data_T7R # _chem_comp.id T7R _chem_comp.name "tungsten cofactor" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N10 O14 P2 S4 W" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(5~{a}~{R},8~{R},9~{a}~{R})-2-azanyl-4-oxidanylidene-8-(phosphonooxymethyl)-6-sulfanyl-3,4~{a},5,5~{a},8,9~{a}-hexahydropyrano[3,2-g]pteridin-7-yl]sulfanyl-[[(5~{a}~{R},8~{R},9~{a}~{R})-2-azanyl-4-oxidanylidene-8-(phosphonooxymethyl)-7-sulfanyl-3,5,5~{a},6,7,8,9~{a},10-octahydropyrano[3,2-g]pteridin-6-yl]sulfanyl]-bis($l^{1}-oxidanyl)tungsten" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-12-22 _chem_comp.pdbx_modified_date 2023-05-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 1002.511 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T7R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8C0Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T7R C1 C1 C 0 1 N N N 143.977 109.873 93.965 -1.655 1.716 1.778 C1 T7R 1 T7R C2 C2 C 0 1 N N R 140.405 114.298 91.498 4.693 -1.446 -0.607 C2 T7R 2 T7R C3 C3 C 0 1 N N N 142.638 115.341 91.542 4.731 0.112 1.321 C3 T7R 3 T7R C4 C4 C 0 1 N N R 143.157 108.595 94.131 -2.593 0.525 1.995 C4 T7R 4 T7R C5 C5 C 0 1 N N N 144.036 115.340 91.266 4.795 0.350 2.696 C5 T7R 5 T7R C6 C6 C 0 1 N N N 141.735 108.678 93.569 -2.010 -0.721 1.281 C6 T7R 6 T7R O2 O1 O 0 1 N N N 139.231 109.181 90.064 -0.028 -3.939 1.676 O2 T7R 7 T7R O3 O2 O 0 1 N N N 137.247 109.388 91.856 0.451 -4.421 -0.708 O3 T7R 8 T7R O4 O3 O 0 1 N N N 140.366 114.886 93.818 4.421 -0.487 -2.760 O4 T7R 9 T7R O5 O4 O 0 1 N N N 142.700 113.814 97.102 1.852 3.843 -3.684 O5 T7R 10 T7R O6 O5 O 0 1 N N N 141.040 114.850 98.767 4.265 4.140 -4.363 O6 T7R 11 T7R C10 C7 C 0 1 N N R 140.954 107.137 95.403 -4.271 -1.223 0.390 C10 T7R 12 T7R C14 C8 C 0 1 N N N 140.506 107.015 97.760 -5.641 0.138 -1.158 C14 T7R 13 T7R C15 C9 C 0 1 N N N 139.464 106.793 98.714 -6.007 0.502 -2.456 C15 T7R 14 T7R C19 C10 C 0 1 N N N 141.179 105.733 100.082 -7.994 1.405 -1.584 C19 T7R 15 T7R C24 C11 C 0 1 N N N 141.742 106.417 97.991 -6.491 0.451 -0.106 C24 T7R 16 T7R C28 C12 C 0 1 N N R 142.457 106.990 95.702 -4.755 -0.284 1.488 C28 T7R 17 T7R C8 C13 C 0 1 N N N 140.740 107.974 94.159 -2.757 -1.502 0.570 C8 T7R 18 T7R N12 N1 N 0 1 N N N 140.287 107.726 96.573 -4.434 -0.552 -0.908 N12 T7R 19 T7R N17 N2 N 0 1 N N N 139.927 106.263 99.927 -7.181 1.141 -2.645 N17 T7R 20 T7R N20 N3 N 0 1 N N N 141.418 105.125 101.282 -9.191 2.046 -1.797 N20 T7R 21 T7R N23 N4 N 0 1 N N N 142.076 105.736 99.116 -7.654 1.064 -0.358 N23 T7R 22 T7R N25 N5 N 0 1 N N N 142.711 106.496 97.020 -6.121 0.158 1.196 N25 T7R 23 T7R O16 O6 O 0 1 N N N 138.232 107.019 98.568 -5.279 0.247 -3.401 O16 T7R 24 T7R O29 O7 O 0 1 N N N 143.146 108.241 95.513 -3.878 0.846 1.491 O29 T7R 25 T7R O31 O8 O 0 1 N N N 145.608 111.089 96.365 0.033 4.080 2.933 O31 T7R 26 T7R O32 O9 O 0 1 N N N 147.587 109.881 95.305 -2.109 5.244 3.586 O32 T7R 27 T7R O33 O10 O 0 1 N N N 146.503 111.910 94.118 -1.446 4.911 1.064 O33 T7R 28 T7R O34 O11 O 0 1 N N N 145.359 109.611 94.239 -2.126 2.837 2.530 O34 T7R 29 T7R P30 P1 P 0 1 N N N 146.324 110.679 95.061 -1.381 4.264 2.537 P30 T7R 30 T7R S7 S1 S 0 1 N N N 141.506 109.510 92.032 -0.289 -0.991 1.502 S7 T7R 31 T7R S9 S2 S 0 1 N N N 139.028 108.097 93.689 -2.139 -2.931 -0.241 S9 T7R 32 T7R C11 C14 C 0 1 N N N 140.276 113.140 95.424 2.571 1.032 -2.522 C11 T7R 33 T7R C41 C15 C 0 1 N N R 139.556 113.786 94.250 3.006 -0.421 -2.736 C41 T7R 34 T7R C61 C16 C 0 1 N N N 139.286 112.785 93.145 2.426 -1.301 -1.599 C61 T7R 35 T7R C7 C17 C 0 1 N N N 143.988 117.752 91.702 4.048 2.542 2.295 C7 T7R 36 T7R C9 C18 C 0 1 N N N 142.059 116.543 91.969 4.349 1.143 0.475 C9 T7R 37 T7R C27 C19 C 0 1 N N R 140.015 115.366 92.531 4.997 -0.233 -1.473 C27 T7R 38 T7R C81 C20 C 0 1 N N N 139.703 113.007 91.874 3.175 -1.756 -0.649 C81 T7R 39 T7R N1 N6 N 0 1 N N N 141.878 114.163 91.427 5.037 -1.158 0.790 N1 T7R 40 T7R W1 W1 W 0 1 N N N 138.935 109.782 91.682 0.210 -2.968 0.238 W1 T7R 41 T7R N2 N7 N 0 1 N N N 144.659 116.604 91.388 4.460 1.572 3.160 N2 T7R 42 T7R N3 N8 N 0 1 N N N 144.702 118.912 91.638 3.685 3.772 2.787 N3 T7R 43 T7R N4 N9 N 0 1 N N N 142.714 117.745 92.024 3.996 2.325 0.997 N4 T7R 44 T7R N5 N10 N 0 1 N N N 140.727 116.585 92.270 4.378 0.964 -0.897 N5 T7R 45 T7R O1 O12 O 0 1 N N N 144.757 114.362 90.974 5.145 -0.531 3.463 O1 T7R 46 T7R O7 O13 O 0 1 N N N 140.941 112.318 98.277 3.552 4.085 -1.833 O7 T7R 47 T7R O8 O14 O 0 1 N N N 140.256 114.039 96.528 3.412 1.898 -3.286 O8 T7R 48 T7R P1 P2 P 0 1 N N N 141.303 113.739 97.785 3.240 3.499 -3.300 P1 T7R 49 T7R S71 S3 S 0 1 N N N 138.110 111.558 93.539 0.704 -1.632 -1.691 S71 T7R 50 T7R S91 S4 S 0 1 N N N 139.496 111.792 90.601 2.558 -2.744 0.663 S91 T7R 51 T7R H1 H1 H 0 1 N N N 143.874 110.240 92.933 -0.651 1.453 2.110 H1 T7R 52 T7R H2 H2 H 0 1 N N N 143.606 110.637 94.664 -1.632 1.973 0.719 H2 T7R 53 T7R H3 H3 H 0 1 N N N 140.031 114.621 90.515 5.255 -2.308 -0.958 H3 T7R 54 T7R H4 H4 H 0 1 N N N 143.678 107.802 93.575 -2.670 0.322 3.066 H4 T7R 55 T7R H7 H7 H 0 1 N N N 141.795 115.426 98.804 4.217 5.104 -4.425 H7 T7R 56 T7R H8 H8 H 0 1 N N N 140.541 106.134 95.222 -4.831 -2.151 0.410 H8 T7R 57 T7R H10 H10 H 0 1 N N N 142.858 106.265 94.979 -4.721 -0.786 2.451 H10 T7R 58 T7R H11 H11 H 0 1 N N N 140.628 108.658 96.695 -3.735 -0.582 -1.574 H11 T7R 59 T7R H13 H13 H 0 1 N N N 139.313 106.273 100.716 -7.448 1.413 -3.537 H13 T7R 60 T7R H14 H14 H 0 1 N N N 142.292 104.667 101.445 -9.450 2.304 -2.695 H14 T7R 61 T7R H15 H15 H 0 1 N N N 140.719 105.138 101.997 -9.778 2.239 -1.049 H15 T7R 62 T7R H16 H16 H 0 1 N N N 147.718 109.772 96.240 -1.711 6.124 3.644 H16 T7R 63 T7R H17 H17 H 0 1 N N N 146.134 112.682 94.531 -2.345 5.060 0.739 H17 T7R 64 T7R H19 H19 H 0 1 N N N 139.767 112.205 95.700 1.536 1.153 -2.844 H19 T7R 65 T7R H20 H20 H 0 1 N N N 141.317 112.922 95.144 2.654 1.284 -1.465 H20 T7R 66 T7R H21 H21 H 0 1 N N N 138.589 114.167 94.611 2.615 -0.772 -3.694 H21 T7R 67 T7R H23 H23 H 0 1 N N N 138.931 115.540 92.469 6.071 -0.095 -1.565 H23 T7R 68 T7R H25 H25 H 0 1 N N N 142.160 113.550 92.165 5.467 -1.830 1.339 H25 T7R 69 T7R H26 H26 H 0 1 N N N 145.646 116.661 91.236 4.510 1.763 4.110 H26 T7R 70 T7R H27 H27 H 0 1 N N N 144.257 119.785 91.839 3.722 3.944 3.741 H27 T7R 71 T7R H28 H28 H 0 1 N N N 145.671 118.890 91.390 3.390 4.470 2.181 H28 T7R 72 T7R H29 H29 H 0 1 N N N 140.632 117.156 93.086 3.985 1.636 -1.479 H29 T7R 73 T7R H30 H30 H 0 1 N N N 141.651 111.721 98.073 4.446 3.896 -1.517 H30 T7R 74 T7R H5 H5 H 0 1 N N N 143.432 107.077 97.397 -6.768 0.245 1.915 H5 T7R 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T7R C1 C4 SING N N 1 T7R C1 O34 SING N N 2 T7R C2 C27 SING N N 3 T7R C2 C81 SING N N 4 T7R C2 N1 SING N N 5 T7R C3 C5 SING N N 6 T7R C3 C9 DOUB N N 7 T7R C3 N1 SING N N 8 T7R C4 C6 SING N N 9 T7R C4 O29 SING N N 10 T7R C5 N2 SING N N 11 T7R C5 O1 DOUB N N 12 T7R C6 C8 DOUB N N 13 T7R C6 S7 SING N N 14 T7R O2 W1 DOUB N N 15 T7R O3 W1 DOUB N N 16 T7R O4 C41 SING N N 17 T7R O4 C27 SING N N 18 T7R O5 P1 DOUB N N 19 T7R O6 P1 SING N N 20 T7R C10 C28 SING N N 21 T7R C10 C8 SING N N 22 T7R C10 N12 SING N N 23 T7R C14 C15 SING N N 24 T7R C14 C24 DOUB N N 25 T7R C14 N12 SING N N 26 T7R C15 N17 SING N N 27 T7R C15 O16 DOUB N N 28 T7R C19 N17 SING N N 29 T7R C19 N20 SING N N 30 T7R C19 N23 DOUB N N 31 T7R C24 N23 SING N N 32 T7R C24 N25 SING N N 33 T7R C28 N25 SING N N 34 T7R C28 O29 SING N N 35 T7R C8 S9 SING N N 36 T7R O31 P30 DOUB N N 37 T7R O32 P30 SING N N 38 T7R O33 P30 SING N N 39 T7R O34 P30 SING N N 40 T7R C11 C41 SING N N 41 T7R C11 O8 SING N N 42 T7R C41 C61 SING N N 43 T7R C61 C81 DOUB N N 44 T7R C61 S71 SING N N 45 T7R C7 N2 SING N N 46 T7R C7 N3 SING N N 47 T7R C7 N4 DOUB N N 48 T7R C9 N4 SING N N 49 T7R C9 N5 SING N N 50 T7R C27 N5 SING N N 51 T7R C81 S91 SING N N 52 T7R W1 S91 SING N N 53 T7R O7 P1 SING N N 54 T7R O8 P1 SING N N 55 T7R W1 S7 SING N N 56 T7R C1 H1 SING N N 57 T7R C1 H2 SING N N 58 T7R C2 H3 SING N N 59 T7R C4 H4 SING N N 60 T7R O6 H7 SING N N 61 T7R C10 H8 SING N N 62 T7R C28 H10 SING N N 63 T7R N12 H11 SING N N 64 T7R N17 H13 SING N N 65 T7R N20 H14 SING N N 66 T7R N20 H15 SING N N 67 T7R O32 H16 SING N N 68 T7R O33 H17 SING N N 69 T7R C11 H19 SING N N 70 T7R C11 H20 SING N N 71 T7R C41 H21 SING N N 72 T7R C27 H23 SING N N 73 T7R N1 H25 SING N N 74 T7R N2 H26 SING N N 75 T7R N3 H27 SING N N 76 T7R N3 H28 SING N N 77 T7R N5 H29 SING N N 78 T7R O7 H30 SING N N 79 T7R W1 S71 SING N N 80 T7R W1 S9 SING N N 81 T7R N25 H5 SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T7R InChI InChI 1.06 "InChI=1S/2C10H14N5O6PS2.2O.W/c2*11-10-14-7-4(8(16)15-10)12-3-6(24)5(23)2(21-9(3)13-7)1-20-22(17,18)19;;;/h2*2-3,9,12,23-24H,1H2,(H2,17,18,19)(H4,11,13,14,15,16);;;/q;;;;+4/p-4/t2*2-,3+,9-;;;/m11.../s1" T7R InChIKey InChI 1.06 KOSOUPJZBKQLDF-RRYOYCSRSA-J T7R SMILES_CANONICAL CACTVS 3.385 "NC1=NC2=C(N[C@@H]3[C@H](N2)O[C@H](CO[P](O)(O)=O)C4=C3S[W]5(=O)(=O)(S4)SC6=C(S5)[C@@H]7NC8=C(N[C@@H]7O[C@@H]6CO[P](O)(O)=O)N=C(N)NC8=O)C(=O)N1" T7R SMILES CACTVS 3.385 "NC1=NC2=C(N[CH]3[CH](N2)O[CH](CO[P](O)(O)=O)C4=C3S[W]5(=O)(=O)(S4)SC6=C(S5)[CH]7NC8=C(N[CH]7O[CH]6CO[P](O)(O)=O)N=C(N)NC8=O)C(=O)N1" T7R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C([C@@H]1C2=C([C@H]3[C@@H](O1)NC4=C(N3)C(=O)NC(=N4)N)S[W]5(=O)(=O)(S2)SC6=C(S5)[C@H]7[C@H](NC8=C(N7)C(=O)NC(=N8)N)O[C@@H]6COP(=O)(O)O)OP(=O)(O)O" T7R SMILES "OpenEye OEToolkits" 2.0.7 "C(C1C2=C(C3C(O1)NC4=C(N3)C(=O)NC(=N4)N)S[W]5(=O)(=O)(S2)SC6=C(S5)C7C(NC8=C(N7)C(=O)NC(=N8)N)OC6COP(=O)(O)O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id T7R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier ;[(1~{R},1'~{R},10~{R},10'~{R},16~{R},16'~{R})-5,5'-bis(azanyl)-7,7',13,13-tetrakis(oxidanylidene)-16'-(phosphonooxymethyl)-13,13'-spirobi[17-oxa-12,14-dithia-2,4,6,9-tetraza-13$l^{8}-tungstatetracyclo[8.7.0.0^{3,8}.0^{11,15}]heptadeca-3(8),4,11(15)-triene]-16-yl]methyl dihydrogen phosphate ; # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id T7R _pdbx_chem_comp_synonyms.name "[(5~{a}~{R},8~{R},9~{a}~{R})-2-azanyl-4-oxidanylidene-8-(phosphonooxymethyl)-6-sulfanyl-3,4~{a},5,5~{a},8,9~{a}-hexahydropyrano[3,2-g]pteridin-7-yl]sulfanyl-[[(5~{a}~{R},8~{R},9~{a}~{R})-2-azanyl-4-oxidanylidene-8-(phosphonooxymethyl)-7-sulfanyl-3,5,5~{a},6,7,8,9~{a},10-octahydropyrano[3,2-g]pteridin-6-yl]sulfanyl]-bis($l^{1}-oxidanyl)tungsten" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T7R "Create component" 2022-12-22 PDBE T7R "Modify linking type" 2023-01-18 PDBE T7R "Initial release" 2023-05-31 RCSB #