data_TDI # _chem_comp.id TDI _chem_comp.name "(3R,4S)-1-[(4-AMINO-5H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)METHYL]-4-[(METHYLSULFANYL)METHYL]PYRROLIDIN-3-OL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N5 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(3R,4S)-1-[9-DEAZAADENIN-9-YL)METHYL]-3-HYDROXY-4-(METHYLTHIOMETHYL)PYRROLIDINE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-12-13 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 293.388 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TDI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1Y6Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TDI C2 C2 C 0 1 Y N N 53.790 75.119 21.033 3.569 1.913 0.421 C2 TDI 1 TDI C4 C4 C 0 1 Y N N 55.679 74.355 19.843 2.493 -0.120 0.387 C4 TDI 2 TDI C5 C5 C 0 1 Y N N 54.877 74.090 18.701 3.637 -0.705 -0.184 C5 TDI 3 TDI C6 C6 C 0 1 Y N N 53.497 74.366 18.796 4.742 0.116 -0.436 C6 TDI 4 TDI CS5 CS5 C 0 1 N N N 56.570 68.203 23.222 -6.572 -0.838 -1.052 CS5 TDI 5 TDI S S S 0 1 N N N 55.708 69.777 23.563 -5.328 -0.628 0.251 S TDI 6 TDI "C5'" C5* C 0 1 N N N 56.913 70.567 22.496 -4.078 0.322 -0.657 "C5'" TDI 7 TDI "C4'" C4* C 0 1 N N S 58.251 71.265 22.340 -2.897 0.626 0.267 "C4'" TDI 8 TDI "C1'" C1* C 0 1 N N N 58.578 72.050 21.066 -2.145 -0.672 0.617 "C1'" TDI 9 TDI "N1'" N1* N 0 1 N N N 58.843 73.448 21.530 -0.771 -0.534 0.086 "N1'" TDI 10 TDI C10 C10 C 0 1 N N N 58.245 74.061 20.335 0.133 -1.081 1.107 C10 TDI 11 TDI C9 C9 C 0 1 Y N N 57.026 73.974 19.456 1.522 -1.199 0.536 C9 TDI 12 TDI C8 C8 C 0 1 Y N N 56.982 73.527 18.181 2.101 -2.318 0.061 C8 TDI 13 TDI N7 N7 N 0 1 Y N N 55.700 73.593 17.722 3.364 -2.040 -0.372 N7 TDI 14 TDI N6 N6 N 0 1 N N N 52.669 74.119 17.707 5.894 -0.403 -1.003 N6 TDI 15 TDI N1 N1 N 0 1 Y N N 52.999 74.877 19.974 4.662 1.405 -0.120 N1 TDI 16 TDI N3 N3 N 0 1 Y N N 55.108 74.866 20.980 2.506 1.184 0.678 N3 TDI 17 TDI "C2'" C2* C 0 1 N N N 57.858 73.667 22.639 -0.507 0.926 0.021 "C2'" TDI 18 TDI "C3'" C3* C 0 1 N N R 57.862 72.329 23.412 -1.860 1.512 -0.460 "C3'" TDI 19 TDI "O3'" O3* O 0 1 N N N 59.161 72.345 24.048 -1.988 2.880 -0.065 "O3'" TDI 20 TDI H2 H2 H 0 1 N N N 53.352 75.531 21.958 3.549 2.966 0.662 H2 TDI 21 TDI HS51 1HS5 H 0 0 N N N 57.664 68.092 23.405 -6.131 -1.375 -1.892 HS51 TDI 22 TDI HS52 2HS5 H 0 0 N N N 55.821 67.712 23.886 -7.416 -1.405 -0.661 HS52 TDI 23 TDI HS53 3HS5 H 0 0 N N N 56.737 67.850 22.178 -6.916 0.141 -1.387 HS53 TDI 24 TDI "H5'1" 1H5* H 0 0 N N N 56.256 71.337 22.028 -3.730 -0.258 -1.512 "H5'1" TDI 25 TDI "H5'2" 2H5* H 0 0 N N N 57.053 69.749 21.751 -4.515 1.258 -1.007 "H5'2" TDI 26 TDI "H4'" H4* H 0 1 N N N 59.121 70.569 22.379 -3.245 1.118 1.175 "H4'" TDI 27 TDI "H1'1" 1H1* H 0 0 N N N 57.794 71.977 20.277 -2.113 -0.803 1.699 "H1'1" TDI 28 TDI "H1'2" 2H1* H 0 0 N N N 59.407 71.609 20.464 -2.639 -1.524 0.151 "H1'2" TDI 29 TDI H101 1H10 H 0 0 N N N 59.065 73.940 19.590 0.150 -0.417 1.971 H101 TDI 30 TDI H102 2H10 H 0 0 N N N 58.237 75.139 20.619 -0.219 -2.067 1.412 H102 TDI 31 TDI H8 H8 H 0 1 N N N 57.852 73.166 17.607 1.634 -3.292 0.029 H8 TDI 32 TDI HN7 HN7 H 0 1 N N N 55.402 73.313 16.788 3.977 -2.686 -0.756 HN7 TDI 33 TDI HN61 1HN6 H 0 0 N N N 52.787 73.146 17.424 5.941 -1.345 -1.230 HN61 TDI 34 TDI HN62 2HN6 H 0 0 N N N 51.671 74.319 17.776 6.654 0.175 -1.173 HN62 TDI 35 TDI "H2'1" 1H2* H 0 0 N N N 56.849 73.996 22.298 -0.250 1.315 1.006 "H2'1" TDI 36 TDI "H2'2" 2H2* H 0 0 N N N 58.069 74.562 23.270 0.284 1.143 -0.697 "H2'2" TDI 37 TDI "H3'" H3* H 0 1 N N N 56.938 72.172 24.016 -1.960 1.414 -1.541 "H3'" TDI 38 TDI H1 H1 H 0 1 N N N 58.924 72.993 24.701 -1.267 3.362 -0.491 H1 TDI 39 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TDI C2 N1 DOUB Y N 1 TDI C2 N3 SING Y N 2 TDI C2 H2 SING N N 3 TDI C4 C5 SING Y N 4 TDI C4 C9 SING Y N 5 TDI C4 N3 DOUB Y N 6 TDI C5 C6 DOUB Y N 7 TDI C5 N7 SING Y N 8 TDI C6 N6 SING N N 9 TDI C6 N1 SING Y N 10 TDI CS5 S SING N N 11 TDI CS5 HS51 SING N N 12 TDI CS5 HS52 SING N N 13 TDI CS5 HS53 SING N N 14 TDI S "C5'" SING N N 15 TDI "C5'" "C4'" SING N N 16 TDI "C5'" "H5'1" SING N N 17 TDI "C5'" "H5'2" SING N N 18 TDI "C4'" "C1'" SING N N 19 TDI "C4'" "C3'" SING N N 20 TDI "C4'" "H4'" SING N N 21 TDI "C1'" "N1'" SING N N 22 TDI "C1'" "H1'1" SING N N 23 TDI "C1'" "H1'2" SING N N 24 TDI "N1'" C10 SING N N 25 TDI "N1'" "C2'" SING N N 26 TDI C10 C9 SING N N 27 TDI C10 H101 SING N N 28 TDI C10 H102 SING N N 29 TDI C9 C8 DOUB Y N 30 TDI C8 N7 SING Y N 31 TDI C8 H8 SING N N 32 TDI N7 HN7 SING N N 33 TDI N6 HN61 SING N N 34 TDI N6 HN62 SING N N 35 TDI "C2'" "C3'" SING N N 36 TDI "C2'" "H2'1" SING N N 37 TDI "C2'" "H2'2" SING N N 38 TDI "C3'" "O3'" SING N N 39 TDI "C3'" "H3'" SING N N 40 TDI "O3'" H1 SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TDI SMILES ACDLabs 10.04 "S(C)CC3CN(Cc2cnc1c2ncnc1N)CC3O" TDI SMILES_CANONICAL CACTVS 3.341 "CSC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c(N)ncnc23" TDI SMILES CACTVS 3.341 "CSC[CH]1CN(C[CH]1O)Cc2c[nH]c3c(N)ncnc23" TDI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CSC[C@H]1C[N@](C[C@@H]1O)Cc2c[nH]c3c2ncnc3N" TDI SMILES "OpenEye OEToolkits" 1.5.0 "CSCC1CN(CC1O)Cc2c[nH]c3c2ncnc3N" TDI InChI InChI 1.03 "InChI=1S/C13H19N5OS/c1-20-6-9-4-18(5-10(9)19)3-8-2-15-12-11(8)16-7-17-13(12)14/h2,7,9-10,15,19H,3-6H2,1H3,(H2,14,16,17)/t9-,10+/m1/s1" TDI InChIKey InChI 1.03 NTHMDFGHOCNNOE-ZJUUUORDSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TDI "SYSTEMATIC NAME" ACDLabs 10.04 "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[(methylsulfanyl)methyl]pyrrolidin-3-ol" TDI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(1S,3R,4S)-1-[(4-amino-5H-pyrrolo[4,5-d]pyrimidin-7-yl)methyl]-4-(methylsulfanylmethyl)pyrrolidin-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TDI "Create component" 2004-12-13 PDBJ TDI "Modify descriptor" 2011-06-04 RCSB TDI "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TDI _pdbx_chem_comp_synonyms.name "(3R,4S)-1-[9-DEAZAADENIN-9-YL)METHYL]-3-HYDROXY-4-(METHYLTHIOMETHYL)PYRROLIDINE" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##