data_TA3 # _chem_comp.id TA3 _chem_comp.name "(4S,5R)-3-(2-DEOXY-5-O-PHOSPHONO-BETA-D-ERYTHRO-PENTOFURANOSYL)-5-METHYL-1,3-DIAZABICYCLO[2.2.0]HEXAN-2-ONE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H17 N2 O7 P" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2006-10-16 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 308.225 _chem_comp.one_letter_code T _chem_comp.three_letter_code TA3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1QKG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TA3 OP3 O3P O 0 1 N Y N -1.639 0.205 24.732 ? ? ? OP3 TA3 1 TA3 P P P 0 1 N N N -2.059 -0.970 25.752 ? ? ? P TA3 2 TA3 OP1 O1P O 0 1 N N N -1.880 -0.497 27.144 ? ? ? OP1 TA3 3 TA3 OP2 O2P O 0 1 N N N -1.359 -2.210 25.347 ? ? ? OP2 TA3 4 TA3 "O5'" O5* O 0 1 N N N -3.630 -1.148 25.461 ? ? ? "O5'" TA3 5 TA3 "C5'" C5* C 0 1 N N N -4.753 -0.280 25.749 ? ? ? "C5'" TA3 6 TA3 "C4'" C4* C 0 1 N N R -6.099 -0.804 25.200 ? ? ? "C4'" TA3 7 TA3 "O4'" O4* O 0 1 N N N -6.039 -0.968 23.758 ? ? ? "O4'" TA3 8 TA3 "C3'" C3* C 0 1 N N S -6.507 -2.150 25.745 ? ? ? "C3'" TA3 9 TA3 "O3'" O3* O 0 1 N N N -7.939 -2.248 25.875 ? ? ? "O3'" TA3 10 TA3 "C2'" C2* C 0 1 N N N -5.985 -3.099 24.711 ? ? ? "C2'" TA3 11 TA3 "C1'" C1* C 0 1 N N R -6.330 -2.329 23.446 ? ? ? "C1'" TA3 12 TA3 N1 N1 N 0 1 N N N -5.518 -2.822 22.279 ? ? ? N1 TA3 13 TA3 C2 C2 C 0 1 N N N -5.610 -2.132 21.045 ? ? ? C2 TA3 14 TA3 O2 O2 O 0 1 N N N -6.386 -2.307 20.098 ? ? ? O2 TA3 15 TA3 N3 N3 N 0 1 N N N -4.384 -1.344 21.382 ? ? ? N3 TA3 16 TA3 C4 C4 C 0 1 N N N -3.016 -1.578 20.819 ? ? ? C4 TA3 17 TA3 C5 C5 C 0 1 N N R -3.079 -2.907 21.155 ? ? ? C5 TA3 18 TA3 C5M C5M C 0 1 N N N -2.194 -4.058 21.011 ? ? ? C5M TA3 19 TA3 C6 C6 C 0 1 N N S -4.019 -2.526 22.329 ? ? ? C6 TA3 20 TA3 HO1P HO1P H 0 0 N N N -1.842 -1.244 27.730 ? ? ? HO1P TA3 21 TA3 HO2P HO2P H 0 0 N N N -1.209 -2.198 24.409 ? ? ? HO2P TA3 22 TA3 "H5'" 1H5* H 0 1 N N N -4.555 0.699 25.289 ? ? ? "H5'" TA3 23 TA3 "H5''" 2H5* H 0 0 N N N -4.848 -0.226 26.844 ? ? ? "H5''" TA3 24 TA3 "H4'" H4* H 0 1 N N N -6.830 -0.045 25.515 ? ? ? "H4'" TA3 25 TA3 "H3'" H3* H 0 1 N N N -6.114 -2.350 26.753 ? ? ? "H3'" TA3 26 TA3 "HO3'" HO3* H 0 0 N Y N -8.173 -2.270 26.795 ? ? ? "HO3'" TA3 27 TA3 "H2'" 1H2* H 0 1 N N N -6.471 -4.085 24.755 ? ? ? "H2'" TA3 28 TA3 "H2''" 2H2* H 0 0 N N N -4.920 -3.354 24.817 ? ? ? "H2''" TA3 29 TA3 "H1'" H1* H 0 1 N N N -7.381 -2.459 23.148 ? ? ? "H1'" TA3 30 TA3 H41 1H4 H 0 1 N N N -2.198 -1.001 21.275 ? ? ? H41 TA3 31 TA3 H42 2H4 H 0 1 N N N -2.799 -1.290 19.780 ? ? ? H42 TA3 32 TA3 H5 H5 H 0 1 N N N -3.165 -3.693 20.391 ? ? ? H5 TA3 33 TA3 H71 1H5M H 0 1 N N N -1.971 -4.219 19.946 ? ? ? H71 TA3 34 TA3 H72 2H5M H 0 1 N N N -1.258 -3.871 21.557 ? ? ? H72 TA3 35 TA3 H73 3H5M H 0 1 N N N -2.686 -4.952 21.422 ? ? ? H73 TA3 36 TA3 H6 H6 H 0 1 N N N -3.589 -2.752 23.316 ? ? ? H6 TA3 37 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TA3 OP3 P DOUB N N 1 TA3 P OP2 SING N N 2 TA3 P "O5'" SING N N 3 TA3 P OP1 SING N N 4 TA3 OP1 HO1P SING N N 5 TA3 OP2 HO2P SING N N 6 TA3 "O5'" "C5'" SING N N 7 TA3 "C5'" "C4'" SING N N 8 TA3 "C5'" "H5'" SING N N 9 TA3 "C5'" "H5''" SING N N 10 TA3 "C4'" "O4'" SING N N 11 TA3 "C4'" "C3'" SING N N 12 TA3 "C4'" "H4'" SING N N 13 TA3 "O4'" "C1'" SING N N 14 TA3 "C3'" "C2'" SING N N 15 TA3 "C3'" "O3'" SING N N 16 TA3 "C3'" "H3'" SING N N 17 TA3 "O3'" "HO3'" SING N N 18 TA3 "C2'" "C1'" SING N N 19 TA3 "C2'" "H2'" SING N N 20 TA3 "C2'" "H2''" SING N N 21 TA3 "C1'" N1 SING N N 22 TA3 "C1'" "H1'" SING N N 23 TA3 N1 C2 SING N N 24 TA3 N1 C6 SING N N 25 TA3 C2 O2 DOUB N N 26 TA3 C2 N3 SING N N 27 TA3 N3 C4 SING N N 28 TA3 N3 C6 SING N N 29 TA3 C4 C5 SING N N 30 TA3 C4 H41 SING N N 31 TA3 C4 H42 SING N N 32 TA3 C5 C5M SING N N 33 TA3 C5 C6 SING N N 34 TA3 C5 H5 SING N N 35 TA3 C5M H71 SING N N 36 TA3 C5M H72 SING N N 37 TA3 C5M H73 SING N N 38 TA3 C6 H6 SING N N 39 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TA3 SMILES ACDLabs 10.04 "O=C2N1CC(C1N2C3OC(C(O)C3)COP(=O)(O)O)C" TA3 SMILES_CANONICAL CACTVS 3.341 "C[C@@H]1CN2[C@H]1N([C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3)C2=O" TA3 SMILES CACTVS 3.341 "C[CH]1CN2[CH]1N([CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3)C2=O" TA3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@@H]1CN2[C@H]1N(C2=O)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O" TA3 SMILES "OpenEye OEToolkits" 1.5.0 "CC1CN2C1N(C2=O)C3CC(C(O3)COP(=O)(O)O)O" TA3 InChI InChI 1.03 "InChI=1S/C10H17N2O7P/c1-5-3-11-9(5)12(10(11)14)8-2-6(13)7(19-8)4-18-20(15,16)17/h5-9,13H,2-4H2,1H3,(H2,15,16,17)/t5-,6+,7-,8-,9+/m1/s1" TA3 InChIKey InChI 1.03 TXQJFYDCAIBOMW-WUNNTHRKSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TA3 "SYSTEMATIC NAME" ACDLabs 10.04 "(4S,5R)-3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-5-methyl-1,3-diazabicyclo[2.2.0]hexan-2-one" TA3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-[(3R,4S)-3-methyl-6-oxo-1,5-diazabicyclo[2.2.0]hexan-5-yl]oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TA3 "Create component" 2006-10-16 RCSB TA3 "Modify descriptor" 2011-06-04 RCSB ##