data_TBJ # _chem_comp.id TBJ _chem_comp.name "N-cyclopentyl-N'-{[(2R)-oxolan-2-yl]methyl}urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H20 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-19 _chem_comp.pdbx_modified_date 2020-05-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 212.289 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TBJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RCG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TBJ C4 C1 C 0 1 N N N 23.264 7.225 55.241 4.097 0.190 1.110 C4 TBJ 1 TBJ C5 C2 C 0 1 N N N 24.326 3.784 55.589 0.595 0.669 0.049 C5 TBJ 2 TBJ C6 C3 C 0 1 N N N 24.075 1.397 55.879 -1.830 0.883 -0.039 C6 TBJ 3 TBJ N1 N1 N 0 1 N N N 23.956 2.768 56.370 -0.613 0.234 0.455 N1 TBJ 4 TBJ C7 C4 C 0 1 N N R 24.102 0.270 56.886 -3.056 0.202 0.573 C7 TBJ 5 TBJ C8 C5 C 0 1 N N N 23.267 0.504 58.129 -4.342 0.878 0.059 C8 TBJ 6 TBJ C9 C6 C 0 1 N N N 22.004 -0.319 57.948 -5.126 -0.268 -0.625 C9 TBJ 7 TBJ C10 C7 C 0 1 N N N 22.129 -0.855 56.541 -4.499 -1.526 0.028 C10 TBJ 8 TBJ O O1 O 0 1 N N N 24.871 3.582 54.516 0.676 1.601 -0.728 O TBJ 9 TBJ N N2 N 0 1 N N N 24.080 5.038 56.058 1.715 0.072 0.503 N TBJ 10 TBJ C3 C8 C 0 1 N N N 24.421 6.243 55.304 3.029 0.545 0.061 C3 TBJ 11 TBJ C2 C9 C 0 1 N N N 25.448 7.110 55.985 3.437 -0.170 -1.243 C2 TBJ 12 TBJ C1 C10 C 0 1 N N N 25.335 8.449 55.264 4.322 -1.349 -0.769 C1 TBJ 13 TBJ C C11 C 0 1 N N N 23.899 8.520 54.782 5.117 -0.728 0.407 C TBJ 14 TBJ O1 O2 O 0 1 N N N 23.528 -0.881 56.257 -3.105 -1.176 0.163 O1 TBJ 15 TBJ H1 H1 H 0 1 N N N 22.802 7.347 56.232 4.591 1.096 1.462 H1 TBJ 16 TBJ H2 H2 H 0 1 N N N 22.504 6.887 54.521 3.638 -0.333 1.948 H2 TBJ 17 TBJ H3 H3 H 0 1 N N N 23.220 1.216 55.212 -1.821 1.936 0.244 H3 TBJ 18 TBJ H4 H4 H 0 1 N N N 25.009 1.339 55.301 -1.872 0.799 -1.125 H4 TBJ 19 TBJ H5 H5 H 0 1 N N N 23.599 2.944 57.287 -0.678 -0.510 1.075 H5 TBJ 20 TBJ H6 H6 H 0 1 N N N 25.143 0.069 57.180 -3.012 0.266 1.660 H6 TBJ 21 TBJ H7 H7 H 0 1 N N N 23.814 0.173 59.024 -4.915 1.289 0.890 H7 TBJ 22 TBJ H8 H8 H 0 1 N N N 23.017 1.571 58.226 -4.101 1.660 -0.660 H8 TBJ 23 TBJ H9 H9 H 0 1 N N N 21.107 0.310 58.051 -6.190 -0.201 -0.397 H9 TBJ 24 TBJ H10 H10 H 0 1 N N N 21.962 -1.140 58.679 -4.960 -0.264 -1.702 H10 TBJ 25 TBJ H11 H11 H 0 1 N N N 21.607 -0.196 55.832 -4.944 -1.714 1.005 H11 TBJ 26 TBJ H12 H12 H 0 1 N N N 21.707 -1.869 56.478 -4.618 -2.395 -0.620 H12 TBJ 27 TBJ H13 H13 H 0 1 N N N 23.649 5.139 56.954 1.650 -0.672 1.122 H13 TBJ 28 TBJ H14 H14 H 0 1 N N N 24.754 5.987 54.287 3.004 1.623 -0.097 H14 TBJ 29 TBJ H15 H15 H 0 1 N N N 26.457 6.687 55.868 2.556 -0.541 -1.767 H15 TBJ 30 TBJ H16 H16 H 0 1 N N N 25.219 7.221 57.055 4.006 0.502 -1.885 H16 TBJ 31 TBJ H17 H17 H 0 1 N N N 26.030 8.489 54.413 3.707 -2.180 -0.423 H17 TBJ 32 TBJ H18 H18 H 0 1 N N N 25.552 9.278 55.954 4.993 -1.673 -1.564 H18 TBJ 33 TBJ H19 H19 H 0 1 N N N 23.863 8.600 53.686 5.960 -0.147 0.032 H19 TBJ 34 TBJ H20 H20 H 0 1 N N N 23.384 9.383 55.230 5.463 -1.507 1.087 H20 TBJ 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TBJ O C5 DOUB N N 1 TBJ C C4 SING N N 2 TBJ C C1 SING N N 3 TBJ C4 C3 SING N N 4 TBJ C1 C2 SING N N 5 TBJ C3 C2 SING N N 6 TBJ C3 N SING N N 7 TBJ C5 N SING N N 8 TBJ C5 N1 SING N N 9 TBJ C6 N1 SING N N 10 TBJ C6 C7 SING N N 11 TBJ O1 C10 SING N N 12 TBJ O1 C7 SING N N 13 TBJ C10 C9 SING N N 14 TBJ C7 C8 SING N N 15 TBJ C9 C8 SING N N 16 TBJ C4 H1 SING N N 17 TBJ C4 H2 SING N N 18 TBJ C6 H3 SING N N 19 TBJ C6 H4 SING N N 20 TBJ N1 H5 SING N N 21 TBJ C7 H6 SING N N 22 TBJ C8 H7 SING N N 23 TBJ C8 H8 SING N N 24 TBJ C9 H9 SING N N 25 TBJ C9 H10 SING N N 26 TBJ C10 H11 SING N N 27 TBJ C10 H12 SING N N 28 TBJ N H13 SING N N 29 TBJ C3 H14 SING N N 30 TBJ C2 H15 SING N N 31 TBJ C2 H16 SING N N 32 TBJ C1 H17 SING N N 33 TBJ C1 H18 SING N N 34 TBJ C H19 SING N N 35 TBJ C H20 SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TBJ SMILES ACDLabs 12.01 "C2C(NC(NCC1CCCO1)=O)CCC2" TBJ InChI InChI 1.03 "InChI=1S/C11H20N2O2/c14-11(13-9-4-1-2-5-9)12-8-10-6-3-7-15-10/h9-10H,1-8H2,(H2,12,13,14)/t10-/m1/s1" TBJ InChIKey InChI 1.03 GZCFMEFTVSKHDE-SNVBAGLBSA-N TBJ SMILES_CANONICAL CACTVS 3.385 "O=C(NC[C@H]1CCCO1)NC2CCCC2" TBJ SMILES CACTVS 3.385 "O=C(NC[CH]1CCCO1)NC2CCCC2" TBJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCC(C1)NC(=O)NC[C@H]2CCCO2" TBJ SMILES "OpenEye OEToolkits" 2.0.7 "C1CCC(C1)NC(=O)NCC2CCCO2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TBJ "SYSTEMATIC NAME" ACDLabs 12.01 "N-cyclopentyl-N'-{[(2R)-oxolan-2-yl]methyl}urea" TBJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-cyclopentyl-3-[[(2~{R})-oxolan-2-yl]methyl]urea" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TBJ "Create component" 2020-03-19 RCSB TBJ "Initial release" 2020-06-03 RCSB ##