data_T64 # _chem_comp.id T64 _chem_comp.name "(6-4)photoproduct" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C20 H28 N4 O15 P2" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ;[(2R,4S,5R,10S,11R,13R,18R,19S)-4,8,18-trihydroxy-18,24-dimethyl-8-oxido-15,17,22-trioxo-7,9,12,26-tetraoxa-1,14,16,21- tetraaza-8-phosphapentacyclo[18.2.2.1~2,5~.1~10,13~.0~14,19~]hexacosa-20,23-dien-11-yl]methyl dihydrogen phosphate ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-07-26 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 626.402 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T64 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3B19 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T64 OP3 OP3 O 0 1 N Y N -27.585 30.230 7.110 6.273 3.455 0.226 OP3 T64 1 T64 P P P 0 1 N N N -28.462 30.703 8.375 5.961 2.007 -0.405 P T64 2 T64 N1 N1 N 0 1 N N N -30.025 31.116 3.049 0.974 -2.014 0.262 N1 T64 3 T64 C2 C2 C 0 1 N N N -29.182 30.633 2.214 2.098 -2.609 -0.112 C2 T64 4 T64 O2 O2 O 0 1 N N N -27.999 31.047 2.139 3.056 -1.933 -0.442 O2 T64 5 T64 N3 N3 N 0 1 N N N -29.575 29.638 1.422 2.230 -3.951 -0.143 N3 T64 6 T64 C4 C4 C 0 1 N N N -30.433 28.768 1.971 1.186 -4.750 0.117 C4 T64 7 T64 O4 O4 O 0 1 N N N -30.263 27.566 1.866 1.371 -5.950 0.193 O4 T64 8 T64 C5 C5 C 0 1 N N R -31.754 29.342 2.437 -0.209 -4.220 0.309 C5 T64 9 T64 C6 C6 C 0 1 N N S -31.456 30.649 3.179 -0.230 -2.760 0.649 C6 T64 10 T64 PB PB P 0 1 N N N -32.221 36.102 5.480 -1.082 2.209 0.618 PB T64 11 T64 "C1'" "C1'" C 0 1 N N R -29.523 32.223 3.939 0.866 -0.549 0.336 "C1'" T64 12 T64 C1R C1R C 0 1 N N R -34.276 35.142 1.148 -4.284 0.746 -1.078 C1R T64 13 T64 N1T N1T N 0 1 N N N -33.632 33.957 1.736 -3.436 -0.408 -0.760 N1T T64 14 T64 "C2'" "C2'" C 0 1 N N N -30.270 33.577 3.859 0.737 -0.023 1.781 "C2'" T64 15 T64 C2R C2R C 0 1 N N N -35.212 35.895 2.104 -5.385 0.981 -0.026 C2R T64 16 T64 C2T C2T C 0 1 N N N -32.656 33.316 1.047 -3.531 -1.132 0.374 C2T T64 17 T64 O2T O2T O 0 1 N N N -32.306 33.663 -0.103 -4.555 -1.191 1.027 O2T T64 18 T64 "C3'" "C3'" C 0 1 N N S -34.643 37.303 2.291 -5.558 2.520 -0.092 "C3'" T64 19 T64 "O3'" "O3'" O 0 1 N N N -35.375 38.282 1.526 -6.491 2.873 -1.112 "O3'" T64 20 T64 C3R C3R C 0 1 N N S -30.753 33.848 5.286 1.260 1.425 1.671 C3R T64 21 T64 O3R O3R O 0 1 N N N -30.845 35.258 5.603 0.198 2.376 1.566 O3R T64 22 T64 N3T N3T N 0 1 N N N -32.023 32.254 1.585 -2.454 -1.813 0.802 N3T T64 23 T64 "C4'" "C4'" C 0 1 N N R -33.203 37.194 1.814 -4.147 3.009 -0.461 "C4'" T64 24 T64 "O4'" "O4'" O 0 1 N N N -29.481 31.876 5.335 1.982 0.135 -0.233 "O4'" T64 25 T64 O4P O4P O 0 1 N N N -31.921 37.523 5.892 -1.878 1.048 1.075 O4P T64 26 T64 C4R C4R C 0 1 N N R -29.725 33.061 6.106 2.123 1.418 0.400 C4R T64 27 T64 O4R O4R O 0 1 N N N -33.165 36.045 0.946 -3.465 1.930 -1.079 O4R T64 28 T64 C4T C4T C 0 1 N N N -32.323 31.787 2.810 -1.401 -2.037 0.020 C4T T64 29 T64 O4T O4T O 0 1 N N N -32.576 29.651 1.298 -0.975 -4.476 -0.873 O4T T64 30 T64 "C5'" "C5'" C 0 1 N N N -30.117 32.672 7.532 3.589 1.651 0.771 "C5'" T64 31 T64 "O5'" "O5'" O 0 1 N N N -29.827 31.280 7.721 4.371 1.759 -0.420 "O5'" T64 32 T64 C5A C5A C 0 1 N N N -32.486 28.343 3.339 -0.860 -5.001 1.466 C5A T64 33 T64 C5M C5M C 0 1 N N N -33.707 32.004 4.946 -0.420 -1.986 -2.336 C5M T64 34 T64 O5P O5P O 0 1 N N N -33.308 35.323 6.193 -0.592 1.944 -0.894 O5P T64 35 T64 C5R C5R C 0 1 N N N -32.206 37.122 2.979 -3.436 3.418 0.834 C5R T64 36 T64 O5R O5R O 0 1 N N N -32.567 36.087 3.903 -2.019 3.513 0.633 O5R T64 37 T64 C5T C5T C 0 1 N N N -33.311 32.445 3.557 -1.462 -1.624 -1.306 C5T T64 38 T64 C6T C6T C 0 1 N N N -33.953 33.540 2.980 -2.494 -0.803 -1.680 C6T T64 39 T64 OP1 OP1 O 0 1 N N N -28.065 31.599 9.538 6.528 1.945 -1.911 OP1 T64 40 T64 OP2 OP2 O 0 1 N N N -28.690 29.229 8.628 6.616 0.962 0.412 OP2 T64 41 T64 HOP3 HOP3 H 0 0 N N N -27.583 29.281 7.062 5.874 4.190 -0.259 HOP3 T64 42 T64 HN3 HN3 H 0 1 N N N -29.251 29.546 0.480 3.095 -4.341 -0.353 HN3 T64 43 T64 H6 H6 H 0 1 N N N -31.626 30.447 4.247 -0.341 -2.657 1.738 H6 T64 44 T64 "H1'" "H1'" H 0 1 N N N -28.489 32.429 3.624 -0.047 -0.264 -0.199 "H1'" T64 45 T64 H1R H1R H 0 1 N N N -34.791 34.901 0.206 -4.734 0.628 -2.050 H1R T64 46 T64 "H2'" "H2'" H 0 1 N N N -29.591 34.374 3.523 -0.298 -0.040 2.109 "H2'" T64 47 T64 "H2'A" "H2'A" H 0 0 N N N -31.124 33.507 3.169 1.370 -0.605 2.451 "H2'A" T64 48 T64 H2R H2R H 0 1 N N N -36.222 35.952 1.673 -6.311 0.479 -0.300 H2R T64 49 T64 H2RA H2RA H 0 0 N N N -35.256 35.376 3.073 -5.059 0.701 0.972 H2RA T64 50 T64 "H3'" "H3'" H 0 1 N N N -34.656 37.561 3.360 -5.863 2.912 0.872 "H3'" T64 51 T64 "HO3'" "HO3'" H 0 0 N Y N -34.996 39.142 1.665 -7.380 2.519 -0.971 "HO3'" T64 52 T64 H3R H3R H 0 1 N N N -31.738 33.376 5.416 1.898 1.652 2.542 H3R T64 53 T64 "H4'" "H4'" H 0 1 N N N -32.970 38.095 1.227 -4.221 3.872 -1.137 "H4'" T64 54 T64 H4R H4R H 0 1 N N N -28.802 33.658 6.157 1.786 2.200 -0.280 H4R T64 55 T64 HO4T HO4T H 0 0 N N N -33.404 30.011 1.593 -1.050 -5.414 -1.097 HO4T T64 56 T64 "H5'" "H5'" H 0 1 N N N -29.541 33.272 8.252 3.675 2.571 1.348 "H5'" T64 57 T64 "H5'A" "H5'A" H 0 0 N N N -31.192 32.851 7.683 3.950 0.813 1.368 "H5'A" T64 58 T64 H5A H5A H 0 1 N N N -33.442 28.777 3.667 -0.276 -4.859 2.375 H5A T64 59 T64 H5AA H5AA H 0 0 N N N -32.677 27.416 2.779 -1.875 -4.636 1.626 H5AA T64 60 T64 H5AB H5AB H 0 0 N N N -31.864 28.119 4.218 -0.892 -6.062 1.216 H5AB T64 61 T64 H5M H5M H 0 1 N N N -34.496 32.667 5.331 -0.700 -2.920 -2.823 H5M T64 62 T64 H5MA H5MA H 0 0 N N N -34.082 30.970 4.910 -0.354 -1.193 -3.080 H5MA T64 63 T64 H5MB H5MB H 0 0 N N N -32.831 32.053 5.610 0.547 -2.106 -1.847 H5MB T64 64 T64 HO5P HO5P H 0 0 N N N -33.699 35.868 6.866 -1.313 1.832 -1.528 HO5P T64 65 T64 H5R H5R H 0 1 N N N -31.202 36.914 2.581 -3.819 4.388 1.160 H5R T64 66 T64 H5RA H5RA H 0 0 N N N -32.199 38.088 3.506 -3.646 2.679 1.610 H5RA T64 67 T64 H6T H6T H 0 1 N N N -34.718 34.062 3.536 -2.570 -0.466 -2.702 H6T T64 68 T64 HOP1 HOP1 H 0 0 N N N -28.007 31.081 10.332 7.482 2.086 -1.978 HOP1 T64 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T64 OP3 P SING N N 1 T64 P "O5'" SING N N 2 T64 P OP1 SING N N 3 T64 P OP2 DOUB N N 4 T64 N1 C2 SING N N 5 T64 N1 C6 SING N N 6 T64 N1 "C1'" SING N N 7 T64 C2 O2 DOUB N N 8 T64 C2 N3 SING N N 9 T64 N3 C4 SING N N 10 T64 C4 O4 DOUB N N 11 T64 C4 C5 SING N N 12 T64 C5 C6 SING N N 13 T64 C5 O4T SING N N 14 T64 C5 C5A SING N N 15 T64 C6 C4T SING N N 16 T64 PB O3R SING N N 17 T64 PB O4P DOUB N N 18 T64 PB O5P SING N N 19 T64 PB O5R SING N N 20 T64 "C1'" "C2'" SING N N 21 T64 "C1'" "O4'" SING N N 22 T64 C1R N1T SING N N 23 T64 C1R C2R SING N N 24 T64 C1R O4R SING N N 25 T64 N1T C2T SING N N 26 T64 N1T C6T SING N N 27 T64 "C2'" C3R SING N N 28 T64 C2R "C3'" SING N N 29 T64 C2T O2T DOUB N N 30 T64 C2T N3T SING N N 31 T64 "C3'" "O3'" SING N N 32 T64 "C3'" "C4'" SING N N 33 T64 C3R O3R SING N N 34 T64 C3R C4R SING N N 35 T64 N3T C4T DOUB N N 36 T64 "C4'" O4R SING N N 37 T64 "C4'" C5R SING N N 38 T64 "O4'" C4R SING N N 39 T64 C4R "C5'" SING N N 40 T64 C4T C5T SING N N 41 T64 "C5'" "O5'" SING N N 42 T64 C5M C5T SING N N 43 T64 C5R O5R SING N N 44 T64 C5T C6T DOUB N N 45 T64 OP3 HOP3 SING N N 46 T64 N3 HN3 SING N N 47 T64 C6 H6 SING N N 48 T64 "C1'" "H1'" SING N N 49 T64 C1R H1R SING N N 50 T64 "C2'" "H2'" SING N N 51 T64 "C2'" "H2'A" SING N N 52 T64 C2R H2R SING N N 53 T64 C2R H2RA SING N N 54 T64 "C3'" "H3'" SING N N 55 T64 "O3'" "HO3'" SING N N 56 T64 C3R H3R SING N N 57 T64 "C4'" "H4'" SING N N 58 T64 C4R H4R SING N N 59 T64 O4T HO4T SING N N 60 T64 "C5'" "H5'" SING N N 61 T64 "C5'" "H5'A" SING N N 62 T64 C5A H5A SING N N 63 T64 C5A H5AA SING N N 64 T64 C5A H5AB SING N N 65 T64 C5M H5M SING N N 66 T64 C5M H5MA SING N N 67 T64 C5M H5MB SING N N 68 T64 O5P HO5P SING N N 69 T64 C5R H5R SING N N 70 T64 C5R H5RA SING N N 71 T64 C6T H6T SING N N 72 T64 OP1 HOP1 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T64 SMILES ACDLabs 12.01 "OP(OCC5C3CC(N1C(=O)NC(=O)C(C1C4=NC(N(C2CC(O)C(O2)COP(O3)(=O)O)C=C4C)=O)(O)C)O5)(O)=O" T64 InChI InChI 1.03 "InChI=1S/C20H28N4O15P2/c1-8-5-23-13-3-9(25)11(37-13)6-36-41(33,34)39-10-4-14(38-12(10)7-35-40(30,31)32)24-16(15(8)21-18(23)27)20(2,29)17(26)22-19(24)28/h5,9-14,16,25,29H,3-4,6-7H2,1-2H3,(H,33,34)(H,22,26,28)(H2,30,31,32)/t9-,10-,11+,12+,13+,14+,16-,20+/m0/s1" T64 InChIKey InChI 1.03 FMDCHCYHBVGOEO-IWBSTULPSA-N T64 SMILES_CANONICAL CACTVS 3.385 "P(=O)(OC[C@@H]1[C@H]2OP(OC[C@@H]3[C@H](C[C@H](N4C(N=C([C@H]5[C@@](C(NC(N5[C@H](O1)C2)=O)=O)(C)O)C(=C4)C)=O)O3)O)(=O)O)(O)O" T64 SMILES CACTVS 3.385 "CC1=C[N]2[CH]3C[CH](O)[CH](CO[P](O)(=O)O[CH]4C[CH](O[CH]4CO[P](O)(O)=O)N5[CH](C1=NC2=O)[C](C)(O)C(=O)NC5=O)O3" T64 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=CN2[C@H]3C[C@@H]([C@H](O3)COP(=O)(O[C@H]4C[C@H](N5[C@@H](C1=NC2=O)[C@@](C(=O)NC5=O)(C)O)O[C@@H]4COP(=O)(O)O)O)O" T64 SMILES "OpenEye OEToolkits" 1.7.6 "CC1=CN2C3CC(C(O3)COP(=O)(OC4CC(N5C(C1=NC2=O)C(C(=O)NC5=O)(C)O)OC4COP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id T64 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 12.01 _pdbx_chem_comp_identifier.identifier "[(2R,4S,5R,10S,11R,13R,18R,19S)-4,8,18-trihydroxy-18,24-dimethyl-8-oxido-15,17,22-trioxo-7,9,12,26-tetraoxa-1,14,16,21-tetraaza-8-phosphapentacyclo[18.2.2.1~2,5~.1~10,13~.0~14,19~]hexacosa-20,23-dien-11-yl]methyl dihydrogen phosphate (non-preferred name)" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T64 "Create component" 2011-07-26 PDBJ T64 "Other modification" 2015-03-11 PDBJ T64 "Initial release" 2015-12-02 RCSB T64 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id T64 _pdbx_chem_comp_synonyms.name "[(2R,4S,5R,10S,11R,13R,18R,19S)-4,8,18-trihydroxy-18,24-dimethyl-8-oxido-15,17,22-trioxo-7,9,12,26-tetraoxa-1,14,16,21-tetraaza-8-phosphapentacyclo[18.2.2.1~2,5~.1~10,13~.0~14,19~]hexacosa-20,23-dien-11-yl]methyl dihydrogen phosphate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##