data_TC1 # _chem_comp.id TC1 _chem_comp.name "3-(5-PHOSPHO-2-DEOXY-BETA-D-RIBOFURANOSYL)-2-OXO-1,3-DIAZA-PHENOTHIAZINE" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C15 H16 N3 O7 P S" _chem_comp.mon_nstd_parent_comp_id DC _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-07-18 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 413.342 _chem_comp.one_letter_code C _chem_comp.three_letter_code TC1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1TUQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TC1 P P P 0 1 N N N 3.480 -3.578 5.889 -3.968 -1.665 3.118 P TC1 1 TC1 OP1 OP1 O 0 1 N N N 4.681 -3.688 6.746 -4.406 -2.599 4.209 OP1 TC1 2 TC1 OP2 OP2 O 0 1 N N N 2.480 -2.545 6.241 -3.912 -2.311 1.636 OP2 TC1 3 TC1 "O5'" O5* O 0 1 N N N 3.964 -3.305 4.389 -2.493 -1.028 3.315 "O5'" TC1 4 TC1 "C5'" C5* C 0 1 N N N 4.996 -4.105 3.819 -2.005 -0.136 2.327 "C5'" TC1 5 TC1 "C4'" C4* C 0 1 N N R 5.463 -3.525 2.476 -0.611 0.328 2.728 "C4'" TC1 6 TC1 "C3'" C3* C 0 1 N N S 5.861 -2.083 2.516 0.008 1.286 1.720 "C3'" TC1 7 TC1 "C2'" C2* C 0 1 N N N 4.713 -1.357 1.872 0.710 0.360 0.754 "C2'" TC1 8 TC1 "C1'" C1* C 0 1 N N R 4.343 -2.337 0.762 1.157 -0.778 1.657 "C1'" TC1 9 TC1 "O4'" O4* O 0 1 N N N 4.523 -3.588 1.387 0.247 -0.829 2.764 "O4'" TC1 10 TC1 N1 N1 N 0 1 N N N 2.964 -2.174 0.287 1.164 -2.047 0.989 N1 TC1 11 TC1 C2 C2 C 0 1 N N N 2.750 -2.239 -1.133 2.344 -2.508 0.391 C2 TC1 12 TC1 O2 O2 O 0 1 N N N 3.759 -2.413 -1.840 3.387 -1.853 0.420 O2 TC1 13 TC1 N3 N3 N 0 1 N N N 1.449 -2.124 -1.642 2.311 -3.735 -0.244 N3 TC1 14 TC1 C4 C4 C 0 1 N N N 0.434 -1.904 -0.800 1.218 -4.459 -0.295 C4 TC1 15 TC1 C6 C6 C 0 1 Y N N -2.018 -1.500 -0.651 0.253 -6.587 -1.126 C6 TC1 16 TC1 C14 C14 C 0 1 N N N 1.910 -1.969 1.127 0.011 -2.796 0.945 C14 TC1 17 TC1 C13 C13 C 0 1 N N N 0.627 -1.798 0.649 -0.046 -3.984 0.337 C13 TC1 18 TC1 N5 N5 N 0 1 N N N -0.842 -1.746 -1.334 1.296 -5.667 -0.955 N5 TC1 19 TC1 C11 C11 C 0 1 Y N N -2.048 -1.295 0.736 -1.033 -6.364 -0.620 C11 TC1 20 TC1 S12 S12 S 0 1 N N N -0.608 -1.436 1.738 -1.490 -4.906 0.290 S12 TC1 21 TC1 C7 C7 C 0 1 Y N N -3.211 -1.437 -1.389 0.509 -7.776 -1.834 C7 TC1 22 TC1 C8 C8 C 0 1 Y N N -4.409 -1.159 -0.750 -0.490 -8.726 -2.036 C8 TC1 23 TC1 C9 C9 C 0 1 Y N N -4.438 -0.953 0.627 -1.765 -8.501 -1.532 C9 TC1 24 TC1 C10 C10 C 0 1 Y N N -3.265 -1.028 1.364 -2.035 -7.327 -0.829 C10 TC1 25 TC1 "O3'" O3* O 0 1 N N N 7.083 -1.896 1.804 0.965 2.121 2.368 "O3'" TC1 26 TC1 OP3 O3P O 0 1 N Y N ? ? ? -4.901 -0.360 2.920 OP3 TC1 27 TC1 HP2 HP2 H 0 1 N N N 1.709 -2.474 5.691 -4.684 -2.823 1.313 HP2 TC1 28 TC1 "H5'" 1H5* H 0 1 N N N 4.659 -5.129 3.657 -1.971 -0.654 1.366 "H5'" TC1 29 TC1 "H5''" 2H5* H 0 0 N N N 5.870 -4.142 4.475 -2.683 0.718 2.254 "H5''" TC1 30 TC1 "H4'" H4* H 0 1 N N N 6.352 -4.119 2.172 -0.644 0.753 3.736 "H4'" TC1 31 TC1 "H3'" H3* H 0 1 N N N 6.051 -1.745 3.537 -0.722 1.941 1.236 "H3'" TC1 32 TC1 "H2'" 1H2* H 0 1 N N N 3.921 -1.232 2.606 -0.003 -0.001 0.003 "H2'" TC1 33 TC1 "H2''" 2H2* H 0 0 N N N 5.062 -0.386 1.527 1.556 0.818 0.232 "H2''" TC1 34 TC1 "H1'" H1* H 0 1 N N N 5.039 -2.223 -0.069 2.163 -0.604 2.054 "H1'" TC1 35 TC1 H14 4H1 H 0 1 N N N 2.128 -1.930 2.212 -0.853 -2.358 1.436 H14 TC1 36 TC1 H5 5H H 0 1 N N N -0.945 -1.850 -2.323 2.188 -5.930 -1.363 H5 TC1 37 TC1 H7 7H H 0 1 N N N -3.196 -1.602 -2.447 1.502 -7.969 -2.236 H7 TC1 38 TC1 H8 8H H 0 1 N N N -5.315 -1.105 -1.316 -0.273 -9.637 -2.584 H8 TC1 39 TC1 H9 9H H 0 1 N N N -5.364 -0.738 1.116 -2.549 -9.236 -1.684 H9 TC1 40 TC1 H10 0H1 H 0 1 N N N -3.294 -0.877 2.423 -3.042 -7.176 -0.445 H10 TC1 41 TC1 "HO3'" H3T H 0 0 N Y N 7.336 -0.981 1.829 0.644 3.037 2.298 "HO3'" TC1 42 TC1 HOP3 3HOP H 0 0 N N N -0.771 0.071 -0.550 -5.874 -0.475 2.871 HOP3 TC1 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TC1 P OP1 DOUB N N 1 TC1 P OP2 SING N N 2 TC1 P "O5'" SING N N 3 TC1 P OP3 SING N N 4 TC1 OP2 HP2 SING N N 5 TC1 "O5'" "C5'" SING N N 6 TC1 "C5'" "C4'" SING N N 7 TC1 "C5'" "H5'" SING N N 8 TC1 "C5'" "H5''" SING N N 9 TC1 "C4'" "C3'" SING N N 10 TC1 "C4'" "O4'" SING N N 11 TC1 "C4'" "H4'" SING N N 12 TC1 "C3'" "C2'" SING N N 13 TC1 "C3'" "O3'" SING N N 14 TC1 "C3'" "H3'" SING N N 15 TC1 "C2'" "C1'" SING N N 16 TC1 "C2'" "H2'" SING N N 17 TC1 "C2'" "H2''" SING N N 18 TC1 "C1'" "O4'" SING N N 19 TC1 "C1'" N1 SING N N 20 TC1 "C1'" "H1'" SING N N 21 TC1 N1 C2 SING N N 22 TC1 N1 C14 SING N N 23 TC1 C2 O2 DOUB N N 24 TC1 C2 N3 SING N N 25 TC1 N3 C4 DOUB N N 26 TC1 C4 C13 SING N N 27 TC1 C4 N5 SING N N 28 TC1 C6 N5 SING N N 29 TC1 C6 C11 DOUB Y N 30 TC1 C6 C7 SING Y N 31 TC1 C14 C13 DOUB N N 32 TC1 C14 H14 SING N N 33 TC1 C13 S12 SING N N 34 TC1 N5 H5 SING N N 35 TC1 C11 S12 SING N N 36 TC1 C11 C10 SING Y N 37 TC1 C7 C8 DOUB Y N 38 TC1 C7 H7 SING N N 39 TC1 C8 C9 SING Y N 40 TC1 C8 H8 SING N N 41 TC1 C9 C10 DOUB Y N 42 TC1 C9 H9 SING N N 43 TC1 C10 H10 SING N N 44 TC1 "O3'" "HO3'" SING N N 45 TC1 OP3 HOP3 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TC1 SMILES ACDLabs 10.04 "O=P(O)(O)OCC4OC(N2C(=O)N=C1Nc3c(SC1=C2)cccc3)CC4O" TC1 SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=C3Sc4ccccc4NC3=NC2=O" TC1 SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)N2C=C3Sc4ccccc4NC3=NC2=O" TC1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)NC3=NC(=O)N(C=C3S2)[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O" TC1 SMILES "OpenEye OEToolkits" 1.5.0 "c1ccc2c(c1)NC3=NC(=O)N(C=C3S2)C4CC(C(O4)COP(=O)(O)O)O" TC1 InChI InChI 1.03 "InChI=1S/C15H16N3O7PS/c19-9-5-13(25-10(9)7-24-26(21,22)23)18-6-12-14(17-15(18)20)16-8-3-1-2-4-11(8)27-12/h1-4,6,9-10,13,19H,5,7H2,(H,16,17,20)(H2,21,22,23)/t9-,10+,13+/m0/s1" TC1 InChIKey InChI 1.03 JXJOUUOATWCAOY-OPQQBVKSSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TC1 "SYSTEMATIC NAME" ACDLabs 10.04 "3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-3H-pyrimido[5,4-b][1,4]benzothiazin-2(10H)-one" TC1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-(2-oxo-10H-pyrimido[5,4-b][1,4]benzothiazin-3-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TC1 "Create component" 2004-07-18 RCSB TC1 "Modify descriptor" 2011-06-04 RCSB #