data_TDW # _chem_comp.id TDW _chem_comp.name "2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-[(1S)-1-oxidanylethyl]-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H23 N4 O8 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2013-02-08 _chem_comp.pdbx_modified_date 2013-11-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 469.367 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TDW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZHV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TDW S1 S1 S 0 1 Y N N -8.364 16.092 41.811 1.374 1.969 -0.970 S1 TDW 1 TDW C2 C2 C 0 1 Y N N -9.213 15.115 40.829 2.774 1.661 -0.038 C2 TDW 2 TDW N3 N3 N 1 1 Y N N -9.616 13.896 41.502 2.692 0.499 0.517 N3 TDW 3 TDW C4 C4 C 0 1 Y N N -9.263 13.959 42.853 1.604 -0.205 0.280 C4 TDW 4 TDW C5 C5 C 0 1 Y N N -8.543 15.120 43.159 0.718 0.397 -0.519 C5 TDW 5 TDW C6 C6 C 0 1 N N N -8.009 15.464 44.559 -0.608 -0.169 -0.958 C6 TDW 6 TDW C7 C7 C 0 1 N N N -6.503 15.600 44.505 -1.692 0.234 0.044 C7 TDW 7 TDW O7 O7 O 0 1 N N N -5.882 15.574 45.819 -2.949 -0.303 -0.372 O7 TDW 8 TDW PA PA P 0 1 N N N -4.275 15.767 45.980 -4.315 -0.075 0.449 PA TDW 9 TDW PB PB P 0 1 N N N -4.127 18.634 44.837 -7.141 -0.484 -0.344 PB TDW 10 TDW "N1'" "N1'" N 0 1 Y N N -8.932 9.245 41.375 5.510 -1.529 -1.544 "N1'" TDW 11 TDW O1A O1A O 0 1 N N N -3.443 14.584 45.655 -4.540 1.375 0.640 O1A TDW 12 TDW O1B O1B O 0 1 N N N -4.328 19.378 46.112 -7.796 -1.119 -1.670 O1B TDW 13 TDW "C2'" "C2'" C 0 1 Y N N -7.873 9.269 40.557 6.617 -1.972 -0.984 "C2'" TDW 14 TDW C27 C27 C 0 1 N N S -9.787 15.580 39.459 3.935 2.609 0.113 C27 TDW 15 TDW O28 O28 O 0 1 N N N -9.535 14.794 38.299 4.283 3.144 -1.166 O28 TDW 16 TDW C29 C29 C 0 1 N N N -11.261 15.923 39.577 3.544 3.750 1.054 C29 TDW 17 TDW O2A O2A O 0 1 N N N -4.174 16.330 47.402 -4.204 -0.794 1.885 O2A TDW 18 TDW O2B O2B O 0 1 N N N -2.805 18.928 44.154 -7.760 -1.203 0.957 O2B TDW 19 TDW "N3'" "N3'" N 0 1 Y N N -7.503 10.301 39.791 6.855 -1.818 0.303 "N3'" TDW 20 TDW O3A O3A O 0 1 N N N -4.081 17.107 45.205 -5.547 -0.706 -0.373 O3A TDW 21 TDW O3B O3B O 0 1 N N N -5.310 18.679 43.854 -7.437 0.966 -0.294 O3B TDW 22 TDW "C4'" "C4'" C 0 1 Y N N -8.238 11.431 39.861 5.975 -1.202 1.087 "C4'" TDW 23 TDW "N4'" "N4'" N 0 1 N N N -7.806 12.474 39.144 6.228 -1.042 2.440 "N4'" TDW 24 TDW "C5'" "C5'" C 0 1 Y N N -9.380 11.512 40.713 4.791 -0.720 0.525 "C5'" TDW 25 TDW "C6'" "C6'" C 0 1 Y N N -9.656 10.371 41.429 4.584 -0.905 -0.828 "C6'" TDW 26 TDW "C7'" "C7'" C 0 1 N N N -10.269 12.723 40.883 3.764 -0.016 1.374 "C7'" TDW 27 TDW CM2 CM2 C 0 1 N N N -7.001 8.057 40.530 7.639 -2.675 -1.839 CM2 TDW 28 TDW CM4 CM4 C 0 1 N N N -9.761 12.965 43.857 1.377 -1.576 0.863 CM4 TDW 29 TDW H6 H6 H 0 1 N N N -8.451 16.413 44.897 -0.861 0.221 -1.944 H6 TDW 30 TDW H6A H6A H 0 1 N N N -8.280 14.662 45.262 -0.542 -1.257 -1.003 H6A TDW 31 TDW H7 H7 H 0 1 N N N -6.097 14.769 43.909 -1.439 -0.156 1.030 H7 TDW 32 TDW H7A H7A H 0 1 N N N -6.255 16.555 44.019 -1.758 1.321 0.089 H7A TDW 33 TDW HO1B HO1B H 0 0 N N N -5.190 19.777 46.114 -8.757 -1.022 -1.720 HO1B TDW 34 TDW H27 H27 H 0 1 N N N -9.293 16.545 39.274 4.790 2.074 0.527 H27 TDW 35 TDW HO28 HO28 H 0 0 N N N -9.945 15.201 37.545 5.024 3.764 -1.145 HO28 TDW 36 TDW H29 H29 H 0 1 N N N -11.642 16.248 38.598 4.384 4.436 1.163 H29 TDW 37 TDW H29A H29A H 0 0 N N N -11.818 15.035 39.911 2.689 4.285 0.640 H29A TDW 38 TDW H29B H29B H 0 0 N N N -11.391 16.734 40.308 3.279 3.342 2.029 H29B TDW 39 TDW HO2A HO2A H 0 0 N N N -3.557 15.812 47.905 -4.056 -1.749 1.837 HO2A TDW 40 TDW HO2B HO2B H 0 0 N N N -2.954 19.088 43.230 -7.604 -2.156 0.991 HO2B TDW 41 TDW "HN4'" "HN4'" H 0 0 N N N -6.971 12.221 38.656 7.090 -1.297 2.805 "HN4'" TDW 42 TDW HN4A HN4A H 0 0 N N N -8.509 12.739 38.485 5.544 -0.674 3.021 HN4A TDW 43 TDW "H6'" "H6'" H 0 1 N N N -10.517 10.383 42.081 3.681 -0.545 -1.297 "H6'" TDW 44 TDW "H7'" "H7'" H 0 1 N N N -11.122 12.434 41.515 4.236 0.812 1.903 "H7'" TDW 45 TDW "H7'A" "H7'A" H 0 0 N N N -10.634 13.021 39.889 3.346 -0.717 2.096 "H7'A" TDW 46 TDW HM2 HM2 H 0 1 N N N -7.397 7.304 41.227 8.344 -1.945 -2.237 HM2 TDW 47 TDW HM2A HM2A H 0 0 N N N -6.983 7.641 39.512 8.177 -3.406 -1.235 HM2A TDW 48 TDW HM2B HM2B H 0 0 N N N -5.980 8.333 40.831 7.137 -3.183 -2.662 HM2B TDW 49 TDW HM4 HM4 H 0 1 N N N -9.027 12.153 43.965 0.876 -1.483 1.827 HM4 TDW 50 TDW HM4A HM4A H 0 0 N N N -9.902 13.463 44.828 0.754 -2.160 0.185 HM4A TDW 51 TDW HM4B HM4B H 0 0 N N N -10.721 12.549 43.516 2.335 -2.077 0.998 HM4B TDW 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TDW C2 S1 SING Y N 1 TDW S1 C5 SING Y N 2 TDW C27 C2 SING N N 3 TDW C2 N3 DOUB Y N 4 TDW "C7'" N3 SING N N 5 TDW N3 C4 SING Y N 6 TDW C4 C5 DOUB Y N 7 TDW C4 CM4 SING N N 8 TDW C5 C6 SING N N 9 TDW C7 C6 SING N N 10 TDW C6 H6 SING N N 11 TDW C6 H6A SING N N 12 TDW C7 O7 SING N N 13 TDW C7 H7 SING N N 14 TDW C7 H7A SING N N 15 TDW O7 PA SING N N 16 TDW O3A PA SING N N 17 TDW O1A PA DOUB N N 18 TDW PA O2A SING N N 19 TDW O3B PB DOUB N N 20 TDW O2B PB SING N N 21 TDW PB O3A SING N N 22 TDW PB O1B SING N N 23 TDW "C2'" "N1'" DOUB Y N 24 TDW "N1'" "C6'" SING Y N 25 TDW O1B HO1B SING N N 26 TDW "N3'" "C2'" SING Y N 27 TDW CM2 "C2'" SING N N 28 TDW O28 C27 SING N N 29 TDW C27 C29 SING N N 30 TDW C27 H27 SING N N 31 TDW O28 HO28 SING N N 32 TDW C29 H29 SING N N 33 TDW C29 H29A SING N N 34 TDW C29 H29B SING N N 35 TDW O2A HO2A SING N N 36 TDW O2B HO2B SING N N 37 TDW "N3'" "C4'" DOUB Y N 38 TDW "N4'" "C4'" SING N N 39 TDW "C4'" "C5'" SING Y N 40 TDW "N4'" "HN4'" SING N N 41 TDW "N4'" HN4A SING N N 42 TDW "C5'" "C7'" SING N N 43 TDW "C5'" "C6'" DOUB Y N 44 TDW "C6'" "H6'" SING N N 45 TDW "C7'" "H7'" SING N N 46 TDW "C7'" "H7'A" SING N N 47 TDW CM2 HM2 SING N N 48 TDW CM2 HM2A SING N N 49 TDW CM2 HM2B SING N N 50 TDW CM4 HM4 SING N N 51 TDW CM4 HM4A SING N N 52 TDW CM4 HM4B SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TDW SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OCCc1sc(C(O)C)n(c1C)Cc2cnc(nc2N)C" TDW InChI InChI 1.03 "InChI=1S/C14H24N4O8P2S/c1-8-12(4-5-25-28(23,24)26-27(20,21)22)29-14(9(2)19)18(8)7-11-6-16-10(3)17-13(11)15/h6,9,18-19H,4-5,7H2,1-3H3,(H,23,24)(H2,15,16,17)(H2,20,21,22)/t9-/m0/s1" TDW InChIKey InChI 1.03 WHPLAPKWYDKPQH-VIFPVBQESA-N TDW SMILES_CANONICAL CACTVS 3.370 "C[C@H](O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N" TDW SMILES CACTVS 3.370 "C[CH](O)c1sc(CCO[P](O)(=O)O[P](O)(O)=O)c(C)[n+]1Cc2cnc(C)nc2N" TDW SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)[C@H](C)O)CCOP(=O)(O)OP(=O)(O)O" TDW SMILES "OpenEye OEToolkits" 1.7.6 "Cc1c(sc([n+]1Cc2cnc(nc2N)C)C(C)O)CCOP(=O)(O)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TDW "SYSTEMATIC NAME" ACDLabs 12.01 "2-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-[(1S)-1-hydroxyethyl]-4-methyl-1,3lambda~5~-thiazol-5-yl}ethyl trihydrogen diphosphate" TDW "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-2-[(1S)-1-oxidanylethyl]-1,3-thiazol-3-ium-5-yl]ethyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TDW "Create component" 2013-02-08 EBI TDW "Other modification" 2013-02-22 EBI TDW "Initial release" 2013-11-13 RCSB #