data_TDG # _chem_comp.id TDG _chem_comp.name THIODIGALACTOSIDE _chem_comp.type saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C12 H22 O10 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status OBS _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 358.362 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TDG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4OAA _chem_comp.pdbx_subcomponent_list "GAL YIO" _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_residue_numbering _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_polymer_type _chem_comp_atom.pdbx_component_id _chem_comp_atom.pdbx_ordinal TDG C1 C1 C 0 1 N N S 28.341 -18.400 51.875 -1.366 0.415 0.383 GAL 1 C1 polymer 1 1 TDG C2 C2 C 0 1 N N R 28.323 -18.403 53.391 -2.579 1.223 0.853 GAL 1 C2 polymer 1 2 TDG C3 C3 C 0 1 N N S 26.917 -18.485 53.941 -3.747 0.269 1.120 GAL 1 C3 polymer 1 3 TDG C4 C4 C 0 1 N N R 26.062 -17.424 53.265 -4.039 -0.531 -0.153 GAL 1 C4 polymer 1 4 TDG C5 C5 C 0 1 N N R 26.193 -17.455 51.734 -2.771 -1.271 -0.585 GAL 1 C5 polymer 1 5 TDG C6 C6 C 0 1 N N N 25.354 -16.412 50.988 -3.038 -2.025 -1.889 GAL 1 C6 polymer 1 6 TDG O2 O1 O 0 1 N N N 29.098 -19.510 53.871 -2.249 1.923 2.055 GAL 1 O2 polymer 1 7 TDG O3 O2 O 0 1 N N N 27.045 -18.246 55.350 -4.904 1.021 1.489 GAL 1 O3 polymer 1 8 TDG O4 O3 O 0 1 N N N 26.502 -16.179 53.809 -4.449 0.360 -1.193 GAL 1 O4 polymer 1 9 TDG O5 O4 O 0 1 N N N 27.560 -17.335 51.344 -1.716 -0.329 -0.786 GAL 1 O5 polymer 1 10 TDG O6 O5 O 0 1 N N N 25.833 -16.260 49.646 -1.893 -2.808 -2.230 GAL 1 O6 polymer 1 11 TDG "C1'" C7 C 0 1 N N S 30.333 -19.189 50.019 1.367 0.414 -0.386 YIO 2 C1 polymer 1 12 TDG "C2'" C8 C 0 1 N N R 31.641 -18.715 49.407 2.579 1.220 -0.857 YIO 2 C2 polymer 1 13 TDG "C3'" C9 C 0 1 N N S 32.041 -19.659 48.288 3.747 0.265 -1.120 YIO 2 C3 polymer 1 14 TDG "C4'" C10 C 0 1 N N R 32.120 -21.085 48.818 4.039 -0.531 0.156 YIO 2 C4 polymer 1 15 TDG "C5'" C11 C 0 1 N N R 30.818 -21.508 49.494 2.770 -1.270 0.588 YIO 2 C5 polymer 1 16 TDG "C6'" C12 C 0 1 N N N 30.957 -22.855 50.204 3.036 -2.019 1.895 YIO 2 C6 polymer 1 17 TDG "O2'" O6 O 0 1 N N N 31.506 -17.376 48.910 2.251 1.917 -2.060 YIO 2 O2 polymer 1 18 TDG "O3'" O7 O 0 1 N N N 33.311 -19.270 47.753 4.905 1.016 -1.490 YIO 2 O3 polymer 1 19 TDG "O4'" O8 O 0 1 N N N 33.194 -21.180 49.762 4.448 0.363 1.193 YIO 2 O4 polymer 1 20 TDG "O5'" O9 O 0 1 N N N 30.409 -20.543 50.464 1.715 -0.327 0.786 YIO 2 O5 polymer 1 21 TDG "O6'" O10 O 0 1 N N N 30.987 -23.919 49.247 1.891 -2.802 2.238 YIO 2 O6 polymer 1 22 TDG S1 S1 S 0 1 N N N 30.027 -18.189 51.430 0.000 1.543 -0.003 YIO 2 S1 polymer 1 23 TDG H1 H1 H 0 1 N N N 28.016 -19.377 51.486 -1.059 -0.271 1.172 GAL 1 H1 polymer 1 24 TDG H2 H2 H 0 1 N N N 28.776 -17.464 53.742 -2.861 1.939 0.081 GAL 1 H2 polymer 1 25 TDG H3 H4 H 0 1 N N N 26.496 -19.482 53.746 -3.483 -0.414 1.928 GAL 1 H3 polymer 1 26 TDG H4 H6 H 0 1 N N N 25.009 -17.598 53.529 -4.834 -1.251 0.043 GAL 1 H4 polymer 1 27 TDG H5 H8 H 0 1 N N N 25.833 -18.442 51.407 -2.482 -1.980 0.192 GAL 1 H5 polymer 1 28 TDG H61 H10 H 0 1 N N N 24.304 -16.740 50.964 -3.240 -1.310 -2.687 GAL 1 H61 polymer 1 29 TDG H62 H9 H 0 1 N N N 25.425 -15.447 51.511 -3.901 -2.679 -1.760 GAL 1 H62 polymer 1 30 TDG HO2 H3 H 0 1 N N N 29.089 -19.515 54.821 -1.513 2.542 1.961 GAL 1 HO2 polymer 1 31 TDG HO3 H5 H 0 1 N N N 27.583 -18.925 55.739 -4.787 1.558 2.285 GAL 1 HO3 polymer 1 32 TDG HO4 H7 H 0 1 N N N 26.407 -16.195 54.754 -5.246 0.867 -0.985 GAL 1 HO4 polymer 1 33 TDG HO6 H11 H 0 1 N N N 25.307 -15.612 49.193 -1.992 -3.314 -3.048 GAL 1 HO6 polymer 1 34 TDG "H1'" H12 H 0 1 N N N 29.501 -19.035 49.316 1.060 -0.275 -1.173 YIO 2 H1 polymer 1 35 TDG "H2'" H13 H 0 1 N N N 32.420 -18.744 50.183 2.862 1.937 -0.086 YIO 2 H2 polymer 1 36 TDG "H3'" H15 H 0 1 N N N 31.274 -19.618 47.500 3.483 -0.421 -1.925 YIO 2 H3 polymer 1 37 TDG "HO2'" H14 H 0 0 N N N 31.256 -16.798 49.621 1.515 2.537 -1.967 YIO 2 HA polymer 1 38 TDG "H4'" H17 H 0 1 N N N 32.309 -21.762 47.972 4.833 -1.253 -0.039 YIO 2 H4 polymer 1 39 TDG "HO3'" H16 H 0 0 N N N 33.257 -18.381 47.424 4.792 1.545 -2.292 YIO 2 HB polymer 1 40 TDG "H5'" H19 H 0 1 N N N 30.043 -21.605 48.720 2.482 -1.981 -0.186 YIO 2 H5 polymer 1 41 TDG "HO4'" H18 H 0 0 N N N 33.246 -22.068 50.095 5.246 0.869 0.984 YIO 2 HC polymer 1 42 TDG "H6'1" H21 H 0 0 N N N 31.890 -22.864 50.786 3.238 -1.302 2.691 YIO 2 H61C polymer 1 43 TDG "H6'2" H20 H 0 0 N N N 30.101 -22.999 50.880 3.899 -2.674 1.770 YIO 2 H62C polymer 1 44 TDG "HO6'" H22 H 0 0 N N N 31.073 -24.750 49.699 1.989 -3.305 3.058 YIO 2 HO6 polymer 1 45 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TDG "O3'" "C3'" SING N N 1 TDG "C3'" "C4'" SING N N 2 TDG "C3'" "C2'" SING N N 3 TDG "C4'" "C5'" SING N N 4 TDG "C4'" "O4'" SING N N 5 TDG "O2'" "C2'" SING N N 6 TDG "O6'" "C6'" SING N N 7 TDG "C2'" "C1'" SING N N 8 TDG "C5'" "C6'" SING N N 9 TDG "C5'" "O5'" SING N N 10 TDG O6 C6 SING N N 11 TDG "C1'" "O5'" SING N N 12 TDG "C1'" S1 SING N N 13 TDG C6 C5 SING N N 14 TDG O5 C5 SING N N 15 TDG O5 C1 SING N N 16 TDG S1 C1 SING N N 17 TDG C5 C4 SING N N 18 TDG C1 C2 SING N N 19 TDG C4 O4 SING N N 20 TDG C4 C3 SING N N 21 TDG C2 O2 SING N N 22 TDG C2 C3 SING N N 23 TDG C3 O3 SING N N 24 TDG C1 H1 SING N N 25 TDG C2 H2 SING N N 26 TDG O2 HO2 SING N N 27 TDG C3 H3 SING N N 28 TDG O3 HO3 SING N N 29 TDG C4 H4 SING N N 30 TDG O4 HO4 SING N N 31 TDG C5 H5 SING N N 32 TDG C6 H62 SING N N 33 TDG C6 H61 SING N N 34 TDG O6 HO6 SING N N 35 TDG "C1'" "H1'" SING N N 36 TDG "C2'" "H2'" SING N N 37 TDG "O2'" "HO2'" SING N N 38 TDG "C3'" "H3'" SING N N 39 TDG "O3'" "HO3'" SING N N 40 TDG "C4'" "H4'" SING N N 41 TDG "O4'" "HO4'" SING N N 42 TDG "C5'" "H5'" SING N N 43 TDG "C6'" "H6'2" SING N N 44 TDG "C6'" "H6'1" SING N N 45 TDG "O6'" "HO6'" SING N N 46 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TDG SMILES ACDLabs 10.04 "O2C(SC1OC(C(O)C(O)C1O)CO)C(O)C(O)C(O)C2CO" TDG SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@@H](S[C@@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@@H](O)[C@H]1O" TDG SMILES CACTVS 3.341 "OC[CH]1O[CH](S[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH](O)[CH]1O" TDG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@@H]([C@@H]([C@H]([C@@H](O1)S[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)O)O)O)O)O)O" TDG SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)SC2C(C(C(C(O2)CO)O)O)O)O)O)O)O" TDG InChI InChI 1.03 "InChI=1S/C12H22O10S/c13-1-3-5(15)7(17)9(19)11(21-3)23-12-10(20)8(18)6(16)4(2-14)22-12/h3-20H,1-2H2/t3-,4-,5+,6+,7+,8+,9-,10-,11+,12+/m1/s1" TDG InChIKey InChI 1.03 SYKYBMOFPMXDRQ-ZFDCCPEWSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TDG "SYSTEMATIC NAME" ACDLabs 10.04 "beta-D-galactopyranosyl 1-thio-beta-D-galactopyranoside" TDG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-6-[(2S,3R,4S,5R,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]sulfanyl-oxane-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TDG "Create component" 1999-07-08 PDBJ TDG "Modify descriptor" 2011-06-04 RCSB TDG "Other modification" 2020-07-03 RCSB TDG "Obsolete component" 2020-07-17 RCSB ##