data_T9L # _chem_comp.id T9L _chem_comp.name "(1,3-dimethylimidazol-1-ium-2-yl)-tetrakis(oxidanyl)ruthenium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H12 N2 O4 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2023-01-04 _chem_comp.pdbx_modified_date 2024-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 265.230 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T9L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8C3B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T9L O3 O1 O 0 1 N N N N N N -44.719 25.849 1.741 -0.923 1.768 0.496 O3 T9L 1 T9L O4 O2 O 0 1 N N N N N N -45.995 23.928 3.347 -0.923 -0.463 -1.780 O4 T9L 2 T9L RU RU1 RU 0 0 N N N N N N -44.259 24.153 1.969 -0.921 -0.004 0.002 RU T9L 3 T9L O1 O3 O 0 1 N N N N N N -43.598 22.140 2.311 -0.917 -1.318 1.290 O1 T9L 4 T9L O2 O4 O 0 1 N N N N N N -42.938 24.883 3.607 -2.761 -0.007 0.005 O2 T9L 5 T9L C33 C1 C 0 1 N N N N N N -45.037 25.355 -1.032 1.377 -2.466 -0.025 C33 T9L 6 T9L N4 N1 N 0 1 Y N N N N N -45.662 24.251 -0.669 1.841 -1.076 -0.013 N4 T9L 7 T9L C29 C2 C 0 1 Y N N N N N -45.446 23.471 0.390 1.069 -0.001 -0.001 C29 T9L 8 T9L C32 C3 C 0 1 Y N N N N N -46.658 23.726 -1.381 3.128 -0.672 -0.006 C32 T9L 9 T9L C31 C4 C 0 1 Y N N N N N -47.018 22.644 -0.735 3.126 0.676 0.005 C31 T9L 10 T9L N3 N2 N 1 1 Y N N N N N -46.302 22.428 0.427 1.838 1.076 0.008 N3 T9L 11 T9L C30 C5 C 0 1 N N N N N N -46.468 21.389 1.253 1.370 2.464 0.022 C30 T9L 12 T9L H1 H1 H 0 1 N N N N N N -44.276 26.387 2.386 -1.694 2.262 0.185 H1 T9L 13 T9L H2 H2 H 0 1 N N N N N N -45.739 24.187 4.224 -0.925 0.295 -2.381 H2 T9L 14 T9L H3 H3 H 0 1 N N N N N N -42.989 22.126 3.040 -0.916 -0.980 2.196 H3 T9L 15 T9L H4 H4 H 0 1 N N N N N N -43.439 24.953 4.411 -3.153 -0.858 -0.232 H4 T9L 16 T9L H5 H5 H 0 1 N N N N N N -44.257 25.595 -0.295 1.260 -2.801 -1.056 H5 T9L 17 T9L H6 H6 H 0 1 N N N N N N -44.575 25.207 -2.019 2.108 -3.097 0.481 H6 T9L 18 T9L H7 H7 H 0 1 N N N N N N -45.758 26.184 -1.085 0.419 -2.534 0.490 H7 T9L 19 T9L H8 H8 H 0 1 N N N N N N -47.080 24.111 -2.298 3.999 -1.311 -0.012 H8 T9L 20 T9L H9 H9 H 0 1 N N N N N N -47.800 21.983 -1.078 3.996 1.317 0.013 H9 T9L 21 T9L H10 H10 H 0 1 N N N N N N -45.765 21.473 2.095 1.141 2.760 1.046 H10 T9L 22 T9L H11 H11 H 0 1 N N N N N N -47.499 21.386 1.635 2.149 3.114 -0.378 H11 T9L 23 T9L H12 H12 H 0 1 N N N N N N -46.276 20.453 0.708 0.473 2.552 -0.591 H12 T9L 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T9L C32 C31 DOUB Y N 1 T9L C32 N4 SING Y N 2 T9L C33 N4 SING N N 3 T9L C31 N3 SING Y N 4 T9L N4 C29 SING Y N 5 T9L C29 N3 DOUB Y N 6 T9L C29 RU SING N N 7 T9L N3 C30 SING N N 8 T9L O3 RU SING N N 9 T9L RU O1 SING N N 10 T9L RU O4 SING N N 11 T9L RU O2 SING N N 12 T9L O3 H1 SING N N 13 T9L O4 H2 SING N N 14 T9L O1 H3 SING N N 15 T9L O2 H4 SING N N 16 T9L C33 H5 SING N N 17 T9L C33 H6 SING N N 18 T9L C33 H7 SING N N 19 T9L C32 H8 SING N N 20 T9L C31 H9 SING N N 21 T9L C30 H10 SING N N 22 T9L C30 H11 SING N N 23 T9L C30 H12 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T9L InChI InChI 1.06 "InChI=1S/C5H8N2.4H2O.Ru/c1-6-3-4-7(2)5-6;;;;;/h3-4H,1-2H3;4*1H2;/q+1;;;;;+4/p-4" T9L InChIKey InChI 1.06 GBFAIMOOTSOZCZ-UHFFFAOYSA-J T9L SMILES_CANONICAL CACTVS 3.385 "Cn1cc[n+](C)c1[Ru](O)(O)(O)O" T9L SMILES CACTVS 3.385 "Cn1cc[n+](C)c1[Ru](O)(O)(O)O" T9L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cn1cc[n+](c1[Ru](O)(O)(O)O)C" T9L SMILES "OpenEye OEToolkits" 2.0.7 "Cn1cc[n+](c1[Ru](O)(O)(O)O)C" # _pdbx_chem_comp_identifier.comp_id T9L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1,3-dimethylimidazol-1-ium-2-yl)-tetrakis(oxidanyl)ruthenium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T9L "Create component" 2023-01-04 PDBE T9L "Initial release" 2024-01-10 RCSB #