data_T32 # _chem_comp.id T32 _chem_comp.name ;6'-ALPHA-METHYL CARBOCYCLIC THYMIDINE 5'-MONOPHOSPHATE ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H19 N2 O7 P" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1996-12-07 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 334.262 _chem_comp.one_letter_code T _chem_comp.three_letter_code T32 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 290D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T32 P P P 0 1 N N N 8.115 14.525 11.539 -0.728 0.245 -4.147 P T32 1 T32 O1P O1P O 0 1 N N N 8.720 13.319 10.918 -0.447 1.655 -4.494 O1P T32 2 T32 O2P O2P O 0 1 N N N 6.974 14.478 12.489 -0.734 -0.646 -5.487 O2P T32 3 T32 O3P O3P O 0 1 N Y N 9.246 15.352 12.269 -2.165 0.144 -3.429 O3P T32 4 T32 "O5'" O5* O 0 1 N N N 7.747 15.519 10.395 0.410 -0.297 -3.146 "O5'" T32 5 T32 "C5'" C5* C 0 1 N N N 7.233 16.839 10.647 0.365 0.529 -1.982 "C5'" T32 6 T32 "C4'" C4* C 0 1 N N R 7.580 17.758 9.500 1.428 0.064 -0.985 "C4'" T32 7 T32 "C3'" C3* C 0 1 N N S 7.347 17.038 8.187 1.104 -1.358 -0.467 "C3'" T32 8 T32 "O3'" O3* O 0 1 N N N 6.760 17.921 7.274 1.607 -2.350 -1.365 "O3'" T32 9 T32 "C2'" C2* C 0 1 N N N 8.765 16.720 7.752 1.854 -1.408 0.887 "C2'" T32 10 T32 "C1'" C1* C 0 1 N N S 9.486 17.917 8.103 1.671 0.007 1.473 "C1'" T32 11 T32 N1 N1 N 0 1 N N N 10.920 17.890 7.841 0.533 0.025 2.396 N1 T32 12 T32 C2 C2 C 0 1 N N N 11.492 19.108 7.599 0.741 0.251 3.706 C2 T32 13 T32 O2 O2 O 0 1 N N N 10.884 20.169 7.587 1.872 0.444 4.109 O2 T32 14 T32 N3 N3 N 0 1 N N N 12.827 19.140 7.367 -0.286 0.278 4.575 N3 T32 15 T32 C4 C4 C 0 1 N N N 13.661 18.071 7.357 -1.546 0.066 4.144 C4 T32 16 T32 O4 O4 O 0 1 N N N 14.871 18.206 7.160 -2.475 0.085 4.931 O4 T32 17 T32 C5 C5 C 0 1 N N N 12.986 16.844 7.602 -1.778 -0.178 2.769 C5 T32 18 T32 C5M C5M C 0 1 N N N 13.864 15.607 7.605 -3.177 -0.418 2.262 C5M T32 19 T32 C6 C6 C 0 1 N N N 11.669 16.781 7.827 -0.730 -0.194 1.919 C6 T32 20 T32 "C'" C* C 0 1 N N S 9.020 18.161 9.508 1.401 0.943 0.282 "C'" T32 21 T32 "CM'" CM* C 0 1 N N N 8.958 19.630 9.895 2.490 2.015 0.200 "CM'" T32 22 T32 H2P H2P H 0 1 N N N 6.587 15.249 12.886 -1.428 -0.289 -6.058 H2P T32 23 T32 H3P H3P H 0 1 N N N 8.859 16.123 12.666 -2.309 -0.788 -3.220 H3P T32 24 T32 "H5'1" 1H5* H 0 0 N N N 7.582 17.243 11.626 -0.620 0.457 -1.522 "H5'1" T32 25 T32 "H5'2" 2H5* H 0 0 N N N 6.138 16.828 10.856 0.560 1.564 -2.264 "H5'2" T32 26 T32 "H4'" H4* H 0 1 N N N 6.938 18.669 9.545 2.417 0.087 -1.444 "H4'" T32 27 T32 "H3'" H3* H 0 1 N N N 6.737 16.114 8.322 0.031 -1.481 -0.320 "H3'" T32 28 T32 HA HA H 0 1 N N N 6.614 17.470 6.451 1.375 -3.210 -0.989 HA T32 29 T32 "H2'1" 1H2* H 0 0 N N N 8.867 16.411 6.686 1.405 -2.153 1.544 "H2'1" T32 30 T32 "H2'2" 2H2* H 0 0 N N N 9.184 15.781 8.182 2.911 -1.623 0.730 "H2'2" T32 31 T32 "H1'" H1* H 0 1 N N N 9.063 18.739 7.479 2.577 0.316 1.993 "H1'" T32 32 T32 H3 H3 H 0 1 N N N 13.243 20.053 7.183 -0.118 0.446 5.516 H3 T32 33 T32 H5M1 1H5M H 0 0 N N N 14.962 15.660 7.417 -3.879 -0.366 3.094 H5M1 T32 34 T32 H5M2 2H5M H 0 0 N N N 13.430 14.881 6.878 -3.431 0.341 1.524 H5M2 T32 35 T32 H5M3 3H5M H 0 0 N N N 13.711 15.084 8.578 -3.232 -1.405 1.802 H5M3 T32 36 T32 H6 H6 H 0 1 N N N 11.194 15.801 8.003 -0.888 -0.379 0.866 H6 T32 37 T32 "H'" H* H 0 1 N N N 9.609 17.567 10.245 0.423 1.412 0.390 "H'" T32 38 T32 "HM'1" 1HM* H 0 0 N N N 10.032 19.931 9.901 2.470 2.622 1.105 "HM'1" T32 39 T32 "HM'2" 2HM* H 0 0 N N N 8.410 19.840 10.843 3.464 1.536 0.105 "HM'2" T32 40 T32 "HM'3" 3HM* H 0 0 N N N 8.302 20.256 9.246 2.310 2.650 -0.667 "HM'3" T32 41 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T32 P O1P DOUB N N 1 T32 P O2P SING N N 2 T32 P O3P SING N N 3 T32 P "O5'" SING N N 4 T32 O2P H2P SING N N 5 T32 O3P H3P SING N N 6 T32 "O5'" "C5'" SING N N 7 T32 "C5'" "C4'" SING N N 8 T32 "C5'" "H5'1" SING N N 9 T32 "C5'" "H5'2" SING N N 10 T32 "C4'" "C3'" SING N N 11 T32 "C4'" "C'" SING N N 12 T32 "C4'" "H4'" SING N N 13 T32 "C3'" "O3'" SING N N 14 T32 "C3'" "C2'" SING N N 15 T32 "C3'" "H3'" SING N N 16 T32 "O3'" HA SING N N 17 T32 "C2'" "C1'" SING N N 18 T32 "C2'" "H2'1" SING N N 19 T32 "C2'" "H2'2" SING N N 20 T32 "C1'" N1 SING N N 21 T32 "C1'" "C'" SING N N 22 T32 "C1'" "H1'" SING N N 23 T32 N1 C2 SING N N 24 T32 N1 C6 SING N N 25 T32 C2 O2 DOUB N N 26 T32 C2 N3 SING N N 27 T32 N3 C4 SING N N 28 T32 N3 H3 SING N N 29 T32 C4 O4 DOUB N N 30 T32 C4 C5 SING N N 31 T32 C5 C5M SING N N 32 T32 C5 C6 DOUB N N 33 T32 C5M H5M1 SING N N 34 T32 C5M H5M2 SING N N 35 T32 C5M H5M3 SING N N 36 T32 C6 H6 SING N N 37 T32 "C'" "CM'" SING N N 38 T32 "C'" "H'" SING N N 39 T32 "CM'" "HM'1" SING N N 40 T32 "CM'" "HM'2" SING N N 41 T32 "CM'" "HM'3" SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T32 SMILES ACDLabs 10.04 "O=P(O)(O)OCC2C(C(N1C=C(C(=O)NC1=O)C)CC2O)C" T32 SMILES_CANONICAL CACTVS 3.341 "C[C@H]1[C@H](CO[P](O)(O)=O)[C@@H](O)C[C@@H]1N2C=C(C)C(=O)NC2=O" T32 SMILES CACTVS 3.341 "C[CH]1[CH](CO[P](O)(O)=O)[CH](O)C[CH]1N2C=C(C)C(=O)NC2=O" T32 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1[C@H](C[C@@H]([C@H]1COP(=O)(O)O)O)N2C=C(C(=O)NC2=O)C" T32 SMILES "OpenEye OEToolkits" 1.5.0 "CC1C(CC(C1COP(=O)(O)O)O)N2C=C(C(=O)NC2=O)C" T32 InChI InChI 1.03 "InChI=1S/C12H19N2O7P/c1-6-4-14(12(17)13-11(6)16)9-3-10(15)8(7(9)2)5-21-22(18,19)20/h4,7-10,15H,3,5H2,1-2H3,(H,13,16,17)(H2,18,19,20)/t7-,8-,9-,10-/m0/s1" T32 InChIKey InChI 1.03 LAMPGVURVUFMOO-XKNYDFJKSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier T32 "SYSTEMATIC NAME" ACDLabs 10.04 "[(1R,2S,3S,5S)-5-hydroxy-2-methyl-3-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)cyclopentyl]methyl dihydrogen phosphate" T32 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(1R,2S,3S,5S)-5-hydroxy-2-methyl-3-(5-methyl-2,4-dioxo-pyrimidin-1-yl)cyclopentyl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T32 "Create component" 1996-12-07 RCSB T32 "Modify descriptor" 2011-06-04 RCSB #