data_T6F # _chem_comp.id T6F _chem_comp.name "2-C-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium-2-yl}-6-O-phosphono-D-glucitol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H32 N4 O16 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "D-FRUCTOSE-6-PHOSPHATE THIAMIN DIPHOSPHATE ADDUCT" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2007-10-26 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 685.450 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T6F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2R8P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T6F O2A O2A O 0 1 N N N 16.952 -16.940 5.140 -5.027 -2.905 -1.453 O2A T6F 1 T6F PA PA P 0 1 N N R 15.850 -17.675 4.438 -5.661 -1.871 -0.394 PA T6F 2 T6F O1A O1A O 0 1 N N N 15.915 -17.976 2.981 -6.059 -0.630 -1.095 O1A T6F 3 T6F O3A O3A O 0 1 N N N 15.431 -18.952 5.324 -6.954 -2.536 0.297 O3A T6F 4 T6F PB PB P 0 1 N N N 15.716 -20.531 5.172 -8.462 -2.820 -0.191 PB T6F 5 T6F O3B O3B O 0 1 N N N 16.995 -20.682 5.969 -9.290 -1.439 -0.203 O3B T6F 6 T6F O2B O2B O 0 1 N N N 15.830 -20.917 3.718 -8.439 -3.394 -1.555 O2B T6F 7 T6F O1B O1B O 0 1 N N N 14.587 -21.229 5.873 -9.165 -3.859 0.817 O1B T6F 8 T6F O7 O7 O 0 1 N N N 14.483 -16.834 4.487 -4.568 -1.523 0.735 O7 T6F 9 T6F C7 C7 C 0 1 N N N 13.562 -16.849 5.563 -3.351 -0.828 0.453 C7 T6F 10 T6F C6 C6 C 0 1 N N N 13.314 -15.392 5.865 -2.547 -0.663 1.744 C6 T6F 11 T6F C5 C5 C 0 1 Y N N 12.882 -15.229 7.298 -1.264 0.070 1.447 C5 T6F 12 T6F S1 S1 S 0 1 Y N N 13.503 -16.080 8.758 0.268 -0.668 0.987 S1 T6F 13 T6F C2 C2 C 0 1 Y N N 12.570 -15.049 9.947 0.994 0.877 0.892 C2 T6F 14 T6F CF2 CF2 C 0 1 N N S 12.039 -15.477 11.310 2.431 1.134 0.521 CF2 T6F 15 T6F OF2 OF2 O 0 1 N N N 11.812 -14.327 12.132 3.049 1.931 1.533 OF2 T6F 16 T6F CF1 CF1 C 0 1 N N N 13.127 -16.293 12.022 2.489 1.874 -0.817 CF1 T6F 17 T6F OF1 OF1 O 0 1 N N N 14.227 -15.483 12.506 1.821 1.103 -1.817 OF1 T6F 18 T6F CF3 CF3 C 0 1 N N S 10.697 -16.230 11.132 3.172 -0.199 0.398 CF3 T6F 19 T6F OF3 OF3 O 0 1 N N N 10.899 -17.569 10.644 2.632 -0.946 -0.694 OF3 T6F 20 T6F CF4 CF4 C 0 1 N N R 9.765 -16.311 12.361 4.659 0.064 0.150 CF4 T6F 21 T6F OF4 OF4 O 0 1 N N N 10.325 -17.175 13.364 4.824 0.701 -1.119 OF4 T6F 22 T6F CF5 CF5 C 0 1 N N R 8.376 -16.861 12.000 5.420 -1.262 0.158 CF5 T6F 23 T6F OF5 OF5 O 0 1 N N N 7.756 -16.119 10.936 5.255 -1.899 1.427 OF5 T6F 24 T6F CF6 CF6 C 0 1 N N N 7.413 -16.880 13.188 6.907 -0.999 -0.090 CF6 T6F 25 T6F OF6 OF6 O 0 1 N N N 6.159 -17.405 12.743 7.600 -2.244 -0.198 OF6 T6F 26 T6F PF PF P 0 1 N N N 4.809 -17.264 13.621 9.185 -2.345 -0.461 PF T6F 27 T6F OF8 OF8 O 0 1 N N N 3.748 -16.832 12.627 9.533 -1.584 -1.682 OF8 T6F 28 T6F OF7 OF7 O 0 1 N N N 5.165 -16.247 14.686 9.978 -1.731 0.798 OF7 T6F 29 T6F OF9 OF9 O 0 1 N N N 4.574 -18.665 14.159 9.599 -3.889 -0.655 OF9 T6F 30 T6F N3 N3 N 1 1 Y N N 12.251 -14.034 9.111 0.131 1.792 1.183 N3 T6F 31 T6F C4 C4 C 0 1 Y N N 12.240 -14.095 7.764 -1.090 1.394 1.479 C4 T6F 32 T6F CM4 CM4 C 0 1 N N N 11.473 -13.247 6.767 -2.197 2.354 1.830 CM4 T6F 33 T6F "C7," "C7," C 0 1 N N N 11.808 -12.773 9.686 0.492 3.212 1.178 "C7," T6F 34 T6F "C5," "C5," C 0 1 Y N N 12.875 -11.687 9.655 -0.378 3.948 0.193 "C5," T6F 35 T6F "C4," "C4," C 0 1 Y N N 14.086 -11.737 10.369 -1.365 4.833 0.632 "C4," T6F 36 T6F "N4," "N4," N 0 1 N N N 14.446 -12.782 11.172 -1.563 5.051 1.985 "N4," T6F 37 T6F "N3," "N3," N 0 1 Y N N 14.959 -10.700 10.257 -2.112 5.463 -0.271 "N3," T6F 38 T6F "C2," "C2," C 0 1 Y N N 14.657 -9.625 9.497 -1.926 5.258 -1.559 "C2," T6F 39 T6F CM2 CM2 C 0 1 N N N 15.613 -8.471 9.406 -2.793 5.992 -2.549 CM2 T6F 40 T6F "N1," "N1," N 0 1 Y N N 13.486 -9.561 8.819 -1.003 4.430 -2.005 "N1," T6F 41 T6F "C6," "C6," C 0 1 Y N N 12.602 -10.569 8.871 -0.217 3.769 -1.167 "C6," T6F 42 T6F HO2A HO2A H 0 0 N N N 17.666 -16.785 4.533 -4.743 -3.743 -1.063 HO2A T6F 43 T6F HO3B HO3B H 0 0 N N N 17.736 -20.714 5.376 -9.346 -1.007 0.660 HO3B T6F 44 T6F HO1B HO1B H 0 0 N N N 14.821 -21.376 6.782 -10.078 -4.077 0.584 HO1B T6F 45 T6F H71 1H7 H 0 1 N N N 12.630 -17.361 5.282 -2.767 -1.398 -0.269 H71 T6F 46 T6F H72 2H7 H 0 1 N N N 13.949 -17.396 6.436 -3.581 0.154 0.040 H72 T6F 47 T6F H61 1H6 H 0 1 N N N 14.241 -14.823 5.698 -3.132 -0.093 2.466 H61 T6F 48 T6F H62 2H6 H 0 1 N N N 12.520 -15.016 5.203 -2.317 -1.645 2.157 H62 T6F 49 T6F HOF2 HOF2 H 0 0 N N N 11.762 -14.593 13.043 3.049 1.523 2.410 HOF2 T6F 50 T6F HF11 1HF1 H 0 0 N N N 12.668 -16.800 12.884 1.999 2.843 -0.717 HF11 T6F 51 T6F HF12 2HF1 H 0 0 N N N 13.539 -17.001 11.288 3.529 2.022 -1.106 HF12 T6F 52 T6F HOF1 HOF1 H 0 0 N N N 14.828 -15.306 11.792 1.818 1.512 -2.693 HOF1 T6F 53 T6F HF3 HF3 H 0 1 N N N 10.180 -15.593 10.399 3.053 -0.767 1.321 HF3 T6F 54 T6F HOF3 HOF3 H 0 0 N N N 10.944 -17.557 9.695 2.823 -0.566 -1.562 HOF3 T6F 55 T6F HF4 HF4 H 0 1 N N N 9.664 -15.283 12.738 5.049 0.712 0.935 HF4 T6F 56 T6F HOF4 HOF4 H 0 0 N N N 10.449 -18.044 13.001 4.498 0.180 -1.865 HOF4 T6F 57 T6F HF5 HF5 H 0 1 N N N 8.565 -17.895 11.674 5.030 -1.910 -0.627 HF5 T6F 58 T6F HOF5 HOF5 H 0 0 N N N 7.619 -15.221 11.214 5.581 -1.378 2.174 HOF5 T6F 59 T6F HF61 1HF6 H 0 0 N N N 7.820 -17.515 13.989 7.026 -0.435 -1.015 HF61 T6F 60 T6F HF62 2HF6 H 0 0 N N N 7.278 -15.862 13.581 7.318 -0.425 0.741 HF62 T6F 61 T6F HOF7 HOF7 H 0 0 N N N 5.240 -16.682 15.527 9.798 -2.182 1.635 HOF7 T6F 62 T6F HOF9 HOF9 H 0 0 N N N 4.525 -19.279 13.435 10.543 -4.025 -0.818 HOF9 T6F 63 T6F HM41 1HM4 H 0 0 N N N 11.287 -12.252 7.197 -2.111 2.640 2.879 HM41 T6F 64 T6F HM42 2HM4 H 0 0 N N N 12.063 -13.143 5.844 -2.120 3.243 1.204 HM42 T6F 65 T6F HM43 3HM4 H 0 0 N N N 10.513 -13.731 6.536 -3.161 1.874 1.663 HM43 T6F 66 T6F "H7,1" "1H7," H 0 0 N N N 10.941 -12.419 9.110 0.345 3.628 2.174 "H7,1" T6F 67 T6F "H7,2" "2H7," H 0 0 N N N 11.565 -12.962 10.742 1.538 3.320 0.890 "H7,2" T6F 68 T6F "H4,1" "1H4," H 0 0 N N N 14.534 -13.612 10.621 -0.929 4.701 2.631 "H4,1" T6F 69 T6F "H4,2" "2H4," H 0 0 N N N 15.321 -12.579 11.611 -2.335 5.555 2.288 "H4,2" T6F 70 T6F HM21 1HM2 H 0 0 N N N 15.847 -8.107 10.417 -2.322 6.939 -2.813 HM21 T6F 71 T6F HM22 2HM2 H 0 0 N N N 16.539 -8.800 8.912 -2.914 5.384 -3.446 HM22 T6F 72 T6F HM23 3HM2 H 0 0 N N N 15.154 -7.660 8.822 -3.770 6.183 -2.106 HM23 T6F 73 T6F "H6," "H6," H 0 1 N N N 11.683 -10.514 8.307 0.537 3.093 -1.544 "H6," T6F 74 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T6F O1A PA DOUB N N 1 T6F O2B PB DOUB N N 2 T6F PA O7 SING N N 3 T6F PA O2A SING N N 4 T6F PA O3A SING N N 5 T6F O7 C7 SING N N 6 T6F PB O3A SING N N 7 T6F PB O1B SING N N 8 T6F PB O3B SING N N 9 T6F C7 C6 SING N N 10 T6F C6 C5 SING N N 11 T6F CM4 C4 SING N N 12 T6F C5 C4 DOUB Y N 13 T6F C5 S1 SING Y N 14 T6F C4 N3 SING Y N 15 T6F S1 C2 SING Y N 16 T6F "N1," "C6," DOUB Y N 17 T6F "N1," "C2," SING Y N 18 T6F "C6," "C5," SING Y N 19 T6F N3 "C7," SING N N 20 T6F N3 C2 DOUB Y N 21 T6F CM2 "C2," SING N N 22 T6F "C2," "N3," DOUB Y N 23 T6F "C5," "C7," SING N N 24 T6F "C5," "C4," DOUB Y N 25 T6F C2 CF2 SING N N 26 T6F "N3," "C4," SING Y N 27 T6F "C4," "N4," SING N N 28 T6F OF3 CF3 SING N N 29 T6F OF5 CF5 SING N N 30 T6F CF3 CF2 SING N N 31 T6F CF3 CF4 SING N N 32 T6F CF2 CF1 SING N N 33 T6F CF2 OF2 SING N N 34 T6F CF5 CF4 SING N N 35 T6F CF5 CF6 SING N N 36 T6F CF1 OF1 SING N N 37 T6F CF4 OF4 SING N N 38 T6F OF8 PF DOUB N N 39 T6F OF6 CF6 SING N N 40 T6F OF6 PF SING N N 41 T6F PF OF9 SING N N 42 T6F PF OF7 SING N N 43 T6F O2A HO2A SING N N 44 T6F O3B HO3B SING N N 45 T6F O1B HO1B SING N N 46 T6F C7 H71 SING N N 47 T6F C7 H72 SING N N 48 T6F C6 H61 SING N N 49 T6F C6 H62 SING N N 50 T6F OF2 HOF2 SING N N 51 T6F CF1 HF11 SING N N 52 T6F CF1 HF12 SING N N 53 T6F OF1 HOF1 SING N N 54 T6F CF3 HF3 SING N N 55 T6F OF3 HOF3 SING N N 56 T6F CF4 HF4 SING N N 57 T6F OF4 HOF4 SING N N 58 T6F CF5 HF5 SING N N 59 T6F OF5 HOF5 SING N N 60 T6F CF6 HF61 SING N N 61 T6F CF6 HF62 SING N N 62 T6F OF7 HOF7 SING N N 63 T6F OF9 HOF9 SING N N 64 T6F CM4 HM41 SING N N 65 T6F CM4 HM42 SING N N 66 T6F CM4 HM43 SING N N 67 T6F "C7," "H7,1" SING N N 68 T6F "C7," "H7,2" SING N N 69 T6F "N4," "H4,1" SING N N 70 T6F "N4," "H4,2" SING N N 71 T6F CM2 HM21 SING N N 72 T6F CM2 HM22 SING N N 73 T6F CM2 HM23 SING N N 74 T6F "C6," "H6," SING N N 75 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T6F SMILES ACDLabs 10.04 "O=P(O)(O)OCC(O)C(O)C(O)C(O)(c1sc(c([n+]1Cc2cnc(nc2N)C)C)CCOP(=O)(O)OP(=O)(O)O)CO" T6F SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(C[n+]2c(C)c(CCO[P@](O)(=O)O[P](O)(O)=O)sc2[C@](O)(CO)[C@@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)c(N)n1" T6F SMILES CACTVS 3.341 "Cc1ncc(C[n+]2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[C](O)(CO)[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)c(N)n1" T6F SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)[C@](CO)([C@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O)O)CCO[P@@](=O)(O)OP(=O)(O)O" T6F SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)C(CO)(C(C(C(COP(=O)(O)O)O)O)O)O)CCOP(=O)(O)OP(=O)(O)O" T6F InChI InChI 1.03 "InChI=1S/C18H31N4O16P3S/c1-9-13(3-4-36-41(34,35)38-40(31,32)33)42-17(22(9)6-11-5-20-10(2)21-16(11)19)18(27,8-23)15(26)14(25)12(24)7-37-39(28,29)30/h5,12,14-15,23-27H,3-4,6-8H2,1-2H3,(H6-,19,20,21,28,29,30,31,32,33,34,35)/p+1/t12-,14-,15+,18+/m1/s1" T6F InChIKey InChI 1.03 AJFWOWNNZFXSES-TXPWEPMLSA-O # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier T6F "SYSTEMATIC NAME" ACDLabs 10.04 "2-C-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3-thiazol-3-ium-2-yl}-6-O-phosphono-D-glucitol" T6F "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-[(2S,3S,4R,5R)-1,2,3,4,5-pentahydroxy-6-phosphonooxy-hexan-2-yl]-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T6F "Create component" 2007-10-26 RCSB T6F "Modify aromatic_flag" 2011-06-04 RCSB T6F "Modify descriptor" 2011-06-04 RCSB T6F "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id T6F _pdbx_chem_comp_synonyms.name "D-FRUCTOSE-6-PHOSPHATE THIAMIN DIPHOSPHATE ADDUCT" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##