data_TDS # _chem_comp.id TDS _chem_comp.name "8-HYDROXY-5,7-DIMETHOXY-3-METHYL-2-TRIDECYL-4H-CHROMEN-4-ONE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H38 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms TRIDECYL-STIGMATELLIN _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-10-02 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 418.566 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TDS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1VF5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TDS CBC CBC C 0 1 N N N 94.033 -9.699 77.906 -0.648 0.604 13.828 CBC TDS 1 TDS CBB CBB C 0 1 N N N 93.882 -8.418 78.423 -0.708 1.264 12.450 CBB TDS 2 TDS CBA CBA C 0 1 N N N 93.832 -8.465 79.951 -0.398 0.224 11.371 CBA TDS 3 TDS CAZ CAZ C 0 1 N N N 93.760 -7.064 80.562 -0.458 0.885 9.993 CAZ TDS 4 TDS CAY CAY C 0 1 N N N 93.704 -6.927 82.085 -0.148 -0.155 8.915 CAY TDS 5 TDS CAX CAX C 0 1 N N N 93.570 -5.464 82.514 -0.208 0.505 7.536 CAX TDS 6 TDS CAW CAW C 0 1 N N N 93.233 -5.380 84.006 0.100 -0.534 6.458 CAW TDS 7 TDS CAV CAV C 0 1 N N N 91.851 -4.765 84.245 0.040 0.126 5.079 CAV TDS 8 TDS CAU CAU C 0 1 N N N 91.281 -4.589 85.656 0.350 -0.914 4.001 CAU TDS 9 TDS CAT CAT C 0 1 N N N 91.476 -5.866 86.479 0.290 -0.253 2.622 CAT TDS 10 TDS CAS CAS C 0 1 N N N 90.627 -5.898 87.751 0.600 -1.294 1.544 CAS TDS 11 TDS CAR CAR C 0 1 N N N 90.874 -7.084 88.432 0.540 -0.633 0.165 CAR TDS 12 TDS CAQ CAQ C 0 1 N N N 89.985 -7.603 89.369 0.849 -1.673 -0.912 CAQ TDS 13 TDS CAP CAP C 0 1 Y N N 89.828 -6.843 90.524 0.790 -1.022 -2.270 CAP TDS 14 TDS OAO OAO O 0 1 Y N N 89.476 -5.538 90.345 -0.375 -1.012 -2.924 OAO TDS 15 TDS CAH CAH C 0 1 Y N N 89.929 -7.335 91.826 1.913 -0.481 -2.773 CAH TDS 16 TDS CAI CAI C 0 1 N N N 90.038 -8.833 92.125 3.197 -0.532 -1.986 CAI TDS 17 TDS CAG CAG C 0 1 Y N N 89.962 -6.439 92.887 1.882 0.137 -4.052 CAG TDS 18 TDS OAC OAC O 0 1 N N N 89.847 -6.848 94.043 2.882 0.638 -4.540 OAC TDS 19 TDS CAF CAF C 0 1 Y N N 90.136 -5.087 92.605 0.594 0.150 -4.764 CAF TDS 20 TDS CAN CAN C 0 1 Y N N 89.958 -4.677 91.285 -0.516 -0.446 -4.142 CAN TDS 21 TDS CAM CAM C 0 1 Y N N 90.249 -3.233 90.872 -1.743 -0.448 -4.793 CAM TDS 22 TDS OBD OBD O 0 1 N N N 90.119 -2.772 89.599 -2.827 -1.022 -4.203 OBD TDS 23 TDS CAL CAL C 0 1 Y N N 90.719 -2.363 92.038 -1.862 0.135 -6.048 CAL TDS 24 TDS OAK OAK O 0 1 N N N 90.959 -1.001 91.676 -3.065 0.131 -6.680 OAK TDS 25 TDS CAJ CAJ C 0 1 N N N 92.274 -0.873 91.129 -2.876 0.794 -7.932 CAJ TDS 26 TDS CAD CAD C 0 1 Y N N 90.851 -2.873 93.325 -0.763 0.725 -6.663 CAD TDS 27 TDS CAE CAE C 0 1 Y N N 90.562 -4.208 93.599 0.465 0.736 -6.029 CAE TDS 28 TDS OAB OAB O 0 1 N N N 90.711 -4.669 94.871 1.538 1.311 -6.630 OAB TDS 29 TDS CAA CAA C 0 1 N N N 89.501 -4.518 95.622 1.088 1.811 -7.890 CAA TDS 30 TDS HBC1 1HBC H 0 0 N N N 93.242 -10.392 78.275 -0.868 1.345 14.596 HBC1 TDS 31 TDS HBC2 2HBC H 0 0 N N N 94.070 -9.665 76.792 -1.382 -0.200 13.878 HBC2 TDS 32 TDS HBC3 3HBC H 0 0 N N N 94.921 -10.219 78.335 0.349 0.196 13.993 HBC3 TDS 33 TDS HBB1 1HBB H 0 0 N N N 92.994 -7.898 77.994 -1.705 1.672 12.285 HBB1 TDS 34 TDS HBB2 2HBB H 0 0 N N N 94.673 -7.725 78.054 0.025 2.069 12.400 HBB2 TDS 35 TDS HBA1 1HBA H 0 0 N N N 94.688 -9.045 80.367 0.599 -0.183 11.536 HBA1 TDS 36 TDS HBA2 2HBA H 0 0 N N N 92.994 -9.107 80.310 -1.132 -0.579 11.421 HBA2 TDS 37 TDS HAZ1 1HAZ H 0 0 N N N 92.892 -6.522 80.119 -1.456 1.292 9.828 HAZ1 TDS 38 TDS HAZ2 2HAZ H 0 0 N N N 94.613 -6.458 80.177 0.275 1.689 9.943 HAZ2 TDS 39 TDS HAY1 1HAY H 0 0 N N N 94.581 -7.415 82.571 0.848 -0.562 9.079 HAY1 TDS 40 TDS HAY2 2HAY H 0 0 N N N 92.893 -7.555 82.521 -0.882 -0.959 8.964 HAY2 TDS 41 TDS HAX1 1HAX H 0 0 N N N 92.831 -4.912 81.888 -1.206 0.913 7.372 HAX1 TDS 42 TDS HAX2 2HAX H 0 0 N N N 94.478 -4.870 82.258 0.525 1.310 7.486 HAX2 TDS 43 TDS HAW1 1HAW H 0 0 N N N 94.024 -4.832 84.570 1.098 -0.942 6.622 HAW1 TDS 44 TDS HAW2 2HAW H 0 0 N N N 93.324 -6.376 84.499 -0.633 -1.339 6.507 HAW2 TDS 45 TDS HAV1 1HAV H 0 0 N N N 91.110 -5.346 83.647 -0.956 0.533 4.915 HAV1 TDS 46 TDS HAV2 2HAV H 0 0 N N N 91.828 -3.771 83.741 0.774 0.930 5.029 HAV2 TDS 47 TDS HAU1 1HAU H 0 0 N N N 90.213 -4.270 85.634 1.348 -1.322 4.165 HAU1 TDS 48 TDS HAU2 2HAU H 0 0 N N N 91.711 -3.697 86.168 -0.383 -1.718 4.051 HAU2 TDS 49 TDS HAT1 1HAT H 0 0 N N N 92.554 -6.024 86.717 -0.707 0.154 2.458 HAT1 TDS 50 TDS HAT2 2HAT H 0 0 N N N 91.291 -6.772 85.856 1.024 0.550 2.573 HAT2 TDS 51 TDS HAS1 1HAS H 0 0 N N N 89.542 -5.748 87.541 1.597 -1.701 1.708 HAS1 TDS 52 TDS HAS2 2HAS H 0 0 N N N 90.789 -5.000 88.391 -0.133 -2.098 1.594 HAS2 TDS 53 TDS HAR1 1HAR H 0 0 N N N 91.869 -6.989 88.927 -0.457 -0.225 0.001 HAR1 TDS 54 TDS HAR2 2HAR H 0 0 N N N 91.064 -7.877 87.672 1.274 0.171 0.116 HAR2 TDS 55 TDS HAQ1 1HAQ H 0 0 N N N 90.274 -8.647 89.634 1.847 -2.081 -0.747 HAQ1 TDS 56 TDS HAQ2 2HAQ H 0 0 N N N 88.993 -7.788 88.895 0.116 -2.477 -0.862 HAQ2 TDS 57 TDS HAI1 1HAI H 0 0 N N N 90.902 -9.233 91.544 3.991 -0.046 -2.554 HAI1 TDS 58 TDS HAI2 2HAI H 0 0 N N N 90.119 -9.226 93.165 3.062 -0.016 -1.036 HAI2 TDS 59 TDS HAI3 3HAI H 0 0 N N N 89.173 -9.340 91.637 3.468 -1.571 -1.800 HAI3 TDS 60 TDS HBD HBD H 0 1 N N N 90.300 -1.875 89.343 -2.837 -1.949 -4.479 HBD TDS 61 TDS HAJ1 1HAJ H 0 0 N N N 92.444 -1.571 90.276 -3.819 0.815 -8.478 HAJ1 TDS 62 TDS HAJ2 2HAJ H 0 0 N N N 92.461 0.189 90.847 -2.536 1.814 -7.755 HAJ2 TDS 63 TDS HAJ3 3HAJ H 0 0 N N N 93.056 -1.269 91.818 -2.128 0.258 -8.517 HAJ3 TDS 64 TDS HAD HAD H 0 1 N N N 91.189 -2.210 94.139 -0.870 1.175 -7.638 HAD TDS 65 TDS HAA1 1HAA H 0 0 N N N 88.637 -5.002 95.109 1.920 2.284 -8.412 HAA1 TDS 66 TDS HAA2 2HAA H 0 0 N N N 89.623 -4.896 96.664 0.703 0.987 -8.492 HAA2 TDS 67 TDS HAA3 3HAA H 0 0 N N N 89.139 -3.463 95.608 0.296 2.543 -7.729 HAA3 TDS 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TDS CBC CBB SING N N 1 TDS CBC HBC1 SING N N 2 TDS CBC HBC2 SING N N 3 TDS CBC HBC3 SING N N 4 TDS CBB CBA SING N N 5 TDS CBB HBB1 SING N N 6 TDS CBB HBB2 SING N N 7 TDS CBA CAZ SING N N 8 TDS CBA HBA1 SING N N 9 TDS CBA HBA2 SING N N 10 TDS CAZ CAY SING N N 11 TDS CAZ HAZ1 SING N N 12 TDS CAZ HAZ2 SING N N 13 TDS CAY CAX SING N N 14 TDS CAY HAY1 SING N N 15 TDS CAY HAY2 SING N N 16 TDS CAX CAW SING N N 17 TDS CAX HAX1 SING N N 18 TDS CAX HAX2 SING N N 19 TDS CAW CAV SING N N 20 TDS CAW HAW1 SING N N 21 TDS CAW HAW2 SING N N 22 TDS CAV CAU SING N N 23 TDS CAV HAV1 SING N N 24 TDS CAV HAV2 SING N N 25 TDS CAU CAT SING N N 26 TDS CAU HAU1 SING N N 27 TDS CAU HAU2 SING N N 28 TDS CAT CAS SING N N 29 TDS CAT HAT1 SING N N 30 TDS CAT HAT2 SING N N 31 TDS CAS CAR SING N N 32 TDS CAS HAS1 SING N N 33 TDS CAS HAS2 SING N N 34 TDS CAR CAQ SING N N 35 TDS CAR HAR1 SING N N 36 TDS CAR HAR2 SING N N 37 TDS CAQ CAP SING N N 38 TDS CAQ HAQ1 SING N N 39 TDS CAQ HAQ2 SING N N 40 TDS CAP OAO SING Y N 41 TDS CAP CAH DOUB Y N 42 TDS OAO CAN SING Y N 43 TDS CAH CAI SING N N 44 TDS CAH CAG SING Y N 45 TDS CAI HAI1 SING N N 46 TDS CAI HAI2 SING N N 47 TDS CAI HAI3 SING N N 48 TDS CAG OAC DOUB N N 49 TDS CAG CAF SING Y N 50 TDS CAF CAN DOUB Y N 51 TDS CAF CAE SING Y N 52 TDS CAN CAM SING Y N 53 TDS CAM OBD SING N N 54 TDS CAM CAL DOUB Y N 55 TDS OBD HBD SING N N 56 TDS CAL OAK SING N N 57 TDS CAL CAD SING Y N 58 TDS OAK CAJ SING N N 59 TDS CAJ HAJ1 SING N N 60 TDS CAJ HAJ2 SING N N 61 TDS CAJ HAJ3 SING N N 62 TDS CAD CAE DOUB Y N 63 TDS CAD HAD SING N N 64 TDS CAE OAB SING N N 65 TDS OAB CAA SING N N 66 TDS CAA HAA1 SING N N 67 TDS CAA HAA2 SING N N 68 TDS CAA HAA3 SING N N 69 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TDS SMILES ACDLabs 10.04 "O=C1c2c(OC(=C1C)CCCCCCCCCCCCC)c(O)c(OC)cc2OC" TDS SMILES_CANONICAL CACTVS 3.341 "CCCCCCCCCCCCCC1=C(C)C(=O)c2c(OC)cc(OC)c(O)c2O1" TDS SMILES CACTVS 3.341 "CCCCCCCCCCCCCC1=C(C)C(=O)c2c(OC)cc(OC)c(O)c2O1" TDS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCCCC1=C(C(=O)c2c(cc(c(c2O1)O)OC)OC)C" TDS SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCCCCCCCCCC1=C(C(=O)c2c(cc(c(c2O1)O)OC)OC)C" TDS InChI InChI 1.03 "InChI=1S/C25H38O5/c1-5-6-7-8-9-10-11-12-13-14-15-16-19-18(2)23(26)22-20(28-3)17-21(29-4)24(27)25(22)30-19/h17,27H,5-16H2,1-4H3" TDS InChIKey InChI 1.03 LSHATXKKRQGSEC-UHFFFAOYSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TDS "SYSTEMATIC NAME" ACDLabs 10.04 "8-hydroxy-5,7-dimethoxy-3-methyl-2-tridecyl-4H-chromen-4-one" TDS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "8-hydroxy-5,7-dimethoxy-3-methyl-2-tridecyl-chromen-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TDS "Create component" 2003-10-02 PDBJ TDS "Modify descriptor" 2011-06-04 RCSB TDS "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TDS _pdbx_chem_comp_synonyms.name TRIDECYL-STIGMATELLIN _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##