data_TBV # _chem_comp.id TBV _chem_comp.name ;3-[2-[[3-(2-CARBOXYETHYL)-5-[[3-ETHENYL-4-METHYL-5-[(2-METHYLPROPAN-2-YL)OXY]-1H-PYRROL-2-YL]METHYL]-4-METHYL-1H-PYRROL -2-YL]METHYL]-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXO-PYRROL-2-YLIDENE)METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC ACID ; _chem_comp.type non-polymer _chem_comp.pdbx_type ? _chem_comp.formula "C37 H46 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms BILIVERDIN _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-03-19 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 642.784 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TBV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2WD4 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TBV CHA CHA C 0 1 N N N 13.541 57.644 20.348 -0.600 1.097 -1.276 CHA TBV 1 TBV CHB CHB C 0 1 N N N 12.738 55.077 16.271 -5.001 0.850 1.061 CHB TBV 2 TBV CHD CHD C 0 1 N N N 16.997 54.432 21.550 3.529 0.372 1.584 CHD TBV 3 TBV NA NA N 0 1 Y N N 13.428 56.130 18.417 -2.889 0.673 -0.240 NA TBV 4 TBV C1A C1A C 0 1 Y N N 13.079 57.283 19.021 -1.779 1.439 -0.402 C1A TBV 5 TBV C2A C2A C 0 1 Y N N 12.002 58.036 18.363 -1.904 2.560 0.351 C2A TBV 6 TBV C3A C3A C 0 1 Y N N 11.754 57.274 17.142 -3.133 2.502 1.011 C3A TBV 7 TBV C4A C4A C 0 1 Y N N 12.706 56.151 17.273 -3.742 1.315 0.633 C4A TBV 8 TBV CAA CAA C 0 1 N N N 11.364 59.319 18.803 -0.893 3.673 0.457 CAA TBV 9 TBV CBA CBA C 0 1 N N N 12.243 60.510 18.460 -1.177 4.725 -0.617 CBA TBV 10 TBV CGA CGA C 0 1 N N N 11.514 61.711 18.999 -0.166 5.837 -0.511 CGA TBV 11 TBV O1A O1A O 0 1 N N N 12.014 62.328 19.961 0.694 5.793 0.337 O1A TBV 12 TBV O2A O2A O 0 1 N N N 10.417 62.035 18.484 -0.221 6.877 -1.358 O2A TBV 13 TBV CMA CMA C 0 1 N N N 10.790 57.569 16.017 -3.692 3.535 1.955 CMA TBV 14 TBV NB NB N 0 1 N N N 14.072 53.482 17.567 -5.189 -0.734 -0.819 NB TBV 15 TBV C1B C1B C 0 1 N N N 13.358 53.764 16.463 -5.639 -0.161 0.365 C1B TBV 16 TBV C2B C2B C 0 1 N N N 13.305 52.697 15.444 -6.844 -0.773 0.739 C2B TBV 17 TBV C3B C3B C 0 1 N N N 14.086 51.637 16.092 -7.140 -1.730 -0.221 C3B TBV 18 TBV C4B C4B C 0 1 N N N 14.480 52.211 17.391 -6.061 -1.684 -1.209 C4B TBV 19 TBV CMB CMB C 0 1 N N N 12.614 52.713 14.114 -7.667 -0.450 1.959 CMB TBV 20 TBV CAB CAB C 0 1 N N N 14.392 50.288 15.567 -8.314 -2.621 -0.241 CAB TBV 21 TBV CBB CBB C 0 1 N N N 14.321 49.258 16.391 -8.467 -3.496 -1.230 CBB TBV 22 TBV NC NC N 0 1 Y N N 16.713 53.808 19.152 5.433 -1.052 0.641 NC TBV 23 TBV C1C C1C C 0 1 Y N N 17.321 52.862 18.367 6.450 -0.931 -0.259 C1C TBV 24 TBV C2C C2C C 0 1 Y N N 18.334 51.996 19.038 6.416 0.312 -0.789 C2C TBV 25 TBV C3C C3C C 0 1 Y N N 18.301 52.559 20.397 5.286 1.003 -0.161 C3C TBV 26 TBV C4C C4C C 0 1 Y N N 17.304 53.635 20.363 4.726 0.113 0.705 C4C TBV 27 TBV CMC CMC C 0 1 N N N 19.168 50.870 18.477 7.355 0.877 -1.824 CMC TBV 28 TBV CAC CAC C 0 1 N N N 19.083 52.199 21.607 4.844 2.390 -0.416 CAC TBV 29 TBV CBC CBC C 0 1 N N N 19.525 50.987 21.858 5.722 3.383 -0.382 CBC TBV 30 TBV ND ND N 0 1 Y N N 15.224 55.878 20.620 1.530 1.044 0.138 ND TBV 31 TBV C1D C1D C 0 1 Y N N 16.036 55.530 21.643 2.267 0.110 0.804 C1D TBV 32 TBV C2D C2D C 0 1 Y N N 15.902 56.336 22.864 1.671 -1.089 0.644 C2D TBV 33 TBV C3D C3D C 0 1 Y N N 14.867 57.297 22.514 0.525 -0.888 -0.150 C3D TBV 34 TBV C4D C4D C 0 1 Y N N 14.522 56.913 21.133 0.463 0.427 -0.445 C4D TBV 35 TBV CMD CMD C 0 1 N N N 16.642 56.205 24.160 2.144 -2.403 1.210 CMD TBV 36 TBV OC OC O 0 1 N N N 17.036 52.686 17.026 7.350 -1.900 -0.571 OC TBV 37 TBV CAD CAD C 0 1 N N N 14.270 58.386 23.354 -0.454 -1.947 -0.589 CAD TBV 38 TBV CBD CBD C 0 1 N N N 14.883 59.729 22.996 -1.568 -2.074 0.451 CBD TBV 39 TBV C46 C46 C 0 1 N N N 19.096 53.962 16.528 7.353 -2.804 1.670 C46 TBV 40 TBV CGD CGD C 0 1 N N N 14.373 60.820 23.916 -2.546 -3.133 0.012 CGD TBV 41 TBV O2D O2D O 0 1 N N N 13.806 60.525 24.992 -2.370 -3.725 -1.026 O2D TBV 42 TBV O1D O1D O 0 1 N N N 14.566 61.994 23.547 -3.613 -3.419 0.775 O1D TBV 43 TBV C47 C47 C 0 1 N N N 17.061 54.208 15.158 5.957 -3.825 -0.133 C47 TBV 44 TBV C44 C44 C 0 1 N N N 17.880 53.223 15.985 7.278 -3.117 0.174 C44 TBV 45 TBV OB OB O 0 1 N N N 15.200 51.561 18.239 -5.968 -2.380 -2.206 OB TBV 46 TBV C45 C45 C 0 1 N N N 18.407 52.085 15.119 8.446 -4.024 -0.217 C45 TBV 47 TBV HHA1 HHA1 H 0 0 N N N 13.983 58.643 20.221 -0.920 0.423 -2.070 HHA1 TBV 48 TBV HHA2 HHA2 H 0 0 N N N 12.631 57.456 20.937 -0.197 2.010 -1.714 HHA2 TBV 49 TBV HHB HHB H 0 1 N N N 12.268 55.271 15.318 -5.468 1.282 1.934 HHB TBV 50 TBV HHD1 HHD1 H 0 0 N N N 16.632 53.695 22.280 3.565 -0.289 2.450 HHD1 TBV 51 TBV HHD2 HHD2 H 0 0 N N N 17.938 54.993 21.652 3.541 1.410 1.918 HHD2 TBV 52 TBV HAA1 HAA1 H 0 0 N N N 10.396 59.430 18.293 -0.961 4.133 1.443 HAA1 TBV 53 TBV HAA2 HAA2 H 0 0 N N N 11.226 59.287 19.894 0.109 3.268 0.313 HAA2 TBV 54 TBV HMA1 HMA1 H 0 0 N N N 9.768 57.641 16.418 -4.274 4.265 1.393 HMA1 TBV 55 TBV HMA2 HMA2 H 0 0 N N N 11.064 58.521 15.540 -4.333 3.047 2.689 HMA2 TBV 56 TBV HMA3 HMA3 H 0 0 N N N 10.836 56.760 15.274 -2.873 4.040 2.468 HMA3 TBV 57 TBV HBA1 HBA1 H 0 0 N N N 13.235 60.412 18.925 -1.109 4.265 -1.603 HBA1 TBV 58 TBV HBA2 HBA2 H 0 0 N N N 12.416 60.590 17.377 -2.179 5.129 -0.473 HBA2 TBV 59 TBV H2A H2A H 0 1 N N N 10.064 62.791 18.938 0.449 7.566 -1.251 H2A TBV 60 TBV HB HB H 0 1 N N N 14.258 54.082 18.345 -4.379 -0.487 -1.291 HB TBV 61 TBV HMB1 HMB1 H 0 0 N N N 11.525 52.717 14.266 -8.389 0.330 1.715 HMB1 TBV 62 TBV HMB2 HMB2 H 0 0 N N N 12.910 53.615 13.558 -8.196 -1.344 2.288 HMB2 TBV 63 TBV HMB3 HMB3 H 0 0 N N N 12.901 51.819 13.541 -7.011 -0.101 2.758 HMB3 TBV 64 TBV HC HC H 0 1 N N N 16.005 54.466 18.895 5.238 -1.850 1.157 HC TBV 65 TBV HMC1 HMC1 H 0 0 N N N 19.371 51.058 17.412 6.960 0.677 -2.820 HMC1 TBV 66 TBV HMC2 HMC2 H 0 0 N N N 20.119 50.810 19.026 7.450 1.953 -1.679 HMC2 TBV 67 TBV HMC3 HMC3 H 0 0 N N N 18.622 49.921 18.583 8.334 0.408 -1.720 HMC3 TBV 68 TBV HAC HAC H 0 1 N N N 19.301 52.978 22.322 3.805 2.595 -0.630 HAC TBV 69 TBV HBC1 HBC1 H 0 0 N N N 20.063 50.984 22.795 6.760 3.178 -0.168 HBC1 TBV 70 TBV HBC2 HBC2 H 0 0 N N N 19.374 50.126 21.224 5.398 4.397 -0.569 HBC2 TBV 71 TBV HD HD H 0 1 N N N 15.159 55.471 19.709 1.730 1.992 0.090 HD TBV 72 TBV HMD1 HMD1 H 0 0 N N N 17.724 56.173 23.963 1.700 -2.556 2.194 HMD1 TBV 73 TBV HMD2 HMD2 H 0 0 N N N 16.412 57.068 24.802 1.845 -3.214 0.546 HMD2 TBV 74 TBV HMD3 HMD3 H 0 0 N N N 16.334 55.278 24.666 3.230 -2.390 1.300 HMD3 TBV 75 TBV HAD1 HAD1 H 0 0 N N N 13.185 58.426 23.176 -0.884 -1.667 -1.551 HAD1 TBV 76 TBV HAD2 HAD2 H 0 0 N N N 14.474 58.172 24.413 0.064 -2.901 -0.687 HAD2 TBV 77 TBV HBD1 HBD1 H 0 0 N N N 15.977 59.661 23.094 -1.138 -2.354 1.413 HBD1 TBV 78 TBV HBD2 HBD2 H 0 0 N N N 14.601 59.980 21.963 -2.085 -1.120 0.549 HBD2 TBV 79 TBV H1D H1D H 0 1 N N N 14.221 62.592 24.199 -4.213 -4.106 0.452 H1D TBV 80 TBV H471 H471 H 0 0 N N N 16.864 55.112 15.753 5.969 -4.187 -1.161 H471 TBV 81 TBV H472 H472 H 0 0 N N N 17.622 54.481 14.252 5.829 -4.667 0.547 H472 TBV 82 TBV H473 H473 H 0 0 N N N 16.106 53.742 14.873 5.131 -3.125 -0.005 H473 TBV 83 TBV H461 H461 H 0 0 N N N 19.812 54.140 15.712 6.479 -2.222 1.964 H461 TBV 84 TBV H462 H462 H 0 0 N N N 18.779 54.925 16.954 7.375 -3.736 2.235 H462 TBV 85 TBV H463 H463 H 0 0 N N N 19.575 53.354 17.310 8.257 -2.232 1.877 H463 TBV 86 TBV H451 H451 H 0 0 N N N 18.534 52.439 14.085 9.387 -3.520 0.002 H451 TBV 87 TBV H452 H452 H 0 0 N N N 19.377 51.744 15.512 8.391 -4.953 0.352 H452 TBV 88 TBV H453 H453 H 0 0 N N N 17.691 51.250 15.135 8.392 -4.247 -1.282 H453 TBV 89 TBV HAB HAB H 0 1 N N N 14.668 50.148 14.532 -9.049 -2.564 0.548 HAB TBV 90 TBV HBB1 HBB1 H 0 0 N N N 14.574 48.362 15.844 -9.327 -4.149 -1.245 HBB1 TBV 91 TBV HBB2 HBB2 H 0 0 N N N 14.055 49.305 17.437 -7.732 -3.553 -2.019 HBB2 TBV 92 TBV HA1 HA1 H 0 1 N N N 14.066 55.429 18.737 -3.056 -0.180 -0.670 HA1 TBV 93 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TBV CHA C1A SING N N 1 TBV CHA C4D SING N N 2 TBV CHB C4A SING N N 3 TBV CHB C1B DOUB N N 4 TBV CHD C4C SING N N 5 TBV CHD C1D SING N Z 6 TBV NA C1A SING Y N 7 TBV NA C4A SING Y N 8 TBV NA HA1 SING N N 9 TBV C1A C2A DOUB Y N 10 TBV C2A C3A SING Y N 11 TBV C2A CAA SING N N 12 TBV C3A C4A DOUB Y N 13 TBV C3A CMA SING N N 14 TBV CAA CBA SING N N 15 TBV CBA CGA SING N N 16 TBV CGA O1A DOUB N N 17 TBV CGA O2A SING N N 18 TBV NB C1B SING N N 19 TBV NB C4B SING N N 20 TBV C1B C2B SING N N 21 TBV C2B CMB SING N N 22 TBV C2B C3B DOUB N N 23 TBV NC C1C SING Y N 24 TBV NC C4C SING Y N 25 TBV C1C C2C DOUB Y N 26 TBV C1C OC SING N N 27 TBV C2C C3C SING Y N 28 TBV C2C CMC SING N N 29 TBV C3C C4C DOUB Y N 30 TBV C3C CAC SING N N 31 TBV CAC CBC DOUB N N 32 TBV ND C1D SING Y N 33 TBV ND C4D SING Y N 34 TBV C1D C2D DOUB Y N 35 TBV C2D C3D SING Y N 36 TBV C2D CMD SING N N 37 TBV C3D C4D DOUB Y N 38 TBV C3D CAD SING N N 39 TBV CAD CBD SING N N 40 TBV CBD CGD SING N N 41 TBV CGD O1D SING N N 42 TBV CGD O2D DOUB N N 43 TBV OC C44 SING N N 44 TBV C44 C47 SING N N 45 TBV C44 C46 SING N N 46 TBV C44 C45 SING N N 47 TBV C3B CAB SING N N 48 TBV C3B C4B SING N N 49 TBV CAB CBB DOUB N N 50 TBV C4B OB DOUB N N 51 TBV CHA HHA1 SING N N 52 TBV CHA HHA2 SING N N 53 TBV CHB HHB SING N N 54 TBV CHD HHD1 SING N N 55 TBV CHD HHD2 SING N N 56 TBV CAA HAA1 SING N N 57 TBV CAA HAA2 SING N N 58 TBV CMA HMA1 SING N N 59 TBV CMA HMA2 SING N N 60 TBV CMA HMA3 SING N N 61 TBV CBA HBA1 SING N N 62 TBV CBA HBA2 SING N N 63 TBV O2A H2A SING N N 64 TBV NB HB SING N N 65 TBV CMB HMB1 SING N N 66 TBV CMB HMB2 SING N N 67 TBV CMB HMB3 SING N N 68 TBV NC HC SING N N 69 TBV CMC HMC1 SING N N 70 TBV CMC HMC2 SING N N 71 TBV CMC HMC3 SING N N 72 TBV CAC HAC SING N N 73 TBV CBC HBC1 SING N N 74 TBV CBC HBC2 SING N N 75 TBV ND HD SING N N 76 TBV CMD HMD1 SING N N 77 TBV CMD HMD2 SING N N 78 TBV CMD HMD3 SING N N 79 TBV CAD HAD1 SING N N 80 TBV CAD HAD2 SING N N 81 TBV CBD HBD1 SING N N 82 TBV CBD HBD2 SING N N 83 TBV O1D H1D SING N N 84 TBV C47 H471 SING N N 85 TBV C47 H472 SING N N 86 TBV C47 H473 SING N N 87 TBV C46 H461 SING N N 88 TBV C46 H462 SING N N 89 TBV C46 H463 SING N N 90 TBV C45 H451 SING N N 91 TBV C45 H452 SING N N 92 TBV C45 H453 SING N N 93 TBV CAB HAB SING N N 94 TBV CBB HBB1 SING N N 95 TBV CBB HBB2 SING N N 96 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TBV SMILES_CANONICAL CACTVS 3.352 "Cc1c(Cc2[nH]c(OC(C)(C)C)c(C)c2C=C)[nH]c(Cc3[nH]c(\C=C4/NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)c1CCC(O)=O" TBV SMILES CACTVS 3.352 "Cc1c(Cc2[nH]c(OC(C)(C)C)c(C)c2C=C)[nH]c(Cc3[nH]c(C=C4NC(=O)C(=C4C)C=C)c(C)c3CCC(O)=O)c1CCC(O)=O" TBV SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "Cc1c(c([nH]c1Cc2c(c(c([nH]2)OC(C)(C)C)C)C=C)Cc3c(c(c([nH]3)\C=C/4\C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O" TBV SMILES "OpenEye OEToolkits" 1.6.1 "Cc1c(c([nH]c1Cc2c(c(c([nH]2)OC(C)(C)C)C)C=C)Cc3c(c(c([nH]3)C=C4C(=C(C(=O)N4)C=C)C)C)CCC(=O)O)CCC(=O)O" TBV InChI InChI 1.03 "InChI=1S/C37H46N4O6/c1-10-23-22(6)36(47-37(7,8)9)41-30(23)17-28-21(5)26(13-15-34(44)45)32(39-28)18-31-25(12-14-33(42)43)20(4)27(38-31)16-29-19(3)24(11-2)35(46)40-29/h10-11,16,38-39,41H,1-2,12-15,17-18H2,3-9H3,(H,40,46)(H,42,43)(H,44,45)/b29-16-" TBV InChIKey InChI 1.03 JDQNAGCTUKHXGS-MWLSYYOVSA-N # _pdbx_chem_comp_identifier.comp_id TBV _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 1.6.1 _pdbx_chem_comp_identifier.identifier "3-[2-[[3-(2-carboxyethyl)-5-[[3-ethenyl-4-methyl-5-[(2-methylpropan-2-yl)oxy]-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-2-yl]methyl]-5-[(Z)-(4-ethenyl-3-methyl-5-oxo-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TBV "Create component" 2009-03-19 EBI TBV "Modify aromatic_flag" 2011-06-04 RCSB TBV "Modify descriptor" 2011-06-04 RCSB TBV "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TBV _pdbx_chem_comp_synonyms.name BILIVERDIN _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##