data_T6Y # _chem_comp.id T6Y _chem_comp.name "1-{4-[(5-chlorothiophen-2-yl)methyl]piperazin-1-yl}ethan-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 Cl N2 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.768 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T6Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RFH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T6Y N1 N1 N 0 1 N N N N N N 8.426 -2.618 23.287 -0.900 -1.043 -0.038 N1 T6Y 1 T6Y C4 C1 C 0 1 N N N N N N 9.590 -3.023 24.096 0.214 -1.688 -0.746 C4 T6Y 2 T6Y C5 C2 C 0 1 Y N N N N N 9.291 -4.111 25.082 1.518 -1.100 -0.270 C5 T6Y 3 T6Y C6 C3 C 0 1 Y N N N N N 9.747 -5.424 25.050 2.240 -1.559 0.753 C6 T6Y 4 T6Y C7 C4 C 0 1 Y N N N N N 9.430 -6.151 26.221 3.406 -0.856 1.005 C7 T6Y 5 T6Y C8 C5 C 0 1 Y N N N N N 8.533 -5.450 27.016 3.630 0.174 0.186 C8 T6Y 6 T6Y C10 C6 C 0 1 N N N N N N 7.670 -1.552 21.194 -2.049 1.053 0.493 C10 T6Y 7 T6Y N N2 N 0 1 N N N N N N 6.828 -2.717 20.909 -3.306 0.297 0.387 N T6Y 8 T6Y C C7 C 0 1 N N N N N N 7.100 -2.528 18.461 -5.743 0.126 0.001 C T6Y 9 T6Y O O1 O 0 1 N N N N N N 5.755 -4.158 19.552 -4.484 2.122 -0.066 O T6Y 10 T6Y C1 C8 C 0 1 N N N N N N 6.496 -3.187 19.687 -4.467 0.921 0.105 C1 T6Y 11 T6Y C2 C9 C 0 1 N N N N N N 6.390 -3.362 22.143 -3.262 -1.158 0.597 C2 T6Y 12 T6Y C3 C10 C 0 1 N N N N N N 7.599 -3.779 22.945 -2.164 -1.746 -0.295 C3 T6Y 13 T6Y C9 C11 C 0 1 N N N N N N 8.852 -1.952 22.051 -0.998 0.379 -0.395 C9 T6Y 14 T6Y S S1 S 0 1 Y N N N N N 8.271 -3.850 26.453 2.323 0.290 -0.986 S T6Y 15 T6Y CL CL1 CL 0 0 N N N N N N 7.710 -6.026 28.408 5.004 1.233 0.261 CL T6Y 16 T6Y H8 H2 H 0 1 N N N N N N 10.378 -3.378 23.416 0.203 -2.759 -0.542 H8 T6Y 17 T6Y H7 H3 H 0 1 N N N N N N 9.951 -2.143 24.649 0.109 -1.520 -1.817 H7 T6Y 18 T6Y H9 H4 H 0 1 N N N N N N 10.288 -5.846 24.216 1.938 -2.413 1.340 H9 T6Y 19 T6Y H10 H5 H 0 1 N N N N N N 9.833 -7.123 26.465 4.083 -1.120 1.805 H10 T6Y 20 T6Y H13 H6 H 0 1 N N N N N N 7.075 -0.796 21.728 -2.209 2.078 0.157 H13 T6Y 21 T6Y H14 H7 H 0 1 N N N N N N 8.036 -1.129 20.247 -1.709 1.056 1.529 H14 T6Y 22 T6Y H H8 H 0 1 N N N N N N 6.762 -3.055 17.557 -5.937 -0.375 0.949 H T6Y 23 T6Y H2 H9 H 0 1 N N N N N N 6.779 -1.477 18.414 -6.570 0.797 -0.232 H2 T6Y 24 T6Y H1 H10 H 0 1 N N N N N N 8.197 -2.574 18.523 -5.645 -0.617 -0.790 H1 T6Y 25 T6Y H3 H11 H 0 1 N N N N N N 5.784 -2.657 22.731 -3.038 -1.370 1.642 H3 T6Y 26 T6Y H4 H12 H 0 1 N N N N N N 5.787 -4.249 21.900 -4.226 -1.595 0.333 H4 T6Y 27 T6Y H5 H13 H 0 1 N N N N N N 7.265 -4.269 23.872 -2.442 -1.623 -1.342 H5 T6Y 28 T6Y H6 H14 H 0 1 N N N N N N 8.198 -4.486 22.352 -2.043 -2.806 -0.072 H6 T6Y 29 T6Y H11 H15 H 0 1 N N N N N N 9.425 -1.050 22.312 -0.032 0.859 -0.245 H11 T6Y 30 T6Y H12 H16 H 0 1 N N N N N N 9.491 -2.640 21.478 -1.292 0.471 -1.441 H12 T6Y 31 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T6Y C1 C SING N N 1 T6Y C1 O DOUB N N 2 T6Y N C1 SING N N 3 T6Y C2 N SING N N 4 T6Y C3 C2 SING N N 5 T6Y N1 C3 SING N N 6 T6Y C4 N1 SING N N 7 T6Y C5 C4 SING N N 8 T6Y C6 C5 DOUB Y N 9 T6Y C7 C6 SING Y N 10 T6Y C8 C7 DOUB Y N 11 T6Y CL C8 SING N N 12 T6Y C8 S SING Y N 13 T6Y S C5 SING Y N 14 T6Y N1 C9 SING N N 15 T6Y C9 C10 SING N N 16 T6Y C10 N SING N N 17 T6Y C4 H8 SING N N 18 T6Y C4 H7 SING N N 19 T6Y C6 H9 SING N N 20 T6Y C7 H10 SING N N 21 T6Y C10 H13 SING N N 22 T6Y C10 H14 SING N N 23 T6Y C H SING N N 24 T6Y C H2 SING N N 25 T6Y C H1 SING N N 26 T6Y C2 H3 SING N N 27 T6Y C2 H4 SING N N 28 T6Y C3 H5 SING N N 29 T6Y C3 H6 SING N N 30 T6Y C9 H11 SING N N 31 T6Y C9 H12 SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T6Y SMILES ACDLabs 12.01 "N1(CCN(CC1)C(C)=O)Cc2ccc(s2)Cl" T6Y InChI InChI 1.03 "InChI=1S/C11H15ClN2OS/c1-9(15)14-6-4-13(5-7-14)8-10-2-3-11(12)16-10/h2-3H,4-8H2,1H3" T6Y InChIKey InChI 1.03 KIKCPJKIAGFHCO-UHFFFAOYSA-N T6Y SMILES_CANONICAL CACTVS 3.385 "CC(=O)N1CCN(CC1)Cc2sc(Cl)cc2" T6Y SMILES CACTVS 3.385 "CC(=O)N1CCN(CC1)Cc2sc(Cl)cc2" T6Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCN(CC1)Cc2ccc(s2)Cl" T6Y SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)N1CCN(CC1)Cc2ccc(s2)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier T6Y "SYSTEMATIC NAME" ACDLabs 12.01 "1-{4-[(5-chlorothiophen-2-yl)methyl]piperazin-1-yl}ethan-1-one" T6Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[4-[(5-chloranylthiophen-2-yl)methyl]piperazin-1-yl]ethanone" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T6Y "Create component" 2020-03-16 RCSB T6Y "Initial release" 2020-03-25 RCSB T6Y "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id T6Y _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #