data_T3P
#

_chem_comp.id                                   T3P
_chem_comp.name                                 "THYMIDINE-3'-PHOSPHATE"
_chem_comp.type                                 "DNA LINKING"
_chem_comp.pdbx_type                            ATOMN
_chem_comp.formula                              "C10 H15 N2 O8 P"
_chem_comp.mon_nstd_parent_comp_id              DT
_chem_comp.pdbx_synonyms                        "ALPHA-ANOMERIC THYMIDINE-3'-PHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    1999-08-26
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       322.208
_chem_comp.one_letter_code                      T
_chem_comp.three_letter_code                    T3P
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1CY8
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T3P  P       P     P  0  1  N  N  N  37.583  17.167  43.526  -1.040  -0.030  -3.573  P       T3P   1  
T3P  OP1     O1P   O  0  1  N  N  N  37.873  16.366  42.288  -0.250   1.195  -3.822  OP1     T3P   2  
T3P  OP2     O2P   O  0  1  N  N  N  36.288  17.752  43.827  -1.427  -0.713  -4.979  OP2     T3P   3  
T3P  OP3     O3P   O  0  1  N  Y  N  38.739  17.816  44.176  -2.385   0.350  -2.774  OP3     T3P   4  
T3P  "O5'"   O5*   O  0  1  N  N  N  37.440  22.789  41.920   3.742   0.759  -1.645  "O5'"   T3P   5  
T3P  "C5'"   C5*   C  0  1  N  N  N  37.968  21.662  42.566   2.336   0.786  -1.900  "C5'"   T3P   6  
T3P  "C4'"   C4*   C  0  1  N  N  R  38.057  20.549  41.522   1.669  -0.404  -1.209  "C4'"   T3P   7  
T3P  "O4'"   O4*   O  0  1  N  N  N  38.971  20.970  40.466   1.769  -0.284   0.228  "O4'"   T3P   8  
T3P  "C3'"   C3*   C  0  1  N  N  S  38.617  19.276  42.111   0.141  -0.400  -1.469  "C3'"   T3P   9  
T3P  "O3'"   O3*   O  0  1  N  N  N  37.569  18.310  42.355  -0.168  -1.062  -2.697  "O3'"   T3P  10  
T3P  "C2'"   C2*   C  0  1  N  N  N  39.627  18.752  41.132  -0.395  -1.203  -0.259  "C2'"   T3P  11  
T3P  "C1'"   C1*   C  0  1  N  N  R  40.030  20.003  40.352   0.731  -1.105   0.788  "C1'"   T3P  12  
T3P  N1      N1    N  0  1  N  N  N  41.384  20.434  40.868   0.218  -0.491   2.015  N1      T3P  13  
T3P  C2      C2    C  0  1  N  N  N  42.496  19.752  40.315  -0.299   0.749   1.973  C2      T3P  14  
T3P  O2      O2    O  0  1  N  N  N  42.420  18.862  39.474  -0.335   1.348   0.916  O2      T3P  15  
T3P  N3      N3    N  0  1  N  N  N  43.735  20.127  40.763  -0.777   1.337   3.085  N3      T3P  16  
T3P  C4      C4    C  0  1  N  N  N  43.999  21.105  41.701  -0.748   0.685   4.265  C4      T3P  17  
T3P  O4      O4    O  0  1  N  N  N  45.170  21.310  41.983  -1.181   1.216   5.272  O4      T3P  18  
T3P  C5      C5    C  0  1  N  N  N  42.838  21.798  42.264  -0.202  -0.619   4.324  C5      T3P  19  
T3P  C5M     C5M   C  0  1  N  N  N  43.056  22.907  43.320  -0.154  -1.368   5.631  C5M     T3P  20  
T3P  C6      C6    C  0  1  N  N  N  41.580  21.451  41.839   0.270  -1.185   3.193  C6      T3P  21  
T3P  HOP2    2HOP  H  0  0  N  N  N  36.104  18.258  44.609  -1.947  -0.064  -5.472  HOP2    T3P  22  
T3P  HOP3    3HOP  H  0  0  N  N  N  38.555  18.322  44.958  -2.869  -0.474  -2.632  HOP3    T3P  23  
T3P  "H5'"   H5*   H  0  1  N  N  N  37.384  23.480  42.568   4.123   1.524  -2.097  "H5'"   T3P  24  
T3P  "H5'1"  1H5*  H  0  0  N  N  N  38.939  21.863  43.075   2.161   0.727  -2.974  "H5'1"  T3P  25  
T3P  "H5''"  2H5*  H  0  0  N  N  N  37.390  21.366  43.473   1.915   1.714  -1.513  "H5''"  T3P  26  
T3P  "H4'"   H4*   H  0  1  N  N  N  37.027  20.358  41.139   2.114  -1.340  -1.546  "H4'"   T3P  27  
T3P  "H3'"   H3*   H  0  1  N  N  N  39.095  19.473  43.098  -0.250   0.616  -1.467  "H3'"   T3P  28  
T3P  "H2'"   1H2*  H  0  1  N  N  N  40.477  18.196  41.592  -0.568  -2.242  -0.536  "H2'"   T3P  29  
T3P  "H2''"  2H2*  H  0  0  N  N  N  39.268  17.905  40.501  -1.310  -0.751   0.122  "H2''"  T3P  30  
T3P  "H1'"   H1*   H  0  1  N  N  N  40.152  19.839  39.255   1.121  -2.099   1.006  "H1'"   T3P  31  
T3P  H3      H3    H  0  1  N  N  N  44.532  19.633  40.362  -1.147   2.233   3.038  H3      T3P  32  
T3P  H51     1H5   H  0  1  N  N  N  42.172  23.434  43.748  -0.579  -0.749   6.421  H51     T3P  33  
T3P  H52     2H5   H  0  1  N  N  N  43.662  22.488  44.157  -0.729  -2.290   5.543  H52     T3P  34  
T3P  H53     3H5   H  0  1  N  N  N  43.756  23.666  42.900   0.880  -1.608   5.874  H53     T3P  35  
T3P  H6      H6    H  0  1  N  N  N  40.724  21.990  42.278   0.687  -2.181   3.218  H6      T3P  36  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T3P  P      OP1     DOUB  N  N   1  
T3P  P      OP2     SING  N  N   2  
T3P  P      OP3     SING  N  N   3  
T3P  P      "O3'"   SING  N  N   4  
T3P  OP2    HOP2    SING  N  N   5  
T3P  OP3    HOP3    SING  N  N   6  
T3P  "O5'"  "C5'"   SING  N  N   7  
T3P  "O5'"  "H5'"   SING  N  N   8  
T3P  "C5'"  "C4'"   SING  N  N   9  
T3P  "C5'"  "H5'1"  SING  N  N  10  
T3P  "C5'"  "H5''"  SING  N  N  11  
T3P  "C4'"  "O4'"   SING  N  N  12  
T3P  "C4'"  "C3'"   SING  N  N  13  
T3P  "C4'"  "H4'"   SING  N  N  14  
T3P  "O4'"  "C1'"   SING  N  N  15  
T3P  "C3'"  "O3'"   SING  N  N  16  
T3P  "C3'"  "C2'"   SING  N  N  17  
T3P  "C3'"  "H3'"   SING  N  N  18  
T3P  "C2'"  "C1'"   SING  N  N  19  
T3P  "C2'"  "H2'"   SING  N  N  20  
T3P  "C2'"  "H2''"  SING  N  N  21  
T3P  "C1'"  N1      SING  N  N  22  
T3P  "C1'"  "H1'"   SING  N  N  23  
T3P  N1     C2      SING  N  N  24  
T3P  N1     C6      SING  N  N  25  
T3P  C2     O2      DOUB  N  N  26  
T3P  C2     N3      SING  N  N  27  
T3P  N3     C4      SING  N  N  28  
T3P  N3     H3      SING  N  N  29  
T3P  C4     O4      DOUB  N  N  30  
T3P  C4     C5      SING  N  N  31  
T3P  C5     C5M     SING  N  N  32  
T3P  C5     C6      DOUB  N  N  33  
T3P  C5M    H51     SING  N  N  34  
T3P  C5M    H52     SING  N  N  35  
T3P  C5M    H53     SING  N  N  36  
T3P  C6     H6      SING  N  N  37  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T3P  SMILES            ACDLabs               10.04  "O=C1NC(=O)N(C=C1C)C2OC(C(OP(=O)(O)O)C2)CO"  
T3P  SMILES_CANONICAL  CACTVS                3.341  "CC1=CN([C@H]2C[C@H](O[P](O)(O)=O)[C@@H](CO)O2)C(=O)NC1=O"  
T3P  SMILES            CACTVS                3.341  "CC1=CN([CH]2C[CH](O[P](O)(O)=O)[CH](CO)O2)C(=O)NC1=O"  
T3P  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)CO)OP(=O)(O)O"  
T3P  SMILES            "OpenEye OEToolkits"  1.5.0  "CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)OP(=O)(O)O"  
T3P  InChI             InChI                 1.03   "InChI=1S/C10H15N2O8P/c1-5-3-12(10(15)11-9(5)14)8-2-6(7(4-13)19-8)20-21(16,17)18/h3,6-8,13H,2,4H2,1H3,(H,11,14,15)(H2,16,17,18)/t6-,7+,8+/m0/s1"  
T3P  InChIKey          InChI                 1.03   XXYIANZGUOSQHY-XLPZGREQSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
T3P  "SYSTEMATIC NAME"  ACDLabs               10.04  "3'-thymidylic acid"  
T3P  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "[(2R,3S,5R)-2-(hydroxymethyl)-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-3-yl] dihydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T3P  "Create component"   1999-08-26  RCSB  
T3P  "Modify descriptor"  2011-06-04  RCSB  
T3P  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     T3P
_pdbx_chem_comp_synonyms.name        "ALPHA-ANOMERIC THYMIDINE-3'-PHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##