data_T53 # _chem_comp.id T53 _chem_comp.name "N-[2-({3-[({4-[(4-methylpiperazin-1-yl)methyl]benzoyl}amino)methyl]benzyl}oxy)phenyl]-3-nitrobenzamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H35 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-09-30 _chem_comp.pdbx_modified_date 2016-09-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 593.672 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T53 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DVC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T53 OAD O1 O 0 1 N N N 17.825 18.697 28.086 9.881 -4.412 0.193 OAD T53 1 T53 NBR N1 N 1 1 N N N 18.543 18.772 26.930 9.546 -3.336 0.654 NBR T53 2 T53 OAE O2 O -1 1 N N N 18.167 17.998 25.868 10.076 -2.915 1.667 OAE T53 3 T53 CBM C1 C 0 1 Y N N 19.616 19.619 26.806 8.498 -2.536 -0.020 CBM T53 4 T53 CAU C2 C 0 1 Y N N 20.200 19.758 25.582 8.124 -1.314 0.501 CAU T53 5 T53 CAM C3 C 0 1 Y N N 20.091 20.314 27.873 7.901 -3.012 -1.173 CAM T53 6 T53 CAI C4 C 0 1 Y N N 21.155 21.163 27.723 6.921 -2.271 -1.809 CAI T53 7 T53 CAL C5 C 0 1 Y N N 21.760 21.305 26.509 6.534 -1.050 -1.297 CAL T53 8 T53 CBL C6 C 0 1 Y N N 21.264 20.608 25.410 7.136 -0.561 -0.136 CBL T53 9 T53 CBG C7 C 0 1 N N N 21.797 20.686 24.022 6.729 0.748 0.417 CBG T53 10 T53 OAC O3 O 0 1 N N N 22.209 19.705 23.539 7.255 1.171 1.428 OAC T53 11 T53 NBD N2 N 0 1 N N N 21.766 21.800 23.348 5.775 1.473 -0.201 NBD T53 12 T53 CBN C8 C 0 1 Y N N 21.991 21.945 22.043 5.323 2.668 0.372 CBN T53 13 T53 CAP C9 C 0 1 Y N N 21.287 21.265 21.092 6.203 3.480 1.073 CAP T53 14 T53 CAF C10 C 0 1 Y N N 21.566 21.479 19.763 5.755 4.659 1.637 CAF T53 15 T53 CAG C11 C 0 1 Y N N 22.515 22.375 19.371 4.431 5.033 1.506 CAG T53 16 T53 CAS C12 C 0 1 Y N N 23.206 23.059 20.321 3.547 4.229 0.809 CAS T53 17 T53 CBO C13 C 0 1 Y N N 22.928 22.844 21.642 3.990 3.048 0.235 CBO T53 18 T53 OBE O4 O 0 1 N N N 23.587 23.508 22.593 3.122 2.257 -0.450 OBE T53 19 T53 CBA C14 C 0 1 N N N 24.271 24.706 22.387 1.768 2.704 -0.540 CBA T53 20 T53 CBJ C15 C 0 1 Y N N 24.842 25.047 23.714 0.961 1.707 -1.330 CBJ T53 21 T53 CAT C16 C 0 1 Y N N 24.576 26.246 24.313 0.330 0.661 -0.683 CAT T53 22 T53 CAK C17 C 0 1 Y N N 25.626 24.130 24.347 0.848 1.840 -2.702 CAK T53 23 T53 CAH C18 C 0 1 Y N N 26.160 24.412 25.575 0.107 0.925 -3.427 CAH T53 24 T53 CAJ C19 C 0 1 Y N N 25.900 25.614 26.175 -0.519 -0.124 -2.780 CAJ T53 25 T53 CBH C20 C 0 1 Y N N 25.106 26.534 25.544 -0.411 -0.254 -1.408 CBH T53 26 T53 CAV C21 C 0 1 N N N 24.838 27.834 26.231 -1.099 -1.395 -0.703 CAV T53 27 T53 NBC N3 N 0 1 N N N 23.998 28.658 25.436 -2.449 -0.983 -0.310 NBC T53 28 T53 CBF C22 C 0 1 N N N 23.743 29.886 25.771 -3.254 -1.846 0.339 CBF T53 29 T53 OAB O5 O 0 1 N N N 24.256 30.430 26.700 -2.861 -2.966 0.599 OAB T53 30 T53 CBK C23 C 0 1 Y N N 22.780 30.647 24.959 -4.617 -1.430 0.736 CBK T53 31 T53 CAR C24 C 0 1 Y N N 22.624 32.006 25.121 -5.454 -2.322 1.408 CAR T53 32 T53 CAO C25 C 0 1 Y N N 21.711 32.671 24.338 -6.724 -1.927 1.776 CAO T53 33 T53 CAQ C26 C 0 1 Y N N 22.046 29.949 24.044 -5.069 -0.142 0.444 CAQ T53 34 T53 CAN C27 C 0 1 Y N N 21.149 30.608 23.267 -6.339 0.241 0.822 CAN T53 35 T53 CBI C28 C 0 1 Y N N 20.983 31.958 23.412 -7.168 -0.651 1.479 CBI T53 36 T53 CBB C29 C 0 1 N N N 19.971 32.582 22.510 -8.554 -0.225 1.888 CBB T53 37 T53 NBQ N4 N 0 1 N N N 19.719 33.938 22.923 -9.499 -0.524 0.804 NBQ T53 38 T53 CAY C30 C 0 1 N N N 20.733 34.764 22.265 -10.888 -0.345 1.250 CAY T53 39 T53 CAW C31 C 0 1 N N N 20.544 34.760 20.761 -11.840 -0.742 0.120 CAW T53 40 T53 NBP N5 N 0 1 N N N 19.206 35.296 20.509 -11.560 0.082 -1.064 NBP T53 41 T53 CAA C32 C 0 1 N N N 19.048 35.505 19.067 -11.850 1.498 -0.801 CAA T53 42 T53 CAX C33 C 0 1 N N N 18.219 34.333 21.007 -10.171 -0.097 -1.511 CAX T53 43 T53 CAZ C34 C 0 1 N N N 18.357 34.287 22.520 -9.219 0.300 -0.380 CAZ T53 44 T53 H1 H1 H 0 1 N N N 19.823 19.195 24.741 8.593 -0.942 1.399 H1 T53 45 T53 H2 H2 H 0 1 N N N 19.628 20.196 28.842 8.201 -3.967 -1.579 H2 T53 46 T53 H3 H3 H 0 1 N N N 21.517 21.724 28.572 6.458 -2.648 -2.709 H3 T53 47 T53 H4 H4 H 0 1 N N N 22.617 21.953 26.401 5.769 -0.472 -1.794 H4 T53 48 T53 H5 H5 H 0 1 N N N 21.552 22.631 23.862 5.402 1.167 -1.042 H5 T53 49 T53 H6 H6 H 0 1 N N N 20.517 20.565 21.381 7.238 3.190 1.178 H6 T53 50 T53 H7 H7 H 0 1 N N N 21.021 20.925 19.013 6.441 5.291 2.183 H7 T53 51 T53 H8 H8 H 0 1 N N N 22.715 22.539 18.322 4.085 5.955 1.949 H8 T53 52 T53 H9 H9 H 0 1 N N N 23.969 23.767 20.034 2.513 4.524 0.708 H9 T53 53 T53 H10 H10 H 0 1 N N N 25.070 24.573 21.643 1.349 2.798 0.462 H10 T53 54 T53 H11 H11 H 0 1 N N N 23.581 25.493 22.048 1.738 3.673 -1.039 H11 T53 55 T53 H12 H12 H 0 1 N N N 23.946 26.969 23.815 0.415 0.559 0.388 H12 T53 56 T53 H13 H13 H 0 1 N N N 25.827 23.178 23.878 1.337 2.660 -3.207 H13 T53 57 T53 H14 H14 H 0 1 N N N 26.787 23.686 26.071 0.018 1.030 -4.498 H14 T53 58 T53 H15 H15 H 0 1 N N N 26.320 25.837 27.145 -1.098 -0.839 -3.346 H15 T53 59 T53 H16 H16 H 0 1 N N N 25.792 28.353 26.406 -1.161 -2.252 -1.373 H16 T53 60 T53 H17 H17 H 0 1 N N N 24.345 27.638 27.194 -0.530 -1.669 0.185 H17 T53 61 T53 H18 H18 H 0 1 N N N 23.595 28.285 24.601 -2.762 -0.089 -0.518 H18 T53 62 T53 H19 H19 H 0 1 N N N 23.211 32.541 25.853 -5.108 -3.318 1.640 H19 T53 63 T53 H20 H20 H 0 1 N N N 21.567 33.736 24.447 -7.372 -2.616 2.296 H20 T53 64 T53 H21 H21 H 0 1 N N N 22.178 28.882 23.939 -4.426 0.553 -0.076 H21 T53 65 T53 H22 H22 H 0 1 N N N 20.567 30.067 22.535 -6.692 1.236 0.593 H22 T53 66 T53 H23 H23 H 0 1 N N N 19.035 32.006 22.558 -8.850 -0.766 2.787 H23 T53 67 T53 H24 H24 H 0 1 N N N 20.351 32.579 21.478 -8.561 0.846 2.091 H24 T53 68 T53 H26 H26 H 0 1 N N N 21.731 34.367 22.503 -11.074 -0.975 2.121 H26 T53 69 T53 H27 H27 H 0 1 N N N 20.651 35.797 22.635 -11.052 0.699 1.515 H27 T53 70 T53 H28 H28 H 0 1 N N N 20.622 33.734 20.371 -11.694 -1.794 -0.126 H28 T53 71 T53 H29 H29 H 0 1 N N N 21.304 35.394 20.281 -12.870 -0.583 0.439 H29 T53 72 T53 H31 H31 H 0 1 N N N 18.045 35.908 18.862 -11.229 1.849 0.023 H31 T53 73 T53 H32 H32 H 0 1 N N N 19.809 36.217 18.714 -11.634 2.085 -1.694 H32 T53 74 T53 H33 H33 H 0 1 N N N 19.172 34.546 18.542 -12.901 1.611 -0.537 H33 T53 75 T53 H34 H34 H 0 1 N N N 17.205 34.657 20.731 -10.006 -1.142 -1.776 H34 T53 76 T53 H35 H35 H 0 1 N N N 18.415 33.338 20.581 -9.985 0.533 -2.381 H35 T53 77 T53 H36 H36 H 0 1 N N N 18.104 35.275 22.932 -9.365 1.352 -0.134 H36 T53 78 T53 H37 H37 H 0 1 N N N 17.662 33.534 22.920 -8.189 0.140 -0.700 H37 T53 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T53 CAA NBP SING N N 1 T53 CAG CAF DOUB Y N 2 T53 CAG CAS SING Y N 3 T53 CAF CAP SING Y N 4 T53 CAS CBO DOUB Y N 5 T53 NBP CAW SING N N 6 T53 NBP CAX SING N N 7 T53 CAW CAY SING N N 8 T53 CAX CAZ SING N N 9 T53 CAP CBN DOUB Y N 10 T53 CBO CBN SING Y N 11 T53 CBO OBE SING N N 12 T53 CBN NBD SING N N 13 T53 CAY NBQ SING N N 14 T53 CBA OBE SING N N 15 T53 CBA CBJ SING N N 16 T53 CBB NBQ SING N N 17 T53 CBB CBI SING N N 18 T53 CAZ NBQ SING N N 19 T53 CAN CBI DOUB Y N 20 T53 CAN CAQ SING Y N 21 T53 NBD CBG SING N N 22 T53 CBI CAO SING Y N 23 T53 OAC CBG DOUB N N 24 T53 CBJ CAT DOUB Y N 25 T53 CBJ CAK SING Y N 26 T53 CBG CBL SING N N 27 T53 CAQ CBK DOUB Y N 28 T53 CAT CBH SING Y N 29 T53 CAO CAR DOUB Y N 30 T53 CAK CAH DOUB Y N 31 T53 CBK CAR SING Y N 32 T53 CBK CBF SING N N 33 T53 CBL CAU DOUB Y N 34 T53 CBL CAL SING Y N 35 T53 NBC CBF SING N N 36 T53 NBC CAV SING N N 37 T53 CBH CAJ DOUB Y N 38 T53 CBH CAV SING N N 39 T53 CAH CAJ SING Y N 40 T53 CAU CBM SING Y N 41 T53 CBF OAB DOUB N N 42 T53 OAE NBR SING N N 43 T53 CAL CAI DOUB Y N 44 T53 CBM NBR SING N N 45 T53 CBM CAM DOUB Y N 46 T53 NBR OAD DOUB N N 47 T53 CAI CAM SING Y N 48 T53 CAU H1 SING N N 49 T53 CAM H2 SING N N 50 T53 CAI H3 SING N N 51 T53 CAL H4 SING N N 52 T53 NBD H5 SING N N 53 T53 CAP H6 SING N N 54 T53 CAF H7 SING N N 55 T53 CAG H8 SING N N 56 T53 CAS H9 SING N N 57 T53 CBA H10 SING N N 58 T53 CBA H11 SING N N 59 T53 CAT H12 SING N N 60 T53 CAK H13 SING N N 61 T53 CAH H14 SING N N 62 T53 CAJ H15 SING N N 63 T53 CAV H16 SING N N 64 T53 CAV H17 SING N N 65 T53 NBC H18 SING N N 66 T53 CAR H19 SING N N 67 T53 CAO H20 SING N N 68 T53 CAQ H21 SING N N 69 T53 CAN H22 SING N N 70 T53 CBB H23 SING N N 71 T53 CBB H24 SING N N 72 T53 CAY H26 SING N N 73 T53 CAY H27 SING N N 74 T53 CAW H28 SING N N 75 T53 CAW H29 SING N N 76 T53 CAA H31 SING N N 77 T53 CAA H32 SING N N 78 T53 CAA H33 SING N N 79 T53 CAX H34 SING N N 80 T53 CAX H35 SING N N 81 T53 CAZ H36 SING N N 82 T53 CAZ H37 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T53 SMILES ACDLabs 12.01 "O=[N+]([O-])c1cccc(c1)C(=O)Nc2ccccc2OCc3cc(ccc3)CNC(=O)c4ccc(cc4)CN5CCN(CC5)C" T53 InChI InChI 1.03 "InChI=1S/C34H35N5O5/c1-37-16-18-38(19-17-37)23-25-12-14-28(15-13-25)33(40)35-22-26-6-4-7-27(20-26)24-44-32-11-3-2-10-31(32)36-34(41)29-8-5-9-30(21-29)39(42)43/h2-15,20-21H,16-19,22-24H2,1H3,(H,35,40)(H,36,41)" T53 InChIKey InChI 1.03 SBYMRRQFPFQPFC-UHFFFAOYSA-N T53 SMILES_CANONICAL CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(COc4ccccc4NC(=O)c5cccc(c5)[N+]([O-])=O)c3" T53 SMILES CACTVS 3.385 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(COc4ccccc4NC(=O)c5cccc(c5)[N+]([O-])=O)c3" T53 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(c3)COc4ccccc4NC(=O)c5cccc(c5)[N+](=O)[O-]" T53 SMILES "OpenEye OEToolkits" 1.9.2 "CN1CCN(CC1)Cc2ccc(cc2)C(=O)NCc3cccc(c3)COc4ccccc4NC(=O)c5cccc(c5)[N+](=O)[O-]" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier T53 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[2-({3-[({4-[(4-methylpiperazin-1-yl)methyl]benzoyl}amino)methyl]benzyl}oxy)phenyl]-3-nitrobenzamide" T53 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[2-[[3-[[[4-[(4-methylpiperazin-1-yl)methyl]phenyl]carbonylamino]methyl]phenyl]methoxy]phenyl]-3-nitro-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T53 "Create component" 2015-09-30 PDBJ T53 "Initial release" 2016-09-21 RCSB #