data_TFE # _chem_comp.id TFE _chem_comp.name ;2'-O-[2-(TRIFLUORO)ETHYL] THYMIDINE-5'-MONOPHOSPHATE ; _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H16 F3 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id DT _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-12-17 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 420.232 _chem_comp.one_letter_code T _chem_comp.three_letter_code TFE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1Y8L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TFE P P P 0 1 N N N -4.643 6.001 7.252 2.787 0.324 -4.407 P TFE 1 TFE OP1 O1P O 0 1 N N N -5.860 6.727 6.783 3.659 1.172 -5.286 OP1 TFE 2 TFE OP2 O2P O 0 1 N N N -4.804 4.743 8.007 1.198 0.588 -4.548 OP2 TFE 3 TFE "O5'" O5* O 0 1 N N N -3.698 5.763 6.003 3.063 0.476 -2.819 "O5'" TFE 4 TFE "C5'" C5* C 0 1 N N N -3.406 6.846 5.122 2.282 -0.292 -1.921 "C5'" TFE 5 TFE "C4'" C4* C 0 1 N N R -2.360 6.432 4.141 2.725 0.023 -0.498 "C4'" TFE 6 TFE "O4'" O4* O 0 1 N N N -1.083 6.257 4.812 2.470 1.422 -0.246 "O4'" TFE 7 TFE "C1'" C1* C 0 1 N N R -0.360 5.221 4.168 1.373 1.543 0.675 "C1'" TFE 8 TFE N1 N1 N 0 1 N N N -0.135 4.119 5.124 0.452 2.524 0.177 N1 TFE 9 TFE C6 C6 C 0 1 N N N -0.959 3.879 6.205 0.309 2.663 -1.199 C6 TFE 10 TFE C2 C2 C 0 1 N N N 0.953 3.328 4.860 -0.300 3.336 1.055 C2 TFE 11 TFE O2 O2 O 0 1 N N N 1.642 3.481 3.866 -0.225 3.269 2.283 O2 TFE 12 TFE N3 N3 N 0 1 N N N 1.179 2.334 5.773 -1.159 4.248 0.431 N3 TFE 13 TFE C4 C4 C 0 1 N N N 0.401 2.028 6.871 -1.338 4.427 -0.932 C4 TFE 14 TFE O4 O4 O 0 1 N N N 0.704 1.086 7.583 -2.112 5.251 -1.413 O4 TFE 15 TFE C5 C5 C 0 1 N N N -0.761 2.885 7.071 -0.514 3.537 -1.792 C5 TFE 16 TFE C5M C5M C 0 1 N N N -1.677 2.619 8.225 -0.651 3.669 -3.275 C5M TFE 17 TFE "C2'" C2* C 0 1 N N R -1.200 4.721 2.995 0.748 0.163 0.786 "C2'" TFE 18 TFE "O2'" O2* O 0 1 N N N -0.950 5.530 1.850 0.137 -0.058 2.041 "O2'" TFE 19 TFE "CB'" "CB'" C 0 1 N N N 0.370 5.493 1.338 -0.332 -1.396 2.174 "CB'" TFE 20 TFE "CC'" "CC'" C 0 1 N N N 0.386 6.251 0.083 -0.983 -1.558 3.522 "CC'" TFE 21 TFE "FD'" "FD'" F 0 1 N N N 1.565 6.125 -0.494 -0.103 -1.289 4.511 "FD'" TFE 22 TFE "FE'" "FE'" F 0 1 N N N -0.532 5.806 -0.757 -1.431 -2.818 3.702 "FE'" TFE 23 TFE "FF'" "FF'" F 0 1 N N N 0.123 7.537 0.259 -2.029 -0.717 3.665 "FF'" TFE 24 TFE "C3'" C3* C 0 1 N N R -2.596 5.092 3.466 1.940 -0.742 0.560 "C3'" TFE 25 TFE "O3'" O3* O 0 1 N N N -3.552 5.156 2.418 2.742 -0.809 1.739 "O3'" TFE 26 TFE OP3 O3P O 0 1 N Y N ? ? ? 2.921 -1.270 -4.647 OP3 TFE 27 TFE HOP2 2HOP H 0 0 N N N -4.029 4.281 8.306 0.799 0.616 -5.443 HOP2 TFE 28 TFE "H5'" 1H5* H 0 1 N N N -3.119 7.771 5.675 1.229 -0.035 -2.051 "H5'" TFE 29 TFE "H5''" 2H5* H 0 0 N N N -4.322 7.236 4.619 2.428 -1.352 -2.133 "H5''" TFE 30 TFE "H4'" H4* H 0 1 N N N -2.385 7.248 3.382 3.804 -0.139 -0.410 "H4'" TFE 31 TFE "H1'" H1* H 0 1 N N N 0.626 5.594 3.806 1.754 1.910 1.633 "H1'" TFE 32 TFE H6 H6 H 0 1 N N N -1.834 4.525 6.389 0.928 1.995 -1.790 H6 TFE 33 TFE HN3 HN3 H 0 1 N N N 2.011 1.764 5.620 -1.709 4.843 1.045 HN3 TFE 34 TFE H71 1H5M H 0 1 N N N -2.707 2.505 7.815 -1.057 2.748 -3.690 H71 TFE 35 TFE H72 2H5M H 0 1 N N N -1.511 1.788 8.949 0.324 3.866 -3.719 H72 TFE 36 TFE H73 3H5M H 0 1 N N N -1.758 3.563 8.812 -1.320 4.497 -3.510 H73 TFE 37 TFE "H2'" H2* H 0 1 N N N -1.019 3.651 2.738 -0.000 0.004 -0.000 "H2'" TFE 38 TFE "HB'1" "1HB'" H 0 0 N N N 0.760 4.455 1.221 0.518 -2.078 2.073 "HB'1" TFE 39 TFE "HB'2" "2HB'" H 0 0 N N N 1.129 5.854 2.071 -1.049 -1.598 1.373 "HB'2" TFE 40 TFE "H3'" H3* H 0 1 N N N -3.045 4.327 4.142 1.675 -1.764 0.277 "H3'" TFE 41 TFE "HO3'" H3T H 0 0 N Y N -3.700 4.318 1.996 3.447 -0.153 1.628 "HO3'" TFE 42 TFE HOP3 3HOP H 0 0 N N N 0.775 -0.462 0.299 2.886 -1.617 -5.563 HOP3 TFE 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TFE P OP1 DOUB N N 1 TFE P OP2 SING N N 2 TFE P "O5'" SING N N 3 TFE P OP3 SING N N 4 TFE OP2 HOP2 SING N N 5 TFE "O5'" "C5'" SING N N 6 TFE "C5'" "C4'" SING N N 7 TFE "C5'" "H5'" SING N N 8 TFE "C5'" "H5''" SING N N 9 TFE "C4'" "O4'" SING N N 10 TFE "C4'" "C3'" SING N N 11 TFE "C4'" "H4'" SING N N 12 TFE "O4'" "C1'" SING N N 13 TFE "C1'" N1 SING N N 14 TFE "C1'" "C2'" SING N N 15 TFE "C1'" "H1'" SING N N 16 TFE N1 C6 SING N N 17 TFE N1 C2 SING N N 18 TFE C6 C5 DOUB N N 19 TFE C6 H6 SING N N 20 TFE C2 O2 DOUB N N 21 TFE C2 N3 SING N N 22 TFE N3 C4 SING N N 23 TFE N3 HN3 SING N N 24 TFE C4 O4 DOUB N N 25 TFE C4 C5 SING N N 26 TFE C5 C5M SING N N 27 TFE C5M H71 SING N N 28 TFE C5M H72 SING N N 29 TFE C5M H73 SING N N 30 TFE "C2'" "O2'" SING N N 31 TFE "C2'" "C3'" SING N N 32 TFE "C2'" "H2'" SING N N 33 TFE "O2'" "CB'" SING N N 34 TFE "CB'" "CC'" SING N N 35 TFE "CB'" "HB'1" SING N N 36 TFE "CB'" "HB'2" SING N N 37 TFE "CC'" "FD'" SING N N 38 TFE "CC'" "FE'" SING N N 39 TFE "CC'" "FF'" SING N N 40 TFE "C3'" "O3'" SING N N 41 TFE "C3'" "H3'" SING N N 42 TFE "O3'" "HO3'" SING N N 43 TFE OP3 HOP3 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TFE SMILES ACDLabs 10.04 "FC(F)(F)COC2C(O)C(OC2N1C(=O)NC(=O)C(=C1)C)COP(=O)(O)O" TFE SMILES_CANONICAL CACTVS 3.341 "CC1=CN([C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2OCC(F)(F)F)C(=O)NC1=O" TFE SMILES CACTVS 3.341 "CC1=CN([CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2OCC(F)(F)F)C(=O)NC1=O" TFE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OCC(F)(F)F" TFE SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)OCC(F)(F)F" TFE InChI InChI 1.03 "InChI=1S/C12H16F3N2O9P/c1-5-2-17(11(20)16-9(5)19)10-8(24-4-12(13,14)15)7(18)6(26-10)3-25-27(21,22)23/h2,6-8,10,18H,3-4H2,1H3,(H,16,19,20)(H2,21,22,23)/t6-,7-,8-,10-/m1/s1" TFE InChIKey InChI 1.03 YTGJEPUSXBDJRJ-FDDDBJFASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TFE "SYSTEMATIC NAME" ACDLabs 10.04 ;5-methyl-2'-O-(2,2,2-trifluoroethyl)uridine 5'-(dihydrogen phosphate) ; TFE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)-4-(2,2,2-trifluoroethoxy)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TFE "Create component" 2004-12-17 PDBJ TFE "Modify linking type" 2011-06-04 RCSB TFE "Modify descriptor" 2011-06-04 RCSB #