data_T9I # _chem_comp.id T9I _chem_comp.name "N-[(1R)-2,3-dihydro-1H-inden-1-yl]adenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H21 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-07-20 _chem_comp.pdbx_modified_date 2023-01-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 383.401 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T9I _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CXX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T9I C7 C1 C 0 1 Y N N -31.608 1.719 14.365 -0.728 0.500 0.291 C7 T9I 1 T9I C5 C2 C 0 1 Y N N -32.149 0.172 12.915 -1.501 -0.898 -1.228 C5 T9I 2 T9I C4 C3 C 0 1 N N R -33.459 0.157 15.095 -3.202 -0.018 0.415 C4 T9I 3 T9I C3 C4 C 0 1 N N N -33.673 -3.158 16.406 -6.295 -1.697 -0.537 C3 T9I 4 T9I C2 C5 C 0 1 N N R -34.002 -1.680 16.372 -5.365 -0.768 0.245 C2 T9I 5 T9I C1 C6 C 0 1 N N R -34.747 -0.366 14.476 -3.961 1.166 -0.225 C1 T9I 6 T9I C6 C7 C 0 1 Y N N -30.785 1.766 13.250 0.311 0.088 -0.560 C6 T9I 7 T9I C10 C8 C 0 1 N N R -28.741 2.094 11.104 4.000 0.770 -0.879 C10 T9I 8 T9I C18 C9 C 0 1 Y N N -29.242 2.713 7.519 6.901 -1.062 0.460 C18 T9I 9 T9I C11 C10 C 0 1 N N N -27.332 1.767 10.571 4.853 0.720 -2.164 C11 T9I 10 T9I C12 C11 C 0 1 N N N -27.641 1.379 9.115 6.265 0.429 -1.614 C12 T9I 11 T9I C13 C12 C 0 1 Y N N -28.786 2.286 8.762 6.038 -0.294 -0.303 C13 T9I 12 T9I C17 C13 C 0 1 Y N N -30.356 3.535 7.436 6.466 -1.633 1.640 C17 T9I 13 T9I C14 C14 C 0 1 Y N N -29.443 2.697 9.912 4.735 -0.097 0.121 C14 T9I 14 T9I C16 C15 C 0 1 Y N N -31.013 3.936 8.586 5.165 -1.434 2.064 C16 T9I 15 T9I C15 C16 C 0 1 Y N N -30.559 3.524 9.829 4.302 -0.669 1.305 C15 T9I 16 T9I N N1 N 0 1 Y N N -32.471 0.672 14.150 -1.858 -0.135 -0.157 N T9I 17 T9I C C17 C 0 1 N N S -35.267 -1.297 15.588 -5.417 0.661 -0.340 C T9I 18 T9I O O1 O 0 1 N N N -36.212 -0.657 16.440 -6.294 1.486 0.430 O T9I 19 T9I C8 C18 C 0 1 Y N N -30.571 3.419 15.318 0.767 1.803 1.454 C8 T9I 20 T9I C9 C19 C 0 1 Y N N -29.760 2.750 13.263 1.600 0.598 -0.329 C9 T9I 21 T9I N1 N2 N 0 1 Y N N -31.147 0.786 12.335 -0.228 -0.766 -1.464 N1 T9I 22 T9I N2 N3 N 0 1 Y N N -31.556 2.525 15.430 -0.456 1.351 1.276 N2 T9I 23 T9I N3 N4 N 0 1 Y N N -29.688 3.575 14.327 1.775 1.444 0.680 N3 T9I 24 T9I N4 N5 N 0 1 N N N -28.803 2.903 12.311 2.663 0.228 -1.135 N4 T9I 25 T9I O1 O2 O 0 1 N N N -35.621 0.726 14.215 -3.895 2.318 0.618 O1 T9I 26 T9I O2 O3 O 0 1 N N N -33.874 -3.776 15.141 -6.295 -2.992 0.068 O2 T9I 27 T9I O3 O4 O 0 1 N N N -32.908 -0.951 15.772 -3.991 -1.183 0.087 O3 T9I 28 T9I H1 H1 H 0 1 N N N -32.674 -0.655 12.460 -2.176 -1.520 -1.798 H1 T9I 29 T9I H2 H2 H 0 1 N N N -33.716 0.947 15.816 -3.144 0.109 1.496 H2 T9I 30 T9I H3 H3 H 0 1 N N N -34.319 -3.649 17.148 -7.307 -1.292 -0.526 H3 T9I 31 T9I H4 H4 H 0 1 N N N -32.620 -3.281 16.698 -5.947 -1.778 -1.567 H4 T9I 32 T9I H5 H5 H 0 1 N N N -34.133 -1.337 17.409 -5.641 -0.756 1.300 H5 T9I 33 T9I H6 H6 H 0 1 N N N -34.529 -0.945 13.567 -3.556 1.390 -1.212 H6 T9I 34 T9I H7 H7 H 0 1 N N N -29.231 1.133 11.317 3.928 1.793 -0.512 H7 T9I 35 T9I H8 H8 H 0 1 N N N -28.729 2.405 6.620 7.918 -1.216 0.130 H8 T9I 36 T9I H9 H9 H 0 1 N N N -26.877 0.931 11.122 4.519 -0.084 -2.820 H9 T9I 37 T9I H10 H10 H 0 1 N N N -26.669 2.643 10.622 4.826 1.678 -2.684 H10 T9I 38 T9I H11 H11 H 0 1 N N N -27.936 0.322 9.041 6.817 -0.207 -2.306 H11 T9I 39 T9I H12 H12 H 0 1 N N N -26.774 1.564 8.464 6.805 1.361 -1.445 H12 T9I 40 T9I H13 H13 H 0 1 N N N -30.712 3.863 6.471 7.143 -2.231 2.232 H13 T9I 41 T9I H14 H14 H 0 1 N N N -31.883 4.572 8.515 4.824 -1.880 2.987 H14 T9I 42 T9I H15 H15 H 0 1 N N N -31.068 3.843 10.727 3.285 -0.515 1.637 H15 T9I 43 T9I H16 H16 H 0 1 N N N -35.699 -2.200 15.132 -5.731 0.636 -1.383 H16 T9I 44 T9I H17 H17 H 0 1 N N N -36.503 -1.268 17.107 -7.221 1.214 0.394 H17 T9I 45 T9I H18 H18 H 0 1 N N N -30.474 4.111 16.141 0.953 2.493 2.264 H18 T9I 46 T9I H19 H19 H 0 1 N N N -27.929 2.768 12.777 2.523 -0.391 -1.869 H19 T9I 47 T9I H20 H20 H 0 1 N N N -36.426 0.402 13.828 -4.355 3.091 0.264 H20 T9I 48 T9I H21 H21 H 0 1 N N N -33.658 -4.699 15.201 -6.864 -3.634 -0.376 H21 T9I 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T9I C17 C18 DOUB Y N 1 T9I C17 C16 SING Y N 2 T9I C18 C13 SING Y N 3 T9I C16 C15 DOUB Y N 4 T9I C13 C12 SING N N 5 T9I C13 C14 DOUB Y N 6 T9I C12 C11 SING N N 7 T9I C15 C14 SING Y N 8 T9I C14 C10 SING N N 9 T9I C11 C10 SING N N 10 T9I C10 N4 SING N N 11 T9I N4 C9 SING N N 12 T9I N1 C5 DOUB Y N 13 T9I N1 C6 SING Y N 14 T9I C5 N SING Y N 15 T9I C6 C9 SING Y N 16 T9I C6 C7 DOUB Y N 17 T9I C9 N3 DOUB Y N 18 T9I N C7 SING Y N 19 T9I N C4 SING N N 20 T9I O1 C1 SING N N 21 T9I N3 C8 SING Y N 22 T9I C7 N2 SING Y N 23 T9I C1 C4 SING N N 24 T9I C1 C SING N N 25 T9I C4 O3 SING N N 26 T9I O2 C3 SING N N 27 T9I C8 N2 DOUB Y N 28 T9I C C2 SING N N 29 T9I C O SING N N 30 T9I O3 C2 SING N N 31 T9I C2 C3 SING N N 32 T9I C5 H1 SING N N 33 T9I C4 H2 SING N N 34 T9I C3 H3 SING N N 35 T9I C3 H4 SING N N 36 T9I C2 H5 SING N N 37 T9I C1 H6 SING N N 38 T9I C10 H7 SING N N 39 T9I C18 H8 SING N N 40 T9I C11 H9 SING N N 41 T9I C11 H10 SING N N 42 T9I C12 H11 SING N N 43 T9I C12 H12 SING N N 44 T9I C17 H13 SING N N 45 T9I C16 H14 SING N N 46 T9I C15 H15 SING N N 47 T9I C H16 SING N N 48 T9I O H17 SING N N 49 T9I C8 H18 SING N N 50 T9I N4 H19 SING N N 51 T9I O1 H20 SING N N 52 T9I O2 H21 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T9I SMILES ACDLabs 12.01 "OCC1OC(n2cnc3c(NC4CCc5ccccc54)ncnc32)C(O)C1O" T9I InChI InChI 1.06 "InChI=1S/C19H21N5O4/c25-7-13-15(26)16(27)19(28-13)24-9-22-14-17(20-8-21-18(14)24)23-12-6-5-10-3-1-2-4-11(10)12/h1-4,8-9,12-13,15-16,19,25-27H,5-7H2,(H,20,21,23)/t12-,13-,15-,16-,19-/m1/s1" T9I InChIKey InChI 1.06 FSKMJUWPFLDDRS-BYMDKACISA-N T9I SMILES_CANONICAL CACTVS 3.385 "OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N[C@@H]4CCc5ccccc45)ncnc23" T9I SMILES CACTVS 3.385 "OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N[CH]4CCc5ccccc45)ncnc23" T9I SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CC[C@H]2Nc3c4c(ncn3)n(cn4)[C@H]5[C@@H]([C@@H]([C@H](O5)CO)O)O" T9I SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CCC2Nc3c4c(ncn3)n(cn4)C5C(C(C(O5)CO)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier T9I "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1R)-2,3-dihydro-1H-inden-1-yl]adenosine" T9I "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{S},5~{R})-2-[6-[[(1~{R})-2,3-dihydro-1~{H}-inden-1-yl]amino]purin-9-yl]-5-(hydroxymethyl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T9I "Create component" 2022-07-20 RCSB T9I "Initial release" 2023-01-11 RCSB #