C21 SING N N 1 T1F C22 C23 SING N N 2 T1F C21 C20 SING N N 3 T1F C23 C19 SING N N 4 T1F C19 C20 SING N N 5 T1F C19 N3 SING N N 6 T1F N3 N4 SING Y N 7 T1F N3 C10 SING Y N 8 T1F N4 C11 DOUB Y N 9 T1F C10 C9 DOUB Y N 10 T1F C11 C12 SING N N 11 T1F C11 C9 SING Y N 12 T1F C18 C17 DOUB Y N 13 T1F C18 C12 SING Y N 14 T1F C17 C16 SING Y N 15 T1F C12 C13 DOUB Y N 16 T1F C9 C8 SING N N 17 T1F C35 C34 SING N N 18 T1F C35 C36 SING N N 19 T1F C16 C15 DOUB Y N 20 T1F C13 C15 SING Y N 21 T1F C13 C14 SING N N 22 T1F C30 C29 DOUB Y N 23 T1F C30 C24 SING Y N 24 T1F C34 C33 SING N N 25 T1F C8 C24 SING N N 26 T1F C8 N2 SING N N 27 T1F C29 C27 SING Y N 28 T1F C36 C37 SING N N 29 T1F C36 N6 SING N N 30 T1F C24 C25 DOUB Y N 31 T1F O1 C31 DOUB N N 32 T1F N2 C31 SING N N 33 T1F N2 C7 SING N N 34 T1F O2 C32 DOUB N N 35 T1F C37 C38 SING N N 36 T1F N6 C39 SING N N 37 T1F C31 C4 SING N N 38 T1F C33 C39 SING N N 39 T1F C33 C38 SING N N 40 T1F C33 N5 SING N N 41 T1F C27 C28 SING N N 42 T1F C27 C26 DOUB Y N 43 T1F C7 C6 DOUB N N 44 T1F C39 O3 DOUB N N 45 T1F C32 N5 SING N N 46 T1F C32 C1 SING N N 47 T1F C2 N1 SING N N 48 T1F C2 C1 SING N N 49 T1F C25 C26 SING Y N 50 T1F C4 N1 SING N N 51 T1F C4 C5 DOUB N N 52 T1F C6 C5 SING N N 53 T1F N1 C3 SING N N 54 T1F C1 N SING N N 55 T1F C3 N SING N N 56 T1F C3 O DOUB N N 57 T1F N C SING N N 58 T1F C1 H1 SING N N 59 T1F C2 H2 SING N N 60 T1F C2 H3 SING N N 61 T1F C5 H4 SING N N 62 T1F C6 H5 SING N N 63 T1F C7 H6 SING N N 64 T1F C8 H7 SING N N 65 T1F C10 H8 SING N N 66 T1F C14 H9 SING N N 67 T1F C14 H10 SING N N 68 T1F C14 H11 SING N N 69 T1F C15 H12 SING N N 70 T1F N6 H13 SING N N 71 T1F C36 H14 SING N N 72 T1F C37 H15 SING N N 73 T1F C37 H16 SING N N 74 T1F C38 H17 SING N N 75 T1F C38 H18 SING N N 76 T1F C35 H19 SING N N 77 T1F C35 H20 SING N N 78 T1F C34 H21 SING N N 79 T1F C34 H22 SING N N 80 T1F N5 H23 SING N N 81 T1F C H24 SING N N 82 T1F C H25 SING N N 83 T1F C H26 SING N N 84 T1F C30 H27 SING N N 85 T1F C29 H28 SING N N 86 T1F C28 H29 SING N N 87 T1F C28 H30 SING N N 88 T1F C28 H31 SING N N 89 T1F C26 H32 SING N N 90 T1F C25 H33 SING N N 91 T1F C19 H34 SING N N 92 T1F C23 H35 SING N N 93 T1F C23 H36 SING N N 94 T1F C22 H37 SING N N 95 T1F C22 H38 SING N N 96 T1F C21 H39 SING N N 97 T1F C21 H40 SING N N 98 T1F C20 H41 SING N N 99 T1F C20 H42 SING N N 100 T1F C18 H43 SING N N 101 T1F C17 H44 SING N N 102 T1F C16 H45 SING N N 103 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T1F InChI InChI 1.06 "InChI=1S/C40H45N7O4/c1-25-14-16-27(17-15-25)35(31-23-47(29-10-5-6-11-29)43-34(31)30-12-7-4-9-26(30)2)45-22-8-13-32(37(45)49)46-24-33(44(3)39(46)51)36(48)42-40-20-18-28(19-21-40)41-38(40)50/h4,7-9,12-17,22-23,28-29,33,35H,5-6,10-11,18-21,24H2,1-3H3,(H,41,50)(H,42,48)/t28-,33-,35+,40-/m1/s1" T1F InChIKey InChI 1.06 GUMPNBZZBQKOPS-KFTXPEDNSA-N T1F SMILES_CANONICAL CACTVS 3.385 "CN1[C@H](CN(C1=O)C2=CC=CN([C@@H](c3ccc(C)cc3)c4cn(nc4c5ccccc5C)C6CCCC6)C2=O)C(=O)NC78CCC(CC7)NC8=O" T1F SMILES CACTVS 3.385 "CN1[CH](CN(C1=O)C2=CC=CN([CH](c3ccc(C)cc3)c4cn(nc4c5ccccc5C)C6CCCC6)C2=O)C(=O)NC78CCC(CC7)NC8=O" T1F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1)[C@@H](c2cn(nc2c3ccccc3C)C4CCCC4)N5C=CC=C(C5=O)N6C[C@@H](N(C6=O)C)C(=O)NC78CCC(CC7)NC8=O" T1F SMILES "OpenEye OEToolkits" 2.0.7 "Cc1ccc(cc1)C(c2cn(nc2c3ccccc3C)C4CCCC4)N5C=CC=C(C5=O)N6CC(N(C6=O)C)C(=O)NC78CCC(CC7)NC8=O" # _pdbx_chem_comp_identifier.comp_id T1F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(4~{R})-1-[1-[(~{S})-[1-cyclopentyl-3-(2-methylphenyl)pyrazol-4-yl]-(4-methylphenyl)methyl]-2-oxidanylidene-pyridin-3-yl]-3-methyl-2-oxidanylidene-~{N}-(3-oxidanylidene-2-azabicyclo[2.2.2]octan-4-yl)imidazolidine-4-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T1F "Create component" 2023-04-19 PDBJ T1F "Initial release" 2023-11-08 RCSB #