data_T9U # _chem_comp.id T9U _chem_comp.name "(1,3-dimethyl-2~{H}-imidazol-2-yl)-oxidanyl-oxidanylidene-ruthenium" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H10 N2 O2 Ru" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-01-04 _chem_comp.pdbx_modified_date 2024-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 231.215 _chem_comp.one_letter_code ? _chem_comp.three_letter_code T9U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8C3B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal T9U C29 C1 C 0 1 N N N N N N -47.068 5.002 -7.827 0.839 -0.135 -0.679 C29 T9U 1 T9U C30 C2 C 0 1 N N N N N N -45.841 6.682 -9.165 1.007 -2.696 -0.126 C30 T9U 2 T9U C31 C3 C 0 1 N N N N N N -47.607 7.057 -7.575 2.598 -0.837 0.633 C31 T9U 3 T9U C32 C4 C 0 1 N N N N N N -48.378 6.355 -6.779 2.727 0.465 0.497 C32 T9U 4 T9U C33 C5 C 0 1 N N N N N N -48.741 4.210 -6.193 1.512 2.401 -0.658 C33 T9U 5 T9U O1 O1 O 0 1 N N N N N N -44.435 2.233 -6.219 -2.300 -1.144 -0.312 O1 T9U 6 T9U O2 O2 O 0 1 N N N N N N -46.764 3.527 -5.426 -1.360 1.413 0.866 O2 T9U 7 T9U RU RU1 RU 0 0 N N N N N N -45.747 3.606 -6.986 -1.006 0.120 0.022 RU T9U 8 T9U N4 N1 N 0 1 N N N N N N -48.062 5.070 -6.929 1.697 0.995 -0.291 N4 T9U 9 T9U N3 N2 N 0 1 N N N N N N -46.746 6.241 -8.280 1.469 -1.308 -0.051 N3 T9U 10 T9U H1 H1 H 0 1 N N N N N N -47.448 4.434 -8.689 0.822 -0.246 -1.763 H1 T9U 11 T9U H2 H2 H 0 1 N N N N N N -45.908 7.777 -9.244 1.463 -3.184 -0.987 H2 T9U 12 T9U H3 H3 H 0 1 N N N N N N -44.832 6.399 -8.829 1.291 -3.223 0.785 H3 T9U 13 T9U H4 H4 H 0 1 N N N N N N -46.040 6.231 -10.148 -0.078 -2.712 -0.231 H4 T9U 14 T9U H5 H5 H 0 1 N N N N N N -47.642 8.133 -7.667 3.273 -1.462 1.199 H5 T9U 15 T9U H6 H6 H 0 1 N N N N N N -49.136 6.750 -6.118 3.522 1.049 0.936 H6 T9U 16 T9U H7 H7 H 0 1 N N N N N N -49.484 4.751 -5.588 0.895 2.895 0.093 H7 T9U 17 T9U H8 H8 H 0 1 N N N N N N -49.255 3.492 -6.849 2.483 2.894 -0.712 H8 T9U 18 T9U H9 H9 H 0 1 N N N N N N -48.050 3.670 -5.529 1.020 2.461 -1.629 H9 T9U 19 T9U H10 H10 H 0 1 N N N N N N -44.716 1.978 -5.348 -3.164 -0.933 0.069 H10 T9U 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal T9U C30 N3 SING N N 1 T9U N3 C29 SING N N 2 T9U N3 C31 SING N N 3 T9U C29 RU SING N N 4 T9U C29 N4 SING N N 5 T9U C31 C32 DOUB N N 6 T9U RU O1 SING N N 7 T9U RU O2 DOUB N N 8 T9U N4 C32 SING N N 9 T9U N4 C33 SING N N 10 T9U C29 H1 SING N N 11 T9U C30 H2 SING N N 12 T9U C30 H3 SING N N 13 T9U C30 H4 SING N N 14 T9U C31 H5 SING N N 15 T9U C32 H6 SING N N 16 T9U C33 H7 SING N N 17 T9U C33 H8 SING N N 18 T9U C33 H9 SING N N 19 T9U O1 H10 SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor T9U InChI InChI 1.06 "InChI=1S/C5H9N2.H2O.O.Ru/c1-6-3-4-7(2)5-6;;;/h3-5H,1-2H3;1H2;;/q;;;+1/p-1" T9U InChIKey InChI 1.06 DEXKHQIKGXONQU-UHFFFAOYSA-M T9U SMILES_CANONICAL CACTVS 3.385 "CN1C=CN(C)C1[Ru](O)=O" T9U SMILES CACTVS 3.385 "CN1C=CN(C)C1[Ru](O)=O" T9U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1C=CN(C1[Ru](=O)O)C" T9U SMILES "OpenEye OEToolkits" 2.0.7 "CN1C=CN(C1[Ru](=O)O)C" # _pdbx_chem_comp_identifier.comp_id T9U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(1,3-dimethyl-2~{H}-imidazol-2-yl)-oxidanyl-oxidanylidene-ruthenium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site T9U "Create component" 2023-01-04 PDBE T9U "Initial release" 2024-01-10 RCSB #