data_T7K # _chem_comp.id T7K _chem_comp.name "neutral Yb(III)-caged complex" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H29 N4 O7 Yb" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "8-[(4-hydroxyphenyl)methyl]-2,17,18-trioxa-5,8,11,14-tetraza-1(gamma)-ytterbatricyclo[9.6.3.25,14]docosane-3,16,19-trione; Yb(III) clathrochelate" _chem_comp.pdbx_formal_charge 4 _chem_comp.pdbx_initial_date 2020-12-17 _chem_comp.pdbx_modified_date 2021-07-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 622.518 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T7K _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7BAY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T7K C4 C1 C 0 1 N N N 5.130 -29.669 57.121 5.130 -29.669 57.121 C4 T7K 1 T7K C2 C2 C 0 1 N N N 5.994 -31.500 54.722 5.994 -31.500 54.722 C2 T7K 2 T7K C3 C3 C 0 1 N N N 5.597 -31.145 57.084 5.597 -31.145 57.084 C3 T7K 3 T7K C1 C4 C 0 1 N N N 5.470 -32.199 53.444 5.470 -32.199 53.444 C1 T7K 4 T7K C7 C5 C 0 1 N N N 3.624 -29.015 52.869 3.624 -29.015 52.869 C7 T7K 5 T7K C6 C6 C 0 1 N N N 3.752 -28.056 55.086 3.752 -28.056 55.086 C6 T7K 6 T7K C8 C7 C 0 1 N N N 4.885 -29.895 53.106 4.885 -29.895 53.106 C8 T7K 7 T7K C12 C8 C 0 1 N N N 5.036 -33.258 56.061 5.036 -33.258 56.061 C12 T7K 8 T7K C16 C9 C 0 1 N N N 1.620 -28.122 53.924 1.620 -28.122 53.924 C16 T7K 9 T7K C13 C10 C 0 1 N N N 1.519 -29.986 58.234 1.519 -29.986 58.234 C13 T7K 10 T7K C9 C11 C 0 1 N N N 2.820 -33.017 53.218 2.820 -33.017 53.218 C9 T7K 11 T7K C5 C12 C 0 1 N N N 3.237 -28.271 56.550 3.237 -28.271 56.550 C5 T7K 12 T7K C11 C13 C 0 1 N N N 4.023 -33.578 57.195 4.023 -33.578 57.195 C11 T7K 13 T7K O3 O1 O 0 1 N N N 4.417 -34.154 58.257 4.417 -34.154 58.257 O3 T7K 14 T7K N1 N1 N 1 1 N N N 4.635 -31.270 52.659 4.635 -31.270 52.659 N1 T7K 15 T7K O2 O2 O 0 1 N N N 1.659 -33.207 53.670 1.659 -33.207 53.670 O2 T7K 16 T7K O1 O3 O 0 1 N N N 3.613 -33.996 53.116 3.613 -33.996 53.116 O1 T7K 17 T7K YB YB1 YB 0 0 N N N 2.952 -31.115 55.215 2.952 -31.115 55.215 YB T7K 18 T7K C01 C14 C 0 1 Y N N 1.869 -26.698 53.329 1.869 -26.698 53.329 C01 T7K 19 T7K C02 C15 C 0 1 Y N N 2.198 -25.511 54.268 2.198 -25.511 54.268 C02 T7K 20 T7K C03 C16 C 0 1 Y N N 2.405 -24.305 53.766 2.405 -24.305 53.766 C03 T7K 21 T7K C04 C17 C 0 1 Y N N 2.307 -24.078 52.260 2.307 -24.078 52.260 C04 T7K 22 T7K C05 C18 C 0 1 Y N N 2.017 -25.091 51.453 2.017 -25.091 51.453 C05 T7K 23 T7K C06 C19 C 0 1 Y N N 1.778 -26.502 52.039 1.778 -26.502 52.039 C06 T7K 24 T7K C10 C20 C 0 1 N N N 3.198 -31.575 52.794 3.198 -31.575 52.794 C10 T7K 25 T7K C14 C21 C 0 1 N N N 3.049 -29.846 58.351 3.049 -29.846 58.351 C14 T7K 26 T7K N2 N2 N 1 1 N N N 5.091 -31.803 55.850 5.091 -31.803 55.850 N2 T7K 27 T7K N3 N3 N 1 1 N N N 3.636 -29.604 57.021 3.636 -29.604 57.021 N3 T7K 28 T7K N4 N4 N 1 1 N N N 2.912 -28.825 54.147 2.912 -28.825 54.147 N4 T7K 29 T7K O01 O4 O 0 1 N N N 2.527 -22.783 51.726 2.527 -22.783 51.726 O01 T7K 30 T7K O4 O5 O 0 1 N N N 2.808 -33.268 57.059 2.808 -33.268 57.059 O4 T7K 31 T7K O6 O6 O 0 1 N N N 0.992 -30.304 57.132 0.992 -30.304 57.132 O6 T7K 32 T7K O5 O7 O 0 1 N N N 0.791 -29.782 59.242 0.791 -29.782 59.242 O5 T7K 33 T7K H1 H1 H 0 1 N N N 5.453 -29.208 58.066 5.453 -29.208 58.066 H1 T7K 34 T7K H2 H2 H 0 1 N N N 5.576 -29.124 56.276 5.576 -29.124 56.276 H2 T7K 35 T7K H3 H3 H 0 1 N N N 7.005 -31.866 54.953 7.005 -31.866 54.952 H3 T7K 36 T7K H4 H4 H 0 1 N N N 6.026 -30.413 54.559 6.026 -30.413 54.559 H4 T7K 37 T7K H5 H5 H 0 1 N N N 6.696 -31.180 57.092 6.696 -31.180 57.092 H5 T7K 38 T7K H6 H6 H 0 1 N N N 5.207 -31.674 57.966 5.207 -31.674 57.966 H6 T7K 39 T7K H7 H7 H 0 1 N N N 6.324 -32.525 52.832 6.324 -32.525 52.832 H7 T7K 40 T7K H8 H8 H 0 1 N N N 4.869 -33.075 53.730 4.869 -33.075 53.730 H8 T7K 41 T7K H9 H9 H 0 1 N N N 3.929 -28.036 52.470 3.929 -28.036 52.470 H9 T7K 42 T7K H10 H10 H 0 1 N N N 2.959 -29.514 52.149 2.959 -29.514 52.149 H10 T7K 43 T7K H11 H11 H 0 1 N N N 3.699 -26.987 54.833 3.699 -26.987 54.833 H11 T7K 44 T7K H12 H12 H 0 1 N N N 4.794 -28.400 55.010 4.794 -28.400 55.011 H12 T7K 45 T7K H13 H13 H 0 1 N N N 5.731 -29.477 52.541 5.731 -29.477 52.541 H13 T7K 46 T7K H14 H14 H 0 1 N N N 5.128 -29.900 54.179 5.128 -29.900 54.179 H14 T7K 47 T7K H15 H15 H 0 1 N N N 6.033 -33.625 56.345 6.033 -33.625 56.345 H15 T7K 48 T7K H16 H16 H 0 1 N N N 4.715 -33.752 55.132 4.715 -33.751 55.132 H16 T7K 49 T7K H17 H17 H 0 1 N N N 1.089 -28.026 54.883 1.089 -28.026 54.883 H17 T7K 50 T7K H18 H18 H 0 1 N N N 1.006 -28.706 53.222 1.006 -28.706 53.222 H18 T7K 51 T7K H19 H19 H 0 1 N N N 3.673 -27.505 57.208 3.673 -27.504 57.208 H19 T7K 52 T7K H20 H20 H 0 1 N N N 2.140 -28.189 56.568 2.140 -28.189 56.568 H20 T7K 53 T7K H21 H21 H 0 1 N N N 2.258 -25.668 55.335 2.259 -25.668 55.335 H21 T7K 54 T7K H22 H22 H 0 1 N N N 2.643 -23.481 54.422 2.643 -23.481 54.422 H22 T7K 55 T7K H23 H23 H 0 1 N N N 1.948 -24.930 50.387 1.948 -24.930 50.387 H23 T7K 56 T7K H24 H24 H 0 1 N N N 1.536 -27.325 51.383 1.536 -27.325 51.383 H24 T7K 57 T7K H25 H25 H 0 1 N N N 2.725 -31.381 51.820 2.725 -31.381 51.820 H25 T7K 58 T7K H26 H26 H 0 1 N N N 2.783 -30.889 53.546 2.783 -30.889 53.547 H26 T7K 59 T7K H27 H27 H 0 1 N N N 3.288 -29.001 59.014 3.288 -29.001 59.014 H27 T7K 60 T7K H28 H28 H 0 1 N N N 3.468 -30.772 58.771 3.468 -30.772 58.771 H28 T7K 61 T7K H29 H29 H 0 1 N N N 2.430 -22.809 50.781 2.430 -22.809 50.781 H29 T7K 62 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T7K C4 C3 SING N N 1 T7K C4 N3 SING N N 2 T7K C2 C1 SING N N 3 T7K C2 N2 SING N N 4 T7K C3 N2 SING N N 5 T7K C1 N1 SING N N 6 T7K C7 C8 SING N N 7 T7K C7 N4 SING N N 8 T7K C6 C5 SING N N 9 T7K C6 N4 SING N N 10 T7K C8 N1 SING N N 11 T7K C12 C11 SING N N 12 T7K C12 N2 SING N N 13 T7K C16 C01 SING N N 14 T7K C16 N4 SING N N 15 T7K C13 C14 SING N N 16 T7K C13 O6 SING N N 17 T7K C13 O5 DOUB N N 18 T7K C9 O2 SING N N 19 T7K C9 O1 DOUB N N 20 T7K C9 C10 SING N N 21 T7K C5 N3 SING N N 22 T7K C11 O3 DOUB N N 23 T7K C11 O4 SING N N 24 T7K N1 C10 SING N N 25 T7K YB N2 SING N N 26 T7K C01 C02 DOUB Y N 27 T7K C01 C06 SING Y N 28 T7K C02 C03 SING Y N 29 T7K C03 C04 DOUB Y N 30 T7K C04 C05 SING Y N 31 T7K C04 O01 SING N N 32 T7K C05 C06 DOUB Y N 33 T7K C14 N3 SING N N 34 T7K N1 YB SING N N 35 T7K YB N3 SING N N 36 T7K N4 YB SING N N 37 T7K YB O2 SING N N 38 T7K YB O4 SING N N 39 T7K YB O6 SING N N 40 T7K C4 H1 SING N N 41 T7K C4 H2 SING N N 42 T7K C2 H3 SING N N 43 T7K C2 H4 SING N N 44 T7K C3 H5 SING N N 45 T7K C3 H6 SING N N 46 T7K C1 H7 SING N N 47 T7K C1 H8 SING N N 48 T7K C7 H9 SING N N 49 T7K C7 H10 SING N N 50 T7K C6 H11 SING N N 51 T7K C6 H12 SING N N 52 T7K C8 H13 SING N N 53 T7K C8 H14 SING N N 54 T7K C12 H15 SING N N 55 T7K C12 H16 SING N N 56 T7K C16 H17 SING N N 57 T7K C16 H18 SING N N 58 T7K C5 H19 SING N N 59 T7K C5 H20 SING N N 60 T7K C02 H21 SING N N 61 T7K C03 H22 SING N N 62 T7K C05 H23 SING N N 63 T7K C06 H24 SING N N 64 T7K C10 H25 SING N N 65 T7K C10 H26 SING N N 66 T7K C14 H27 SING N N 67 T7K C14 H28 SING N N 68 T7K O01 H29 SING N N 69 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T7K InChI InChI 1.03 "InChI=1S/C21H32N4O7.Yb/c26-18-3-1-17(2-4-18)13-22-5-7-23(14-19(27)28)9-11-25(16-21(31)32)12-10-24(8-6-22)15-20(29)30;/h1-4,26H,5-16H2,(H,27,28)(H,29,30)(H,31,32);/q;+7/p-3" T7K InChIKey InChI 1.03 CKUMJXQWUQKKED-UHFFFAOYSA-K T7K SMILES_CANONICAL CACTVS 3.385 "Oc1ccc(CN2CCN3CCN4CCN(CC2)CC(=O)O[Yb](OC(=O)C4)OC(=O)C3)cc1" T7K SMILES CACTVS 3.385 "Oc1ccc(CN2CCN3CCN4CCN(CC2)CC(=O)O[Yb](OC(=O)C4)OC(=O)C3)cc1" T7K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C[N+]23CC[N+]45[Yb]2678([N+](CC4)(CC[N+]6(CC3)CC(=O)O7)CC(=O)O8)OC(=O)C5)O" T7K SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C[N+]23CC[N+]45[Yb]2678([N+](CC4)(CC[N+]6(CC3)CC(=O)O7)CC(=O)O8)OC(=O)C5)O" # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 T7K "8-[(4-hydroxyphenyl)methyl]-2,17,18-trioxa-5,8,11,14-tetraza-1(gamma)-ytterbatricyclo[9.6.3.25,14]docosane-3,16,19-trione" PDB ? 2 T7K "Yb(III) clathrochelate" AUTHOR ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T7K "Create component" 2020-12-17 PDBE T7K "Initial release" 2021-07-21 RCSB ##