data_T6K # _chem_comp.id T6K _chem_comp.name "(2R,3R,4R,6R)-3,4-dihydroxy-6-methyl-5-oxotetrahydro-2H-pyran-2-yl {(2R,3S,5R)-3-hydroxy-5-[(5R)-5-methyl-2,4-dioxotetrahydropyrimidin-1(2H)-yl]tetrahydrofuran-2-yl}methyl dihydrogen diphosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H26 N2 O15 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-03-18 _chem_comp.pdbx_modified_date 2015-03-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 548.330 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T6K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4YTJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T6K C01 C1 C 0 1 N N N 10.830 15.434 89.063 -6.680 -2.349 0.203 C01 T6K 1 T6K C02 C2 C 0 1 N N R 9.765 16.006 90.029 -5.831 -2.055 -1.015 C02 T6K 2 T6K C03 C3 C 0 1 N N N 9.447 14.950 91.038 -6.575 -1.091 -1.942 C03 T6K 3 T6K O04 O1 O 0 1 N N N 10.184 17.299 90.692 -4.607 -1.454 -0.578 O04 T6K 4 T6K C05 C4 C 0 1 N N R 10.661 18.231 89.700 -4.786 -0.285 0.222 C05 T6K 5 T6K O06 O2 O 0 1 N N N 9.755 18.215 88.644 -3.511 0.294 0.509 O06 T6K 6 T6K P07 P1 P 0 1 N N N 8.596 19.368 88.569 -2.819 1.401 -0.433 P07 T6K 7 T6K O08 O3 O 0 1 N N N 8.525 19.887 87.153 -2.723 0.881 -1.816 O08 T6K 8 T6K O09 O4 O 0 1 N N N 7.279 18.762 88.982 -3.706 2.744 -0.425 O09 T6K 9 T6K O10 O5 O 0 1 N N N 8.974 20.596 89.605 -1.343 1.729 0.120 O10 T6K 10 T6K P11 P2 P 0 1 N N N 9.730 21.989 89.144 -0.057 2.474 -0.499 P11 T6K 11 T6K O12 O6 O 0 1 N N N 10.858 21.666 88.197 0.096 2.096 -1.922 O12 T6K 12 T6K O13 O7 O 0 1 N N N 8.738 22.923 88.482 -0.254 4.068 -0.386 O13 T6K 13 T6K O14 O8 O 0 1 N N N 10.337 22.690 90.516 1.260 2.037 0.317 O14 T6K 14 T6K C15 C5 C 0 1 N N N 9.675 22.420 91.733 2.578 2.447 -0.055 C15 T6K 15 T6K C16 C6 C 0 1 N N R 9.928 23.440 92.628 3.592 1.858 0.927 C16 T6K 16 T6K O17 O9 O 0 1 N N N 11.474 23.499 92.976 3.638 0.420 0.809 O17 T6K 17 T6K C18 C7 C 0 1 N N R 11.903 24.671 92.622 4.902 -0.005 1.345 C18 T6K 18 T6K C19 C8 C 0 1 N N N 10.707 25.437 91.766 5.887 1.169 1.182 C19 T6K 19 T6K C20 C9 C 0 1 N N S 9.565 24.822 92.029 5.031 2.297 0.556 C20 T6K 20 T6K O21 O10 O 0 1 N N N 8.783 25.608 93.014 5.346 3.562 1.142 O21 T6K 21 T6K N22 N1 N 0 1 N N N 13.090 24.507 91.836 5.389 -1.173 0.606 N22 T6K 22 T6K C23 C10 C 0 1 N N N 13.241 23.312 91.045 5.754 -2.388 1.336 C23 T6K 23 T6K C24 C11 C 0 1 N N R 14.505 23.076 90.208 5.364 -3.617 0.511 C24 T6K 24 T6K C25 C12 C 0 1 N N N 14.037 22.674 88.722 3.844 -3.791 0.540 C25 T6K 25 T6K C26 C13 C 0 1 N N N 15.619 24.163 90.189 5.823 -3.424 -0.913 C26 T6K 26 T6K O27 O11 O 0 1 N N N 16.621 24.055 89.561 6.198 -4.376 -1.563 O27 T6K 27 T6K N28 N2 N 0 1 N N N 15.333 25.327 91.041 5.816 -2.196 -1.461 N28 T6K 28 T6K C29 C14 C 0 1 N N N 14.119 25.564 91.872 5.488 -1.115 -0.732 C29 T6K 29 T6K O30 O12 O 0 1 N N N 13.984 26.541 92.521 5.272 -0.062 -1.298 O30 T6K 30 T6K C31 C15 C 0 1 N N R 11.941 17.730 89.127 -5.482 -0.654 1.535 C31 T6K 31 T6K O32 O13 O 0 1 N N N 12.455 18.726 88.225 -4.698 -1.621 2.236 O32 T6K 32 T6K C33 C16 C 0 1 N N R 11.689 16.465 88.346 -6.864 -1.242 1.220 C33 T6K 33 T6K O34 O14 O 0 1 N N N 12.973 15.853 87.894 -7.710 -0.225 0.679 O34 T6K 34 T6K O35 O15 O 0 1 N N N 10.960 14.276 88.884 -7.197 -3.430 0.356 O35 T6K 35 T6K H1 H1 H 0 1 N N N 8.856 16.205 89.441 -5.615 -2.982 -1.546 H1 T6K 36 T6K H2 H2 H 0 1 N N N 8.690 15.329 91.740 -6.780 -0.162 -1.411 H2 T6K 37 T6K H3 H3 H 0 1 N N N 9.057 14.059 90.525 -5.961 -0.882 -2.818 H3 T6K 38 T6K H4 H4 H 0 1 N N N 10.360 14.685 91.591 -7.515 -1.544 -2.257 H4 T6K 39 T6K H5 H5 H 0 1 N N N 10.791 19.238 90.123 -5.397 0.436 -0.321 H5 T6K 40 T6K H6 H6 H 0 1 N N N 6.661 18.827 88.264 -3.812 3.141 0.450 H6 T6K 41 T6K H7 H7 H 0 1 N N N 9.027 23.119 87.599 -0.361 4.388 0.521 H7 T6K 42 T6K H8 H8 H 0 1 N N N 8.592 22.349 91.554 2.798 2.092 -1.062 H8 T6K 43 T6K H9 H9 H 0 1 N N N 10.041 21.469 92.147 2.640 3.535 -0.033 H9 T6K 44 T6K H10 H10 H 0 1 N N N 9.366 23.299 93.563 3.350 2.152 1.949 H10 T6K 45 T6K H11 H11 H 0 1 N N N 12.124 25.303 93.495 4.793 -0.254 2.400 H11 T6K 46 T6K H12 H12 H 0 1 N N N 10.923 25.381 90.689 6.275 1.479 2.152 H12 T6K 47 T6K H13 H13 H 0 1 N N N 10.644 26.491 92.073 6.703 0.893 0.514 H13 T6K 48 T6K H14 H14 H 0 1 N N N 8.963 24.665 91.122 5.161 2.329 -0.526 H14 T6K 49 T6K H15 H15 H 0 1 N N N 7.965 25.161 93.198 6.264 3.837 1.013 H15 T6K 50 T6K H16 H16 H 0 1 N N N 12.393 23.291 90.345 6.830 -2.396 1.513 H16 T6K 51 T6K H17 H17 H 0 1 N N N 13.163 22.464 91.741 5.229 -2.410 2.290 H17 T6K 52 T6K H18 H18 H 0 1 N N N 14.977 22.171 90.618 5.840 -4.503 0.930 H18 T6K 53 T6K H19 H19 H 0 1 N N N 13.252 21.906 88.780 3.369 -2.905 0.119 H19 T6K 54 T6K H20 H20 H 0 1 N N N 13.643 23.563 88.209 3.567 -4.666 -0.047 H20 T6K 55 T6K H21 H21 H 0 1 N N N 14.897 22.278 88.162 3.514 -3.925 1.570 H21 T6K 56 T6K H22 H22 H 0 1 N N N 16.033 26.041 91.065 6.050 -2.088 -2.396 H22 T6K 57 T6K H23 H23 H 0 1 N N N 12.660 17.530 89.935 -5.597 0.238 2.151 H23 T6K 58 T6K H24 H24 H 0 1 N N N 12.620 19.531 88.702 -5.080 -1.902 3.079 H24 T6K 59 T6K H25 H25 H 0 1 N N N 11.138 16.757 87.440 -7.308 -1.647 2.129 H25 T6K 60 T6K H26 H26 H 0 1 N N N 12.935 14.911 88.014 -8.593 -0.536 0.437 H26 T6K 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T6K O08 P07 DOUB N N 1 T6K O34 C33 SING N N 2 T6K O12 P11 DOUB N N 3 T6K O32 C31 SING N N 4 T6K C33 C01 SING N N 5 T6K C33 C31 SING N N 6 T6K O13 P11 SING N N 7 T6K P07 O06 SING N N 8 T6K P07 O09 SING N N 9 T6K P07 O10 SING N N 10 T6K O06 C05 SING N N 11 T6K C25 C24 SING N N 12 T6K O35 C01 DOUB N N 13 T6K C01 C02 SING N N 14 T6K C31 C05 SING N N 15 T6K P11 O10 SING N N 16 T6K P11 O14 SING N N 17 T6K O27 C26 DOUB N N 18 T6K C05 O04 SING N N 19 T6K C02 O04 SING N N 20 T6K C02 C03 SING N N 21 T6K C26 C24 SING N N 22 T6K C26 N28 SING N N 23 T6K C24 C23 SING N N 24 T6K O14 C15 SING N N 25 T6K N28 C29 SING N N 26 T6K C23 N22 SING N N 27 T6K C15 C16 SING N N 28 T6K C19 C20 SING N N 29 T6K C19 C18 SING N N 30 T6K N22 C29 SING N N 31 T6K N22 C18 SING N N 32 T6K C29 O30 DOUB N N 33 T6K C20 C16 SING N N 34 T6K C20 O21 SING N N 35 T6K C18 O17 SING N N 36 T6K C16 O17 SING N N 37 T6K C02 H1 SING N N 38 T6K C03 H2 SING N N 39 T6K C03 H3 SING N N 40 T6K C03 H4 SING N N 41 T6K C05 H5 SING N N 42 T6K O09 H6 SING N N 43 T6K O13 H7 SING N N 44 T6K C15 H8 SING N N 45 T6K C15 H9 SING N N 46 T6K C16 H10 SING N N 47 T6K C18 H11 SING N N 48 T6K C19 H12 SING N N 49 T6K C19 H13 SING N N 50 T6K C20 H14 SING N N 51 T6K O21 H15 SING N N 52 T6K C23 H16 SING N N 53 T6K C23 H17 SING N N 54 T6K C24 H18 SING N N 55 T6K C25 H19 SING N N 56 T6K C25 H20 SING N N 57 T6K C25 H21 SING N N 58 T6K N28 H22 SING N N 59 T6K C31 H23 SING N N 60 T6K O32 H24 SING N N 61 T6K C33 H25 SING N N 62 T6K O34 H26 SING N N 63 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T6K SMILES ACDLabs 12.01 "C3(C(OC(OP(O)(OP(OCC1OC(CC1O)N2C(NC(C(C2)C)=O)=O)(=O)O)=O)C(O)C3O)C)=O" T6K InChI InChI 1.03 "InChI=1S/C16H26N2O15P2/c1-6-4-18(16(24)17-14(6)23)10-3-8(19)9(31-10)5-29-34(25,26)33-35(27,28)32-15-13(22)12(21)11(20)7(2)30-15/h6-10,12-13,15,19,21-22H,3-5H2,1-2H3,(H,25,26)(H,27,28)(H,17,23,24)/t6-,7-,8+,9-,10-,12+,13-,15-/m1/s1" T6K InChIKey InChI 1.03 GOBYTWJNFOHSGZ-JXBWMLSMSA-N T6K SMILES_CANONICAL CACTVS 3.385 "C[C@@H]1CN([C@H]2C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[C@H]3O[C@H](C)C(=O)[C@H](O)[C@H]3O)O2)C(=O)NC1=O" T6K SMILES CACTVS 3.385 "C[CH]1CN([CH]2C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[CH]3O[CH](C)C(=O)[CH](O)[CH]3O)O2)C(=O)NC1=O" T6K SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C[C@@H]1CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@H](O2)COP(=O)(O)OP(=O)(O)O[C@@H]3[C@@H]([C@H](C(=O)[C@H](O3)C)O)O)O" T6K SMILES "OpenEye OEToolkits" 1.9.2 "CC1CN(C(=O)NC1=O)C2CC(C(O2)COP(=O)(O)OP(=O)(O)OC3C(C(C(=O)C(O3)C)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier T6K "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,6R)-3,4-dihydroxy-6-methyl-5-oxotetrahydro-2H-pyran-2-yl {(2R,3S,5R)-3-hydroxy-5-[(5R)-5-methyl-2,4-dioxotetrahydropyrimidin-1(2H)-yl]tetrahydrofuran-2-yl}methyl dihydrogen diphosphate (non-preferred name)" T6K "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[[(2R,3S,5R)-5-[(5R)-5-methyl-2,4-bis(oxidanylidene)-1,3-diazinan-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3R,4R,6R)-6-methyl-3,4-bis(oxidanyl)-5-oxidanylidene-oxan-2-yl] hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T6K "Create component" 2015-03-18 RCSB T6K "Initial release" 2015-04-01 RCSB #