data_TAF # _chem_comp.id TAF _chem_comp.name ;2'-DEOXY-2'-FLUORO-ARABINO-FURANOSYL THYMINE-5'-PHOSPHATE ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 F N2 O8 P" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 340.199 _chem_comp.one_letter_code T _chem_comp.three_letter_code TAF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DPN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TAF P P P 0 1 N N N 16.567 -6.604 20.853 1.102 -0.016 -4.239 P TAF 1 TAF OP1 O1P O 0 1 N N N 17.890 -6.814 20.163 2.366 -0.833 -4.812 OP1 TAF 2 TAF OP2 O2P O 0 1 N N N 15.972 -7.648 21.693 -0.047 0.049 -5.363 OP2 TAF 3 TAF OP3 O3P O 0 1 N Y N 15.540 -6.189 19.682 1.523 1.356 -3.882 OP3 TAF 4 TAF "O5'" O5* O 0 1 N N N 16.628 -5.295 21.783 0.531 -0.760 -2.930 "O5'" TAF 5 TAF N1 N1 N 0 1 N N N 13.841 -2.402 24.115 -0.168 -0.411 2.211 N1 TAF 6 TAF C6 C6 C 0 1 N N N 13.234 -3.641 24.088 0.057 -1.284 3.240 C6 TAF 7 TAF C2 C2 C 0 1 N N N 13.160 -1.295 24.577 0.328 0.838 2.251 C2 TAF 8 TAF O2 O2 O 0 1 N N N 13.645 -0.190 24.633 0.114 1.598 1.326 O2 TAF 9 TAF N3 N3 N 0 1 N N N 11.864 -1.536 24.932 1.056 1.260 3.301 N3 TAF 10 TAF C4 C4 C 0 1 N N N 11.186 -2.728 24.884 1.298 0.431 4.337 C4 TAF 11 TAF O4 O4 O 0 1 N N N 10.018 -2.755 25.226 1.957 0.811 5.288 O4 TAF 12 TAF C5 C5 C 0 1 N N N 11.968 -3.867 24.466 0.786 -0.888 4.305 C5 TAF 13 TAF C5M C5M C 0 1 N N N 11.296 -5.212 24.440 1.044 -1.835 5.448 C5M TAF 14 TAF "F2'" F2* F 0 1 N N N 15.859 -3.761 25.214 -1.958 1.327 1.453 "F2'" TAF 15 TAF "C2'" C2* C 0 1 N N S 16.330 -2.704 24.518 -2.188 0.075 0.873 "C2'" TAF 16 TAF "C5'" C5* C 0 1 N N N 16.993 -4.049 21.138 -0.582 0.008 -2.471 "C5'" TAF 17 TAF "C4'" C4* C 0 1 N N R 16.727 -2.952 22.138 -1.174 -0.647 -1.222 "C4'" TAF 18 TAF "O4'" O4* O 0 1 N N N 15.321 -2.930 22.376 -0.195 -0.684 -0.161 "O4'" TAF 19 TAF "C1'" C1* C 0 1 N N R 15.262 -2.194 23.727 -0.958 -0.841 1.054 "C1'" TAF 20 TAF "C3'" C3* C 0 1 N N R 17.377 -3.116 23.520 -2.332 0.207 -0.661 "C3'" TAF 21 TAF "O3'" O3* O 0 1 N N N 18.543 -2.304 23.529 -3.592 -0.310 -1.093 "O3'" TAF 22 TAF HOP1 1HOP H 0 0 N N N 18.275 -6.137 19.618 2.677 -0.356 -5.593 HOP1 TAF 23 TAF HOP2 2HOP H 0 0 N N N 15.137 -7.515 22.128 -0.293 -0.863 -5.567 HOP2 TAF 24 TAF H6 H6 H 0 1 N N N 13.804 -4.517 23.737 -0.344 -2.286 3.199 H6 TAF 25 TAF H3 H3 H 0 1 N N N 11.340 -0.730 25.273 1.407 2.164 3.315 H3 TAF 26 TAF H71 1H5M H 0 1 N N N 10.242 -5.400 24.754 1.646 -1.334 6.207 H71 TAF 27 TAF H72 2H5M H 0 1 N N N 11.398 -5.604 23.401 0.095 -2.146 5.885 H72 TAF 28 TAF H73 3H5M H 0 1 N N N 11.938 -5.906 25.030 1.579 -2.711 5.080 H73 TAF 29 TAF "H2'" H2* H 0 1 N N N 16.749 -1.976 25.251 -3.078 -0.385 1.301 "H2'" TAF 30 TAF "H5'" 1H5* H 0 1 N N N 18.037 -4.044 20.746 -1.340 0.052 -3.253 "H5'" TAF 31 TAF "H5''" 2H5* H 0 0 N N N 16.477 -3.890 20.162 -0.251 1.018 -2.229 "H5''" TAF 32 TAF "H4'" H4* H 0 1 N N N 17.161 -2.030 21.684 -1.523 -1.654 -1.452 "H4'" TAF 33 TAF "H1'" H1* H 0 1 N N N 15.449 -1.097 23.795 -1.272 -1.878 1.174 "H1'" TAF 34 TAF "H3'" H3* H 0 1 N N N 17.702 -4.152 23.770 -2.222 1.247 -0.968 "H3'" TAF 35 TAF "HO'3" 3HO* H 0 0 N N N 19.204 -2.564 22.898 -4.274 0.260 -0.713 "HO'3" TAF 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TAF P OP1 SING N N 1 TAF P OP2 SING N N 2 TAF P OP3 DOUB N N 3 TAF P "O5'" SING N N 4 TAF OP1 HOP1 SING N N 5 TAF OP2 HOP2 SING N N 6 TAF "O5'" "C5'" SING N N 7 TAF N1 C6 SING N N 8 TAF N1 C2 SING N N 9 TAF N1 "C1'" SING N N 10 TAF C6 C5 DOUB N N 11 TAF C6 H6 SING N N 12 TAF C2 O2 DOUB N N 13 TAF C2 N3 SING N N 14 TAF N3 C4 SING N N 15 TAF N3 H3 SING N N 16 TAF C4 O4 DOUB N N 17 TAF C4 C5 SING N N 18 TAF C5 C5M SING N N 19 TAF C5M H71 SING N N 20 TAF C5M H72 SING N N 21 TAF C5M H73 SING N N 22 TAF "F2'" "C2'" SING N N 23 TAF "C2'" "C1'" SING N N 24 TAF "C2'" "C3'" SING N N 25 TAF "C2'" "H2'" SING N N 26 TAF "C5'" "C4'" SING N N 27 TAF "C5'" "H5'" SING N N 28 TAF "C5'" "H5''" SING N N 29 TAF "C4'" "O4'" SING N N 30 TAF "C4'" "C3'" SING N N 31 TAF "C4'" "H4'" SING N N 32 TAF "O4'" "C1'" SING N N 33 TAF "C1'" "H1'" SING N N 34 TAF "C3'" "O3'" SING N N 35 TAF "C3'" "H3'" SING N N 36 TAF "O3'" "HO'3" SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TAF SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(O)C2F)COP(=O)(O)O" TAF SMILES_CANONICAL CACTVS 3.341 "CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@@H]2F)C(=O)NC1=O" TAF SMILES CACTVS 3.341 "CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2F)C(=O)NC1=O" TAF SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2[C@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)F" TAF SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)F" TAF InChI InChI 1.03 "InChI=1S/C10H14FN2O8P/c1-4-2-13(10(16)12-8(4)15)9-6(11)7(14)5(21-9)3-20-22(17,18)19/h2,5-7,9,14H,3H2,1H3,(H,12,15,16)(H2,17,18,19)/t5-,6+,7-,9-/m1/s1" TAF InChIKey InChI 1.03 XJQFIHYTCPKUTK-JVZYCSMKSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TAF "SYSTEMATIC NAME" ACDLabs 10.04 "1-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-5-methylpyrimidine-2,4(1H,3H)-dione" TAF "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4S,5R)-4-fluoro-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TAF "Create component" 1999-07-08 RCSB TAF "Modify descriptor" 2011-06-04 RCSB #