data_T4K # _chem_comp.id T4K _chem_comp.name ;(2R,3R,4S,5S,6R)-3,4-DIHYDROXY-5-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)IMINO]-6-METHYLTETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,5R)-3-HYDROXY-5-(5-METHYL-2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)TETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN DIPHOSPHATE ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H35 N4 O19 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-05-03 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 776.471 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T4K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T4K N1L N1L N 0 1 Y N N 20.264 -10.954 -45.497 5.521 -4.346 -0.200 N1L T4K 1 T4K C2L C2L C 0 1 Y N N 19.046 -10.754 -45.942 4.283 -3.895 -0.200 C2L T4K 2 T4K C2A C2A C 0 1 N N N 18.794 -10.705 -47.444 3.136 -4.871 -0.243 C2A T4K 3 T4K C3L C3L C 0 1 Y N N 17.984 -10.589 -45.047 4.023 -2.532 -0.159 C3L T4K 4 T4K O3L O3L O 0 1 N N N 16.703 -10.376 -45.532 2.746 -2.073 -0.158 O3L T4K 5 T4K C4L C4L C 0 1 Y N N 18.251 -10.639 -43.625 5.104 -1.637 -0.119 C4L T4K 6 T4K C4A C4A C 0 1 N N N 17.200 -10.469 -42.657 4.881 -0.179 -0.074 C4A T4K 7 T4K C5L C5L C 0 1 Y N N 19.581 -10.832 -43.221 6.399 -2.168 -0.121 C5L T4K 8 T4K C6L C6L C 0 1 Y N N 20.557 -10.991 -44.199 6.562 -3.537 -0.163 C6L T4K 9 T4K C5B C5B C 0 1 N N N 19.960 -10.900 -41.734 7.599 -1.257 -0.079 C5B T4K 10 T4K OP4 OP4 O 0 1 N N N 19.577 -12.183 -41.201 8.794 -2.041 -0.091 OP4 T4K 11 T4K PL PL P 0 1 N N N 19.375 -12.118 -39.585 10.267 -1.394 -0.054 PL T4K 12 T4K OP1 OP1 O 0 1 N N N 18.086 -11.230 -39.159 10.410 -0.427 -1.166 OP1 T4K 13 T4K OP2 OP2 O 0 1 N N N 19.186 -13.610 -39.064 10.486 -0.635 1.349 OP2 T4K 14 T4K OP3 OP3 O 0 1 N N N 20.648 -11.478 -38.928 11.368 -2.558 -0.211 OP3 T4K 15 T4K C1G C1G C 0 1 N N R 12.979 -8.374 -40.879 1.616 3.958 0.115 C1G T4K 16 T4K C2G C2G C 0 1 N N R 13.885 -9.322 -40.055 2.385 3.677 -1.178 C2G T4K 17 T4K O2G O2G O 0 1 N N N 14.238 -8.675 -38.820 1.598 4.082 -2.300 O2G T4K 18 T4K C3G C3G C 0 1 N N S 15.182 -9.689 -40.827 2.678 2.176 -1.273 C3G T4K 19 T4K O3G O3G O 0 1 N N N 15.819 -10.761 -40.132 3.460 1.915 -2.441 O3G T4K 20 T4K C4G C4G C 0 1 N N S 14.823 -10.098 -42.287 3.455 1.739 -0.028 C4G T4K 21 T4K N4A N4A N 0 1 N N N 15.952 -10.278 -43.104 3.677 0.292 -0.072 N4A T4K 22 T4K C5G C5G C 0 1 N N R 13.952 -8.968 -42.910 2.645 2.095 1.221 C5G T4K 23 T4K C6G C6G C 0 1 N N N 13.713 -9.226 -44.417 3.441 1.715 2.471 C6G T4K 24 T4K O5G O5G O 0 1 N N N 12.706 -8.866 -42.209 2.381 3.499 1.232 O5G T4K 25 T4K P2 P2 P 0 1 N N S 12.558 -6.031 -40.274 -0.954 3.816 0.833 P2 T4K 26 T4K O3P O3P O 0 1 N N N 13.355 -4.666 -39.918 -0.709 3.803 2.424 O3P T4K 27 T4K O4P O4P O 0 1 N N N 11.412 -5.716 -41.380 -1.240 5.199 0.389 O4P T4K 28 T4K OPP OPP O 0 1 N N N 11.948 -6.736 -38.885 -2.206 2.869 0.476 OPP T4K 29 T4K P P P 0 1 N N R 10.591 -6.040 -38.239 -3.804 3.055 0.538 P T4K 30 T4K O1P O1P O 0 1 N N N 10.834 -5.852 -36.683 -4.294 2.972 2.069 O1P T4K 31 T4K O2P O2P O 0 1 N N N 10.243 -4.604 -38.857 -4.169 4.374 -0.025 O2P T4K 32 T4K O5 O5 O 0 1 N N N 9.360 -7.050 -38.420 -4.514 1.891 -0.317 O5 T4K 33 T4K C5 C5 C 0 1 N N N 9.004 -7.064 -39.796 -5.924 1.840 -0.542 C5 T4K 34 T4K C4 C4 C 0 1 N N R 7.572 -7.589 -39.863 -6.262 0.611 -1.388 C4 T4K 35 T4K O4 O4 O 0 1 N N N 7.477 -8.847 -39.135 -6.060 -0.597 -0.623 O4 T4K 36 T4K C3 C3 C 0 1 N N S 6.576 -6.602 -39.165 -7.764 0.604 -1.750 C3 T4K 37 T4K O3 O3 O 0 1 N N N 5.342 -6.516 -39.892 -7.964 1.117 -3.068 O3 T4K 38 T4K C2 C2 C 0 1 N N N 6.351 -7.248 -37.788 -8.158 -0.889 -1.685 C2 T4K 39 T4K C1 C1 C 0 1 N N R 6.495 -8.738 -38.093 -6.847 -1.606 -1.292 C1 T4K 40 T4K N11 N11 N 0 1 N N N 6.976 -9.489 -36.915 -7.128 -2.720 -0.382 N11 T4K 41 T4K C61 C61 C 0 1 N N N 8.313 -9.417 -36.551 -6.817 -3.998 -0.758 C61 T4K 42 T4K C51 C51 C 0 1 N N N 8.770 -10.126 -35.481 -7.076 -5.024 0.081 C51 T4K 43 T4K C5A C5A C 0 1 N N N 10.244 -10.055 -35.039 -6.739 -6.438 -0.316 C5A T4K 44 T4K C21 C21 C 0 1 N N N 6.121 -10.281 -36.229 -7.685 -2.475 0.818 C21 T4K 45 T4K O21 O21 O 0 1 N N N 4.940 -10.337 -36.557 -7.950 -1.331 1.134 O21 T4K 46 T4K N31 N31 N 0 1 N N N 6.553 -11.000 -35.161 -7.953 -3.478 1.674 N31 T4K 47 T4K C41 C41 C 0 1 N N N 7.851 -10.943 -34.764 -7.667 -4.753 1.339 C41 T4K 48 T4K O41 O41 O 0 1 N N N 8.231 -11.599 -33.799 -7.909 -5.661 2.112 O41 T4K 49 T4K O1G O1G O 0 1 N N N 13.577 -7.071 -40.947 0.362 3.273 0.083 O1G T4K 50 T4K H2A1 1H2A H 0 0 N N N 17.711 -10.693 -47.634 2.848 -5.139 0.773 H2A1 T4K 51 T4K H2A2 2H2A H 0 0 N N N 19.250 -9.795 -47.863 2.288 -4.412 -0.752 H2A2 T4K 52 T4K H2A3 3H2A H 0 0 N N N 19.240 -11.591 -47.919 3.441 -5.767 -0.782 H2A3 T4K 53 T4K HO3L HO3L H 0 0 N N N 16.093 -10.327 -44.805 2.366 -1.968 0.725 HO3L T4K 54 T4K H4A1 1H4A H 0 0 N N N 17.412 -10.495 -41.598 5.724 0.496 -0.043 H4A1 T4K 55 T4K H6L H6L H 0 1 N N N 21.582 -11.149 -43.897 7.559 -3.954 -0.165 H6L T4K 56 T4K H5B1 1H5B H 0 0 N N N 21.047 -10.767 -41.626 7.587 -0.600 -0.949 H5B1 T4K 57 T4K H5B2 2H5B H 0 0 N N N 19.437 -10.103 -41.185 7.567 -0.656 0.830 H5B2 T4K 58 T4K HOP2 HOP2 H 0 0 N N N 19.148 -14.202 -39.806 10.407 -1.208 2.123 HOP2 T4K 59 T4K HOP3 HOP3 H 0 0 N N N 21.316 -11.349 -39.591 12.282 -2.240 -0.198 HOP3 T4K 60 T4K H1G H1G H 0 1 N N N 12.011 -8.320 -40.359 1.442 5.030 0.210 H1G T4K 61 T4K H2G H2G H 0 1 N N N 13.328 -10.251 -39.863 3.324 4.231 -1.171 H2G T4K 62 T4K HO2G HO2G H 0 0 N N N 14.316 -9.326 -38.132 1.370 5.022 -2.302 HO2G T4K 63 T4K H3G H3G H 0 1 N N N 15.867 -8.830 -40.879 1.740 1.625 -1.330 H3G T4K 64 T4K HO3G HO3G H 0 0 N N N 15.961 -11.486 -40.729 3.030 2.174 -3.267 HO3G T4K 65 T4K H4G H4G H 0 1 N N N 14.292 -11.060 -42.237 4.416 2.254 0.002 H4G T4K 66 T4K H5G H5G H 0 1 N N N 14.491 -8.014 -42.812 1.702 1.548 1.211 H5G T4K 67 T4K H6G1 1H6G H 0 0 N N N 13.656 -8.265 -44.950 4.383 2.263 2.482 H6G1 T4K 68 T4K H6G2 2H6G H 0 0 N N N 14.544 -9.822 -44.823 2.864 1.969 3.361 H6G2 T4K 69 T4K H6G3 3H6G H 0 0 N N N 12.769 -9.775 -44.550 3.643 0.645 2.463 H6G3 T4K 70 T4K HO3P HO3P H 0 0 N N N 13.511 -4.625 -38.982 -0.516 2.927 2.785 HO3P T4K 71 T4K HO1P HO1P H 0 0 N N N 11.767 -5.814 -36.510 -4.088 2.133 2.503 HO1P T4K 72 T4K H51 1H5 H 0 1 N N N 9.064 -6.051 -40.220 -6.443 1.776 0.415 H51 T4K 73 T4K H52 2H5 H 0 1 N N N 9.688 -7.699 -40.378 -6.241 2.741 -1.067 H52 T4K 74 T4K H4 H4 H 0 1 N N N 7.317 -7.708 -40.927 -5.654 0.596 -2.293 H4 T4K 75 T4K H3 H3 H 0 1 N N N 6.961 -5.573 -39.106 -8.334 1.183 -1.024 H3 T4K 76 T4K HO3 HO3 H 0 1 N N N 4.615 -6.497 -39.281 -8.890 1.135 -3.347 HO3 T4K 77 T4K H21 1H2 H 0 1 N N N 7.092 -6.908 -37.050 -8.923 -1.049 -0.926 H21 T4K 78 T4K H22 2H2 H 0 1 N N N 5.382 -6.987 -37.338 -8.505 -1.235 -2.658 H22 T4K 79 T4K H1 H1 H 0 1 N N N 5.519 -9.155 -38.382 -6.329 -1.964 -2.182 H1 T4K 80 T4K H61 H61 H 0 1 N N N 8.993 -8.798 -37.117 -6.367 -4.185 -1.722 H61 T4K 81 T4K H5A1 1H5A H 0 0 N N N 10.893 -10.038 -35.927 -5.725 -6.674 0.005 H5A1 T4K 82 T4K H5A2 2H5A H 0 0 N N N 10.406 -9.141 -34.449 -7.439 -7.125 0.159 H5A2 T4K 83 T4K H5A3 3H5A H 0 0 N N N 10.485 -10.936 -34.425 -6.811 -6.538 -1.399 H5A3 T4K 84 T4K HN31 HN31 H 0 0 N N N 5.908 -11.578 -34.661 -8.355 -3.284 2.535 HN31 T4K 85 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T4K N1L C2L DOUB Y N 1 T4K N1L C6L SING Y N 2 T4K C2L C2A SING N N 3 T4K C2L C3L SING Y N 4 T4K C2A H2A1 SING N N 5 T4K C2A H2A2 SING N N 6 T4K C2A H2A3 SING N N 7 T4K C3L O3L SING N N 8 T4K C3L C4L DOUB Y N 9 T4K O3L HO3L SING N N 10 T4K C4L C5L SING Y N 11 T4K C4L C4A SING N N 12 T4K C4A N4A DOUB N N 13 T4K C4A H4A1 SING N N 14 T4K C5L C6L DOUB Y N 15 T4K C5L C5B SING N N 16 T4K C6L H6L SING N N 17 T4K C5B OP4 SING N N 18 T4K C5B H5B1 SING N N 19 T4K C5B H5B2 SING N N 20 T4K OP4 PL SING N N 21 T4K PL OP1 DOUB N N 22 T4K PL OP2 SING N N 23 T4K PL OP3 SING N N 24 T4K OP2 HOP2 SING N N 25 T4K OP3 HOP3 SING N N 26 T4K C1G O5G SING N N 27 T4K C1G O1G SING N N 28 T4K C1G C2G SING N N 29 T4K C1G H1G SING N N 30 T4K C2G C3G SING N N 31 T4K C2G O2G SING N N 32 T4K C2G H2G SING N N 33 T4K O2G HO2G SING N N 34 T4K C3G C4G SING N N 35 T4K C3G O3G SING N N 36 T4K C3G H3G SING N N 37 T4K O3G HO3G SING N N 38 T4K C4G N4A SING N N 39 T4K C4G C5G SING N N 40 T4K C4G H4G SING N N 41 T4K C5G C6G SING N N 42 T4K C5G O5G SING N N 43 T4K C5G H5G SING N N 44 T4K C6G H6G1 SING N N 45 T4K C6G H6G2 SING N N 46 T4K C6G H6G3 SING N N 47 T4K P2 O4P DOUB N N 48 T4K P2 O1G SING N N 49 T4K P2 O3P SING N N 50 T4K P2 OPP SING N N 51 T4K O3P HO3P SING N N 52 T4K OPP P SING N N 53 T4K P O2P DOUB N N 54 T4K P O5 SING N N 55 T4K P O1P SING N N 56 T4K O1P HO1P SING N N 57 T4K O5 C5 SING N N 58 T4K C5 C4 SING N N 59 T4K C5 H51 SING N N 60 T4K C5 H52 SING N N 61 T4K C4 C3 SING N N 62 T4K C4 O4 SING N N 63 T4K C4 H4 SING N N 64 T4K O4 C1 SING N N 65 T4K C3 O3 SING N N 66 T4K C3 C2 SING N N 67 T4K C3 H3 SING N N 68 T4K O3 HO3 SING N N 69 T4K C2 C1 SING N N 70 T4K C2 H21 SING N N 71 T4K C2 H22 SING N N 72 T4K C1 N11 SING N N 73 T4K C1 H1 SING N N 74 T4K N11 C61 SING N N 75 T4K N11 C21 SING N N 76 T4K C61 C51 DOUB N N 77 T4K C61 H61 SING N N 78 T4K C51 C5A SING N N 79 T4K C51 C41 SING N N 80 T4K C5A H5A1 SING N N 81 T4K C5A H5A2 SING N N 82 T4K C5A H5A3 SING N N 83 T4K C21 O21 DOUB N N 84 T4K C21 N31 SING N N 85 T4K N31 C41 SING N N 86 T4K N31 HN31 SING N N 87 T4K C41 O41 DOUB N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T4K SMILES ACDLabs 10.04 "O=P(OC2OC(C(/N=C/c1c(cnc(c1O)C)COP(=O)(O)O)C(O)C2O)C)(O)OP(=O)(O)OCC4OC(N3C=C(C(=O)NC3=O)C)CC4O" T4K SMILES_CANONICAL CACTVS 3.341 "C[C@H]1O[C@H](O[P@@](O)(=O)O[P@@](O)(=O)OC[C@H]2O[C@H](C[C@@H]2O)N3C=C(C)C(=O)NC3=O)[C@H](O)[C@@H](O)[C@@H]1N=Cc4c(O)c(C)ncc4CO[P](O)(O)=O" T4K SMILES CACTVS 3.341 "C[CH]1O[CH](O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH](C[CH]2O)N3C=C(C)C(=O)NC3=O)[CH](O)[CH](O)[CH]1N=Cc4c(O)c(C)ncc4CO[P](O)(O)=O" T4K SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)\C=N\[C@@H]2[C@H](O[C@@H]([C@@H]([C@H]2O)O)O[P@](=O)(O)O[P@](=O)(O)OC[C@@H]3[C@H](C[C@@H](O3)N4C=C(C(=O)NC4=O)C)O)C)O" T4K SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NC2C(OC(C(C2O)O)OP(=O)(O)OP(=O)(O)OCC3C(CC(O3)N4C=C(C(=O)NC4=O)C)O)C)O" T4K InChI InChI 1.03 ;InChI=1S/C24H35N4O19P3/c1-10-7-28(24(34)27-22(10)33)17-4-15(29)16(45-17)9-43-49(38,39)47-50(40,41)46-23-21(32)20(31)18(12(3)44-23)26-6-14-13(8-42-48(35,36)37)5-25-11(2)19(14)30/h5-7,12,15-18,20-21,23,29-32H,4,8-9H2,1-3H3,(H,38,39)(H,40,41)(H,27,33,34)(H2,35,36,37)/b26-6+/t12-,15+,16-,17-,18-,20+,21-,23-/m1/s1 ; T4K InChIKey InChI 1.03 LEIRFGMKEVPNBT-ZBVJAJKCSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier T4K "SYSTEMATIC NAME" ACDLabs 10.04 ;(2R,3R,4S,5S,6R)-3,4-dihydroxy-5-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name) ; T4K "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4S,5S,6R)-3,4-dihydroxy-5-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylideneamino]-6-methyl-oxan-2-yl] [hydroxy-[[(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T4K "Create component" 2007-05-03 PDBJ T4K "Modify descriptor" 2011-06-04 RCSB #