data_T51 # _chem_comp.id T51 _chem_comp.name "N-[2-({2-[({4-[(4-methylpiperazin-1-yl)methyl]benzoyl}amino)methyl]benzyl}oxy)phenyl]-3-nitrobenzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H35 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-09-30 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 593.672 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T51 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DV8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T51 OAD O1 O 0 1 N N N N N N -19.009 18.098 -25.901 10.721 1.508 -0.380 OAD T51 1 T51 NBS N1 N 1 1 N N N N N N -19.241 19.057 -26.858 10.334 0.781 -1.278 NBS T51 2 T51 OAE O2 O -1 1 N N N N N N -18.451 19.126 -27.963 11.136 0.294 -2.055 OAE T51 3 T51 CBM C1 C 0 1 Y N N N N N -20.264 19.936 -26.714 8.891 0.484 -1.420 CBM T51 4 T51 CAU C2 C 0 1 Y N N N N N -20.768 20.099 -25.473 7.985 1.031 -0.536 CAU T51 5 T51 CAT C3 C 0 1 Y N N N N N -20.765 20.614 -27.768 8.454 -0.338 -2.444 CAT T51 6 T51 CAP C4 C 0 1 Y N N N N N -21.807 21.473 -27.548 7.107 -0.621 -2.584 CAP T51 7 T51 CBI C5 C 0 1 Y N N N N N -22.323 21.646 -26.301 6.190 -0.085 -1.703 CBI T51 8 T51 CBP C6 C 0 1 Y N N N N N -21.795 20.958 -25.248 6.625 0.749 -0.671 CBP T51 9 T51 CBG C7 C 0 1 N N N N N N -22.244 21.042 -23.838 5.648 1.332 0.273 CBG T51 10 T51 OAC O3 O 0 1 N N N N N N -22.577 20.039 -23.327 6.029 2.059 1.170 OAC T51 11 T51 NBD N2 N 0 1 N N N N N N -22.205 22.173 -23.198 4.335 1.059 0.139 NBD T51 12 T51 CBN C8 C 0 1 Y N N N N N -22.391 22.328 -21.899 3.421 1.534 1.087 CBN T51 13 T51 CAO C9 C 0 1 Y N N N N N -21.725 21.591 -20.978 3.623 2.766 1.692 CAO T51 14 T51 CAI C10 C 0 1 Y N N N N N -21.946 21.800 -19.643 2.719 3.233 2.627 CAI T51 15 T51 CAJ C11 C 0 1 Y N N N N N -22.818 22.762 -19.236 1.612 2.475 2.962 CAJ T51 16 T51 CAQ C12 C 0 1 Y N N N N N -23.469 23.512 -20.177 1.404 1.247 2.364 CAQ T51 17 T51 CBO C13 C 0 1 Y N N N N N -23.238 23.291 -21.503 2.302 0.774 1.421 CBO T51 18 T51 OBE O4 O 0 1 N N N N N N -23.846 24.002 -22.474 2.096 -0.432 0.828 OBE T51 19 T51 CBA C14 C 0 1 N N N N N N -24.821 24.988 -22.239 0.928 -1.157 1.219 CBA T51 20 T51 CBL C15 C 0 1 Y N N N N N -25.125 25.679 -23.528 0.867 -2.458 0.463 CBL T51 21 T51 CAL C16 C 0 1 Y N N N N N -26.052 25.151 -24.392 1.860 -2.778 -0.445 CAL T51 22 T51 CAH C17 C 0 1 Y N N N N N -26.351 25.758 -25.589 1.804 -3.972 -1.139 CAH T51 23 T51 CAG C18 C 0 1 Y N N N N N -25.716 26.927 -25.911 0.755 -4.846 -0.926 CAG T51 24 T51 CAK C19 C 0 1 Y N N N N N -24.794 27.456 -25.045 -0.238 -4.528 -0.018 CAK T51 25 T51 CBK C20 C 0 1 Y N N N N N -24.487 26.836 -23.852 -0.179 -3.336 0.680 CBK T51 26 T51 CAZ C21 C 0 1 N N N N N N -23.484 27.423 -22.900 -1.261 -2.989 1.670 CAZ T51 27 T51 NBC N3 N 0 1 N N N N N N -22.764 28.482 -23.538 -2.206 -2.055 1.052 NBC T51 28 T51 CBF C22 C 0 1 N N N N N N -22.869 29.734 -23.177 -3.263 -1.603 1.755 CBF T51 29 T51 OAB O5 O 0 1 N N N N N N -23.742 30.078 -22.466 -3.433 -1.970 2.902 OAB T51 30 T51 CBJ C23 C 0 1 Y N N N N N -21.904 30.772 -23.609 -4.217 -0.661 1.132 CBJ T51 31 T51 CAS C24 C 0 1 Y N N N N N -22.279 32.084 -23.669 -5.313 -0.191 1.857 CAS T51 32 T51 CAN C25 C 0 1 Y N N N N N -21.386 33.056 -24.067 -6.199 0.688 1.269 CAN T51 33 T51 CAR C26 C 0 1 Y N N N N N -20.619 30.439 -23.955 -4.022 -0.234 -0.183 CAR T51 34 T51 CAM C27 C 0 1 Y N N N N N -19.727 31.403 -24.354 -4.916 0.646 -0.758 CAM T51 35 T51 CBH C28 C 0 1 Y N N N N N -20.102 32.718 -24.410 -6.004 1.104 -0.036 CBH T51 36 T51 CBB C29 C 0 1 N N N N N N -19.111 33.766 -24.846 -6.975 2.064 -0.671 CBB T51 37 T51 NBR N4 N 0 1 N N N N N N -18.270 34.175 -23.711 -8.045 1.310 -1.337 NBR T51 38 T51 CAX C30 C 0 1 N N N N N N -16.977 34.688 -24.169 -8.866 0.584 -0.358 CAX T51 39 T51 CAV C31 C 0 1 N N N N N N -16.086 34.991 -22.965 -9.917 -0.250 -1.095 CAV T51 40 T51 NBQ N5 N 0 1 N N N N N N -16.741 35.934 -22.034 -10.749 0.635 -1.922 NBQ T51 41 T51 CAA C32 C 0 1 N N N N N N -16.753 37.305 -22.568 -11.518 1.566 -1.087 CAA T51 42 T51 CAW C33 C 0 1 N N N N N N -18.099 35.506 -21.675 -9.928 1.361 -2.901 CAW T51 43 T51 CAY C34 C 0 1 N N N N N N -18.928 35.216 -22.915 -8.877 2.195 -2.164 CAY T51 44 T51 H1 H1 H 0 1 N N N N N N -20.350 19.540 -24.649 8.328 1.675 0.260 H1 T51 45 T51 H2 H2 H 0 1 N N N N N N -20.355 20.482 -28.758 9.167 -0.760 -3.137 H2 T51 46 T51 H3 H3 H 0 1 N N N N N N -22.227 22.023 -28.378 6.772 -1.264 -3.385 H3 T51 47 T51 H4 H4 H 0 1 N N N N N N -23.148 22.326 -26.145 5.139 -0.306 -1.814 H4 T51 48 T51 H5 H5 H 0 1 N N N N N N -22.018 22.996 -23.735 4.024 0.532 -0.614 H5 T51 49 T51 H6 H6 H 0 1 N N N N N N -21.019 20.838 -21.297 4.487 3.360 1.433 H6 T51 50 T51 H7 H7 H 0 1 N N N N N N -21.427 21.199 -18.911 2.878 4.192 3.097 H7 T51 51 T51 H8 H8 H 0 1 N N N N N N -22.994 22.931 -18.184 0.909 2.844 3.694 H8 T51 52 T51 H9 H9 H 0 1 N N N N N N -24.165 24.278 -19.870 0.538 0.657 2.628 H9 T51 53 T51 H10 H10 H 0 1 N N N N N N -24.441 25.718 -21.509 0.968 -1.360 2.289 H10 T51 54 T51 H11 H11 H 0 1 N N N N N N -25.735 24.518 -21.846 0.041 -0.564 0.995 H11 T51 55 T51 H12 H12 H 0 1 N N N N N N -26.559 24.236 -24.125 2.679 -2.094 -0.611 H12 T51 56 T51 H13 H13 H 0 1 N N N N N N -27.073 25.321 -26.262 2.579 -4.221 -1.848 H13 T51 57 T51 H14 H14 H 0 1 N N N N N N -25.940 27.429 -26.841 0.711 -5.779 -1.469 H14 T51 58 T51 H15 H15 H 0 1 N N N N N N -24.297 28.379 -25.303 -1.057 -5.211 0.148 H15 T51 59 T51 H16 H16 H 0 1 N N N N N N -24.008 27.819 -22.018 -1.787 -3.896 1.966 H16 T51 60 T51 H17 H17 H 0 1 N N N N N N -22.778 26.640 -22.586 -0.813 -2.524 2.549 H17 T51 61 T51 H18 H18 H 0 1 N N N N N N -22.152 28.254 -24.295 -2.071 -1.763 0.137 H18 T51 62 T51 H19 H19 H 0 1 N N N N N N -23.287 32.363 -23.401 -5.468 -0.515 2.875 H19 T51 63 T51 H20 H20 H 0 1 N N N N N N -21.699 34.089 -24.109 -7.048 1.053 1.829 H20 T51 64 T51 H21 H21 H 0 1 N N N N N N -20.306 29.406 -23.913 -3.174 -0.590 -0.748 H21 T51 65 T51 H22 H22 H 0 1 N N N N N N -18.721 31.121 -24.626 -4.766 0.978 -1.775 H22 T51 66 T51 H23 H23 H 0 1 N N N N N N -18.472 33.353 -25.641 -7.407 2.706 0.098 H23 T51 67 T51 H24 H24 H 0 1 N N N N N N -19.654 34.642 -25.230 -6.452 2.678 -1.404 H24 T51 68 T51 H26 H26 H 0 1 N N N N N N -16.489 33.934 -24.804 -8.229 -0.074 0.234 H26 T51 69 T51 H27 H27 H 0 1 N N N N N N -17.134 35.610 -24.749 -9.364 1.297 0.300 H27 T51 70 T51 H28 H28 H 0 1 N N N N N N -15.872 34.052 -22.433 -9.419 -0.981 -1.732 H28 T51 71 T51 H29 H29 H 0 1 N N N N N N -15.144 35.434 -23.319 -10.545 -0.767 -0.370 H29 T51 72 T51 H31 H31 H 0 1 N N N N N N -17.247 37.975 -21.849 -10.834 2.178 -0.499 H31 T51 73 T51 H32 H32 H 0 1 N N N N N N -15.719 37.643 -22.733 -12.125 2.210 -1.724 H32 T51 74 T51 H33 H33 H 0 1 N N N N N N -17.301 37.322 -23.521 -12.167 1.002 -0.417 H33 T51 75 T51 H34 H34 H 0 1 N N N N N N -18.586 36.305 -21.096 -9.430 0.648 -3.559 H34 T51 76 T51 H35 H35 H 0 1 N N N N N N -18.038 34.594 -21.063 -10.565 2.019 -3.493 H35 T51 77 T51 H36 H36 H 0 1 N N N N N N -19.022 36.133 -23.516 -9.375 2.926 -1.527 H36 T51 78 T51 H37 H37 H 0 1 N N N N N N -19.928 34.871 -22.615 -8.249 2.712 -2.889 H37 T51 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T51 OAE NBS SING N N 1 T51 CAT CAP DOUB Y N 2 T51 CAT CBM SING Y N 3 T51 CAP CBI SING Y N 4 T51 NBS CBM SING N N 5 T51 NBS OAD DOUB N N 6 T51 CBM CAU DOUB Y N 7 T51 CBI CBP DOUB Y N 8 T51 CAG CAH DOUB Y N 9 T51 CAG CAK SING Y N 10 T51 CAH CAL SING Y N 11 T51 CAU CBP SING Y N 12 T51 CBP CBG SING N N 13 T51 CAK CBK DOUB Y N 14 T51 CBB CBH SING N N 15 T51 CBB NBR SING N N 16 T51 CBH CAM DOUB Y N 17 T51 CBH CAN SING Y N 18 T51 CAL CBL DOUB Y N 19 T51 CAM CAR SING Y N 20 T51 CAX NBR SING N N 21 T51 CAX CAV SING N N 22 T51 CAN CAS DOUB Y N 23 T51 CAR CBJ DOUB Y N 24 T51 CBK CBL SING Y N 25 T51 CBK CAZ SING N N 26 T51 CBG OAC DOUB N N 27 T51 CBG NBD SING N N 28 T51 NBR CAY SING N N 29 T51 CAS CBJ SING Y N 30 T51 CBJ CBF SING N N 31 T51 NBC CBF SING N N 32 T51 NBC CAZ SING N N 33 T51 CBL CBA SING N N 34 T51 NBD CBN SING N N 35 T51 CBF OAB DOUB N N 36 T51 CAV NBQ SING N N 37 T51 CAY CAW SING N N 38 T51 CAA NBQ SING N N 39 T51 OBE CBA SING N N 40 T51 OBE CBO SING N N 41 T51 NBQ CAW SING N N 42 T51 CBN CBO DOUB Y N 43 T51 CBN CAO SING Y N 44 T51 CBO CAQ SING Y N 45 T51 CAO CAI DOUB Y N 46 T51 CAQ CAJ DOUB Y N 47 T51 CAI CAJ SING Y N 48 T51 CAU H1 SING N N 49 T51 CAT H2 SING N N 50 T51 CAP H3 SING N N 51 T51 CBI H4 SING N N 52 T51 NBD H5 SING N N 53 T51 CAO H6 SING N N 54 T51 CAI H7 SING N N 55 T51 CAJ H8 SING N N 56 T51 CAQ H9 SING N N 57 T51 CBA H10 SING N N 58 T51 CBA H11 SING N N 59 T51 CAL H12 SING N N 60 T51 CAH H13 SING N N 61 T51 CAG H14 SING N N 62 T51 CAK H15 SING N N 63 T51 CAZ H16 SING N N 64 T51 CAZ H17 SING N N 65 T51 NBC H18 SING N N 66 T51 CAS H19 SING N N 67 T51 CAN H20 SING N N 68 T51 CAR H21 SING N N 69 T51 CAM H22 SING N N 70 T51 CBB H23 SING N N 71 T51 CBB H24 SING N N 72 T51 CAX H26 SING N N 73 T51 CAX H27 SING N N 74 T51 CAV H28 SING N N 75 T51 CAV H29 SING N N 76 T51 CAA H31 SING N N 77 T51 CAA H32 SING N N 78 T51 CAA H33 SING N N 79 T51 CAW H34 SING N N 80 T51 CAW H35 SING N N 81 T51 CAY H36 SING N N 82 T51 CAY H37 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T51 SMILES ACDLabs 12.01 "O=[N+](c1cc(ccc1)C(=O)Nc2c(cccc2)OCc3ccccc3CNC(=O)c4ccc(cc4)CN5CCN(CC5)C)[O-]" T51 InChI InChI 1.03 "InChI=1S/C34H35N5O5/c1-37-17-19-38(20-18-37)23-25-13-15-26(16-14-25)33(40)35-22-28-7-2-3-8-29(28)24-44-32-12-5-4-11-31(32)36-34(41)27-9-6-10-30(21-27)39(42)43/h2-16,21H,17-20,22-24H2,1H3,(H,35,40)(H,36,41)" T51 InChIKey InChI 1.03 VZOUZIPPEQZPII-UHFFFAOYSA-N T51 SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3ccccc3COc4ccccc4NC(=O)c5cccc(c5)[N+]([O-])=O" T51 SMILES CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3ccccc3COc4ccccc4NC(=O)c5cccc(c5)[N+]([O-])=O" T51 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3ccccc3COc4ccccc4NC(=O)c5cccc(c5)[N+](=O)[O-]" T51 SMILES "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3ccccc3COc4ccccc4NC(=O)c5cccc(c5)[N+](=O)[O-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier T51 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[2-({2-[({4-[(4-methylpiperazin-1-yl)methyl]benzoyl}amino)methyl]benzyl}oxy)phenyl]-3-nitrobenzamide" T51 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[2-[[2-[[[4-[(4-methylpiperazin-1-yl)methyl]phenyl]carbonylamino]methyl]phenyl]methoxy]phenyl]-3-nitro-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T51 "Create component" 2015-09-30 PDBJ T51 "Initial release" 2016-09-21 RCSB T51 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id T51 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CBI _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #