data_T8T
#
_chem_comp.id T8T
_chem_comp.name "2'-deoxyguanosine-5'-O-(1-thiotriphosphate)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H16 N5 O12 P3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-07-25
_chem_comp.pdbx_modified_date 2013-10-18
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 523.247
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code T8T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4bzc
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
T8T N1 N1 N 0 1 N N N 46.202 24.678 33.008 -7.829 2.107 0.068 N1 T8T 1
T8T C2 C2 C 0 1 N N N 44.992 25.101 33.333 -7.388 1.582 1.191 C2 T8T 2
T8T N2 N2 N 0 1 N N N 43.924 24.583 32.715 -8.133 1.738 2.329 N2 T8T 3
T8T N3 N3 N 0 1 N N N 44.734 26.028 34.257 -6.221 0.889 1.264 N3 T8T 4
T8T C4 C4 C 0 1 Y N N 45.730 26.561 34.935 -5.446 0.710 0.148 C4 T8T 5
T8T C5 C5 C 0 1 Y N N 47.066 26.183 34.634 -5.873 1.248 -1.060 C5 T8T 6
T8T C6 C6 C 0 1 N N N 47.227 25.193 33.611 -7.140 1.986 -1.077 C6 T8T 7
T8T O6 O6 O 0 1 N N N 48.345 24.826 33.312 -7.561 2.478 -2.113 O6 T8T 8
T8T N7 N7 N 0 1 Y N N 47.836 26.885 35.428 -4.945 0.936 -1.993 N7 T8T 9
T8T C8 C8 C 0 1 Y N N 47.027 27.677 36.182 -3.991 0.249 -1.434 C8 T8T 10
T8T N9 N9 N 0 1 Y N N 45.760 27.451 35.861 -4.263 0.086 -0.107 N9 T8T 11
T8T PA PA P 0 1 N N R 47.526 31.498 37.142 2.215 -1.608 -0.419 PA T8T 12
T8T PB PB P 0 1 N N N 48.414 33.461 38.888 4.793 -0.210 0.005 PB T8T 13
T8T PG PG P 0 1 N N N 50.147 35.541 38.172 6.318 2.272 0.554 PG T8T 14
T8T "C1'" "C1'" C 0 1 N N R 44.501 28.020 36.344 -3.434 -0.628 0.866 "C1'" T8T 15
T8T S1A S1A S 0 1 N N N 47.650 32.065 35.325 2.019 -1.172 -2.485 S1A T8T 16
T8T O1B O1B O 0 1 N N N 49.345 32.380 39.366 5.044 -0.086 -1.448 O1B T8T 17
T8T O1G O1G O 0 1 N N N 51.480 34.810 38.397 5.903 3.634 1.307 O1G T8T 18
T8T "C2'" "C2'" C 0 1 N N N 44.482 28.264 37.842 -3.928 -2.081 1.010 "C2'" T8T 19
T8T O2A O2A O 0 1 N N N 48.569 30.572 37.558 2.726 -2.987 -0.253 O2A T8T 20
T8T O2B O2B O 0 1 N N N 47.775 34.414 39.836 5.719 -1.379 0.611 O2B T8T 21
T8T O2G O2G O 0 1 N N N 49.426 36.095 39.370 7.681 1.701 1.191 O2G T8T 22
T8T "C3'" "C3'" C 0 1 N N S 43.770 29.565 37.948 -2.698 -2.940 0.632 "C3'" T8T 23
T8T "O3'" "O3'" O 0 1 N N N 42.399 29.314 38.152 -2.575 -4.066 1.504 "O3'" T8T 24
T8T O3A O3A O 0 1 N N N 47.301 32.866 37.944 3.244 -0.569 0.254 O3A T8T 25
T8T O3B O3B O 0 1 N N N 49.221 34.284 37.798 5.145 1.183 0.731 O3B T8T 26
T8T O3G O3G O 0 1 N N N 50.076 36.395 36.930 6.523 2.547 -0.885 O3G T8T 27
T8T "C4'" "C4'" C 0 1 N N R 43.930 30.214 36.595 -1.529 -1.945 0.846 "C4'" T8T 28
T8T "O4'" "O4'" O 0 1 N N N 44.313 29.228 35.646 -2.074 -0.684 0.402 "O4'" T8T 29
T8T "C5'" "C5'" C 0 1 N N N 44.968 31.310 36.691 -0.322 -2.341 -0.007 "C5'" T8T 30
T8T "O5'" "O5'" O 0 1 N N N 46.152 30.698 37.237 0.778 -1.479 0.295 "O5'" T8T 31
T8T HN2 HN2 H 0 1 N N N 44.044 23.881 32.013 -8.969 2.229 2.297 HN2 T8T 32
T8T HN2A HN2A H 0 0 N N N 43.006 24.898 32.955 -7.825 1.358 3.166 HN2A T8T 33
T8T HN3 HN3 H 0 1 N N N 43.793 26.316 34.433 -5.934 0.518 2.114 HN3 T8T 34
T8T H8 H8 H 0 1 N N N 47.364 28.382 36.928 -3.118 -0.134 -1.942 H8 T8T 35
T8T "H1'" "H1'" H 0 1 N N N 43.683 27.325 36.102 -3.477 -0.124 1.832 "H1'" T8T 36
T8T HS1A HS1A H 0 0 N N N 48.707 31.429 34.915 1.554 0.090 -2.485 HS1A T8T 37
T8T HO1G HO1G H 0 0 N N N 52.079 35.018 37.689 6.565 4.336 1.242 HO1G T8T 38
T8T "H2'" "H2'" H 0 1 N N N 43.935 27.468 38.367 -4.232 -2.280 2.038 "H2'" T8T 39
T8T "H2'A" "H2'A" H 0 0 N N N 45.503 28.336 38.246 -4.753 -2.273 0.324 "H2'A" T8T 40
T8T HO2B HO2B H 0 0 N N N 48.053 34.214 40.722 5.607 -1.517 1.562 HO2B T8T 41
T8T HO2G HO2G H 0 0 N N N 49.026 36.926 39.143 7.620 1.498 2.135 HO2G T8T 42
T8T "H3'" "H3'" H 0 1 N N N 44.205 30.194 38.739 -2.751 -3.260 -0.408 "H3'" T8T 43
T8T "HO3'" "HO3'" H 0 0 N N N 41.933 30.139 38.221 -3.328 -4.672 1.472 "HO3'" T8T 44
T8T "H4'" "H4'" H 0 1 N N N 42.969 30.663 36.303 -1.253 -1.897 1.900 "H4'" T8T 45
T8T "H5'" "H5'" H 0 1 N N N 45.178 31.724 35.694 -0.045 -3.372 0.211 "H5'" T8T 46
T8T "H5'A" "H5'A" H 0 0 N N N 44.614 32.113 37.354 -0.577 -2.248 -1.062 "H5'A" T8T 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
T8T N1 C2 DOUB N N 1
T8T N1 C6 SING N N 2
T8T N2 C2 SING N N 3
T8T C2 N3 SING N N 4
T8T N2 HN2 SING N N 5
T8T N2 HN2A SING N N 6
T8T N3 C4 SING N N 7
T8T N3 HN3 SING N N 8
T8T C5 C4 DOUB Y N 9
T8T C4 N9 SING Y N 10
T8T C6 C5 SING N N 11
T8T C5 N7 SING Y N 12
T8T O6 C6 DOUB N N 13
T8T N7 C8 DOUB Y N 14
T8T N9 C8 SING Y N 15
T8T C8 H8 SING N N 16
T8T N9 "C1'" SING N N 17
T8T S1A PA SING N N 18
T8T PA "O5'" SING N N 19
T8T PA O2A DOUB N N 20
T8T PA O3A SING N N 21
T8T O3B PB SING N N 22
T8T O3A PB SING N N 23
T8T PB O1B DOUB N N 24
T8T PB O2B SING N N 25
T8T O3G PG DOUB N N 26
T8T O3B PG SING N N 27
T8T PG O1G SING N N 28
T8T PG O2G SING N N 29
T8T "O4'" "C1'" SING N N 30
T8T "C1'" "C2'" SING N N 31
T8T "C1'" "H1'" SING N N 32
T8T S1A HS1A SING N N 33
T8T O1G HO1G SING N N 34
T8T "C2'" "C3'" SING N N 35
T8T "C2'" "H2'" SING N N 36
T8T "C2'" "H2'A" SING N N 37
T8T O2B HO2B SING N N 38
T8T O2G HO2G SING N N 39
T8T "C4'" "C3'" SING N N 40
T8T "C3'" "O3'" SING N N 41
T8T "C3'" "H3'" SING N N 42
T8T "O3'" "HO3'" SING N N 43
T8T "O4'" "C4'" SING N N 44
T8T "C4'" "C5'" SING N N 45
T8T "C4'" "H4'" SING N N 46
T8T "C5'" "O5'" SING N N 47
T8T "C5'" "H5'" SING N N 48
T8T "C5'" "H5'A" SING N N 49
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
T8T SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(S)OCC3OC(n1cnc2c1NC(=NC2=O)N)CC3O"
T8T InChI InChI 1.03 "InChI=1S/C10H16N5O12P3S/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(25-6)2-24-30(23,31)27-29(21,22)26-28(18,19)20/h3-6,16H,1-2H2,(H,21,22)(H,23,31)(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+,30+/m0/s1"
T8T InChIKey InChI 1.03 IOCRYHATDKHWPM-KUFCIHQDSA-N
T8T SMILES_CANONICAL CACTVS 3.385 "NC1=NC(=O)c2ncn([C@H]3C[C@H](O)[C@@H](CO[P@](S)(=O)O[P](O)(=O)O[P](O)(O)=O)O3)c2N1"
T8T SMILES CACTVS 3.385 "NC1=NC(=O)c2ncn([CH]3C[CH](O)[CH](CO[P](S)(=O)O[P](O)(=O)O[P](O)(O)=O)O3)c2N1"
T8T SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO[P@](=O)(OP(=O)(O)OP(=O)(O)O)S)O)NC(=NC2=O)N"
T8T SMILES "OpenEye OEToolkits" 1.7.6 "c1nc2c(n1C3CC(C(O3)COP(=O)(OP(=O)(O)OP(=O)(O)O)S)O)NC(=NC2=O)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
T8T "SYSTEMATIC NAME" ACDLabs 12.01 "2'-deoxy-5'-O-[(R)-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}(sulfanyl)phosphoryl]guanosine"
T8T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[[(2R,3S,5R)-5-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-sulfanyl-phosphoryl] phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
T8T "Create component" 2013-07-25 EBI
T8T "Initial release" 2013-10-23 RCSB
#