data_T3R
#
_chem_comp.id T3R
_chem_comp.name N,5-dimethyl-L-norleucine
_chem_comp.type "L-peptide linking"
_chem_comp.pdbx_type ATOMP
_chem_comp.formula "C8 H17 N O2"
_chem_comp.mon_nstd_parent_comp_id LEU
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-07-15
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 159.226
_chem_comp.one_letter_code L
_chem_comp.three_letter_code T3R
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8DNY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T3R C52 C52 C 0 1 N N N N N N 122.299 123.400 112.397 -2.012 -2.322 0.581 C52 T3R 1
T3R CA C53 C 0 1 N N S Y N N 124.060 124.263 110.835 -0.941 -0.170 0.284 C53 T3R 2
T3R C C54 C 0 1 N N N Y N Y 124.740 122.860 111.003 -2.085 0.749 -0.060 C54 T3R 3
T3R C70 C70 C 0 1 N N N N N N 124.670 125.328 111.770 0.362 0.407 -0.273 C70 T3R 4
T3R C71 C71 C 0 1 N N N N N N 124.160 126.800 111.426 1.538 -0.459 0.182 C71 T3R 5
T3R C72 C72 C 0 1 N N N N N N 123.662 127.614 112.662 2.842 0.117 -0.376 C72 T3R 6
T3R C73 C73 C 0 1 N N N N N N 124.728 127.724 113.721 3.093 1.496 0.238 C73 T3R 7
T3R C74 C74 C 0 1 N N N N N N 122.353 127.036 113.240 4.003 -0.816 -0.026 C74 T3R 8
T3R N N51 N 0 1 N N N Y Y N 122.665 124.055 111.155 -1.182 -1.494 -0.305 N51 T3R 9
T3R O O69 O 0 1 N N N Y N Y 125.379 122.621 111.982 -2.734 0.557 -1.061 O69 T3R 10
T3R H521 H521 H 0 0 N N N N N N 121.203 123.331 112.467 -1.470 -2.519 1.505 H521 T3R 11
T3R H522 H522 H 0 0 N N N N N N 122.732 122.389 112.420 -2.938 -1.794 0.808 H522 T3R 12
T3R H523 H523 H 0 0 N N N N N N 122.684 123.983 113.246 -2.242 -3.265 0.086 H523 T3R 13
T3R HA H531 H 0 0 N N N Y N N 124.172 124.591 109.791 -0.863 -0.263 1.367 H531 T3R 14
T3R H702 H702 H 0 0 N N N N N N 124.390 125.090 112.807 0.318 0.417 -1.362 H702 T3R 15
T3R H701 H701 H 0 0 N N N N N N 125.765 125.301 111.670 0.496 1.424 0.095 H701 T3R 16
T3R H711 H711 H 0 0 N N N N N N 124.990 127.352 110.962 1.582 -0.470 1.271 H711 T3R 17
T3R H712 H712 H 0 0 N N N N N N 123.329 126.718 110.710 1.405 -1.477 -0.187 H712 T3R 18
T3R H721 H721 H 0 0 N N N N N N 123.439 128.631 112.308 2.764 0.211 -1.459 H721 T3R 19
T3R H733 H733 H 0 0 N N N N N N 124.341 128.302 114.573 3.171 1.403 1.321 H733 T3R 20
T3R H731 H731 H 0 0 N N N N N N 125.013 126.717 114.061 4.021 1.907 -0.159 H731 T3R 21
T3R H732 H732 H 0 0 N N N N N N 125.609 128.233 113.303 2.266 2.161 -0.011 H732 T3R 22
T3R H743 H743 H 0 0 N N N N N N 122.038 127.636 114.106 3.824 -1.798 -0.464 H743 T3R 23
T3R H741 H741 H 0 0 N N N N N N 121.568 127.064 112.469 4.931 -0.405 -0.423 H741 T3R 24
T3R H742 H742 H 0 0 N N N N N N 122.520 125.996 113.556 4.081 -0.909 1.057 H742 T3R 25
T3R H H2 H 0 1 N Y N Y Y N 122.233 124.957 111.165 -1.601 -1.412 -1.220 H2 T3R 26
T3R OXT OXT O 0 1 N Y N Y N Y 124.550 121.807 109.938 -2.383 1.780 0.746 OXT T3R 27
T3R HXT HXT H 0 1 N Y N Y N Y 125.000 121.011 110.195 -3.125 2.342 0.483 HXT T3R 28
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T3R CA C SING N N 1
T3R CA N SING N N 2
T3R CA C70 SING N N 3
T3R C O DOUB N N 4
T3R N C52 SING N N 5
T3R C71 C70 SING N N 6
T3R C71 C72 SING N N 7
T3R C72 C74 SING N N 8
T3R C72 C73 SING N N 9
T3R C52 H521 SING N N 10
T3R C52 H522 SING N N 11
T3R C52 H523 SING N N 12
T3R CA HA SING N N 13
T3R C70 H702 SING N N 14
T3R C70 H701 SING N N 15
T3R C71 H711 SING N N 16
T3R C71 H712 SING N N 17
T3R C72 H721 SING N N 18
T3R C73 H733 SING N N 19
T3R C73 H731 SING N N 20
T3R C73 H732 SING N N 21
T3R C74 H743 SING N N 22
T3R C74 H741 SING N N 23
T3R C74 H742 SING N N 24
T3R N H SING N N 25
T3R C OXT SING N N 26
T3R OXT HXT SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T3R SMILES ACDLabs 12.01 "CNC(CCC(C)C)C(=O)O"
T3R InChI InChI 1.06 "InChI=1S/C8H17NO2/c1-6(2)4-5-7(9-3)8(10)11/h6-7,9H,4-5H2,1-3H3,(H,10,11)/t7-/m0/s1"
T3R InChIKey InChI 1.06 NEBSZBVQOBTMPC-ZETCQYMHSA-N
T3R SMILES_CANONICAL CACTVS 3.385 "CN[C@@H](CCC(C)C)C(O)=O"
T3R SMILES CACTVS 3.385 "CN[CH](CCC(C)C)C(O)=O"
T3R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)CC[C@@H](C(=O)O)NC"
T3R SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CCC(C(=O)O)NC"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
T3R "SYSTEMATIC NAME" ACDLabs 12.01 N,5-dimethyl-L-norleucine
T3R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-5-methyl-2-(methylamino)hexanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T3R "Create component" 2022-07-15 RCSB
T3R "Initial release" 2023-05-24 RCSB
T3R "Modify backbone" 2023-11-03 PDBE
T3R "Modify PCM" 2024-09-27 PDBE
#
loop_
_pdbx_chem_comp_pcm.pcm_id
_pdbx_chem_comp_pcm.comp_id
_pdbx_chem_comp_pcm.modified_residue_id
_pdbx_chem_comp_pcm.type
_pdbx_chem_comp_pcm.category
_pdbx_chem_comp_pcm.position
_pdbx_chem_comp_pcm.polypeptide_position
_pdbx_chem_comp_pcm.comp_id_linking_atom
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession
1 T3R LEU Norleucine "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ?
2 T3R LEU Methylation "Named protein modification" "Amino-acid side chain and backbone" "Any position" ? ? ? ?
#