data_TFO
#
_chem_comp.id TFO
_chem_comp.name "[2-(6-AMINO-9H-PURIN-9-YL)-1-METHYLETHOXY]METHYLPHOSPHONIC ACID"
_chem_comp.type "DNA LINKING"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C9 H14 N5 O4 P"
_chem_comp.mon_nstd_parent_comp_id DA
_chem_comp.pdbx_synonyms TENOFOVIR
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-04-21
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 287.212
_chem_comp.one_letter_code A
_chem_comp.three_letter_code TFO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1T03
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TFO P P P 0 1 N N N 30.290 141.781 -17.752 0.384 -2.532 3.272 P TFO 1
TFO OP2 O2P O 0 1 N N N 31.450 141.506 -16.961 -0.482 -3.623 2.452 OP2 TFO 2
TFO OP1 O1P O 0 1 N N N 29.444 140.759 -18.471 1.779 -2.957 3.624 OP1 TFO 3
TFO "C9'" "C9'" C 0 1 N N N 31.065 142.510 -18.997 0.280 -1.069 2.264 "C9'" TFO 4
TFO "O9'" "O9'" O 0 1 N N N 32.571 142.308 -18.915 1.010 -1.385 1.086 "O9'" TFO 5
TFO "C8'" "C8'" C 0 1 N N N 32.232 140.608 -20.832 1.840 -0.731 -1.038 "C8'" TFO 6
TFO "C7'" "C7'" C 0 1 N N R 33.021 141.996 -20.163 1.039 -0.291 0.180 "C7'" TFO 7
TFO "C6'" "C6'" C 0 1 N N N 34.499 141.773 -20.048 1.688 0.924 0.849 "C6'" TFO 8
TFO N9 N9 N 0 1 Y N N 35.634 141.815 -19.243 1.769 2.082 -0.040 N9 TFO 9
TFO C4 C4 C 0 1 Y N N 36.761 141.501 -19.853 0.832 3.050 -0.179 C4 TFO 10
TFO N3 N3 N 0 1 Y N N 36.703 141.138 -21.099 -0.349 3.159 0.448 N3 TFO 11
TFO C2 C2 C 0 1 Y N N 37.868 140.927 -21.581 -1.002 4.268 0.035 C2 TFO 12
TFO N1 N1 N 0 1 Y N N 39.021 141.087 -20.922 -0.611 5.196 -0.871 N1 TFO 13
TFO C6 C6 C 0 1 Y N N 39.041 141.516 -19.637 0.593 5.021 -1.466 C6 TFO 14
TFO N6 N6 N 0 1 N N N 40.271 141.746 -19.092 1.054 5.950 -2.415 N6 TFO 15
TFO C5 C5 C 0 1 Y N N 37.781 141.720 -19.015 1.363 3.913 -1.124 C5 TFO 16
TFO N7 N7 N 0 1 Y N N 37.323 142.143 -17.766 2.593 3.476 -1.545 N7 TFO 17
TFO C8 C8 C 0 1 Y N N 35.973 142.161 -17.907 2.807 2.367 -0.868 C8 TFO 18
TFO OP3 O3P O 0 1 N Y N ? ? ? -0.562 -2.179 4.534 OP3 TFO 19
TFO HOP2 2HOP H 0 0 N N N 31.982 142.149 -16.508 -0.548 -4.537 2.802 HOP2 TFO 20
TFO "H9'1" "1H9'" H 0 0 N N N 30.662 142.173 -19.980 0.737 -0.217 2.777 "H9'1" TFO 21
TFO "H9'2" "2H9'" H 0 0 N N N 30.802 143.591 -19.062 -0.761 -0.836 2.017 "H9'2" TFO 22
TFO "H8'1" "1H8'" H 0 0 N N N 32.600 140.352 -21.853 1.430 -1.648 -1.473 "H8'1" TFO 23
TFO "H8'2" "2H8'" H 0 0 N N N 32.315 139.732 -20.146 1.832 0.052 -1.803 "H8'2" TFO 24
TFO "H8'3" "3H8'" H 0 0 N N N 31.124 140.737 -20.827 2.890 -0.904 -0.776 "H8'3" TFO 25
TFO "H7'" "H7'" H 0 1 N N N 32.789 142.831 -20.864 0.009 -0.078 -0.126 "H7'" TFO 26
TFO "H6'1" "1H6'" H 0 0 N N N 34.553 140.712 -20.388 1.115 1.245 1.728 "H6'1" TFO 27
TFO "H6'2" "2H6'" H 0 0 N N N 34.848 142.410 -20.893 2.707 0.694 1.183 "H6'2" TFO 28
TFO H2 H2 H 0 1 N N N 37.879 140.586 -22.629 -1.970 4.439 0.493 H2 TFO 29
TFO HN61 1HN6 H 0 0 N N N 40.286 142.069 -18.124 1.133 5.675 -3.376 HN61 TFO 30
TFO HN62 2HN6 H 0 0 N N N 40.790 142.397 -19.679 1.388 6.843 -2.108 HN62 TFO 31
TFO H8 H8 H 0 1 N N N 35.279 142.410 -17.086 3.687 1.743 -0.944 H8 TFO 32
TFO HOP3 3HOP H 0 0 N N N -0.770 0.182 -0.525 -0.644 -2.829 5.264 HOP3 TFO 33
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TFO P OP2 SING N N 1
TFO P OP1 DOUB N N 2
TFO P "C9'" SING N N 3
TFO P OP3 SING N N 4
TFO OP2 HOP2 SING N N 5
TFO "C9'" "O9'" SING N N 6
TFO "C9'" "H9'1" SING N N 7
TFO "C9'" "H9'2" SING N N 8
TFO "O9'" "C7'" SING N N 9
TFO "C8'" "C7'" SING N N 10
TFO "C8'" "H8'1" SING N N 11
TFO "C8'" "H8'2" SING N N 12
TFO "C8'" "H8'3" SING N N 13
TFO "C7'" "C6'" SING N N 14
TFO "C7'" "H7'" SING N N 15
TFO "C6'" N9 SING N N 16
TFO "C6'" "H6'1" SING N N 17
TFO "C6'" "H6'2" SING N N 18
TFO N9 C4 SING Y N 19
TFO N9 C8 SING Y N 20
TFO C4 N3 SING Y N 21
TFO C4 C5 DOUB Y N 22
TFO N3 C2 DOUB Y N 23
TFO C2 N1 SING Y N 24
TFO C2 H2 SING N N 25
TFO N1 C6 DOUB Y N 26
TFO C6 N6 SING N N 27
TFO C6 C5 SING Y N 28
TFO N6 HN61 SING N N 29
TFO N6 HN62 SING N N 30
TFO C5 N7 SING Y N 31
TFO N7 C8 DOUB Y N 32
TFO C8 H8 SING N N 33
TFO OP3 HOP3 SING N N 34
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TFO SMILES ACDLabs 10.04 "O=P(O)(O)COC(C)Cn1c2ncnc(c2nc1)N"
TFO SMILES_CANONICAL CACTVS 3.341 "C[C@H](Cn1cnc2c(N)ncnc12)OC[P](O)(O)=O"
TFO SMILES CACTVS 3.341 "C[CH](Cn1cnc2c(N)ncnc12)OC[P](O)(O)=O"
TFO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H](Cn1cnc2c1ncnc2N)OCP(=O)(O)O"
TFO SMILES "OpenEye OEToolkits" 1.5.0 "CC(Cn1cnc2c1ncnc2N)OCP(=O)(O)O"
TFO InChI InChI 1.03 "InChI=1S/C9H14N5O4P/c1-6(18-5-19(15,16)17)2-14-4-13-7-8(10)11-3-12-9(7)14/h3-4,6H,2,5H2,1H3,(H2,10,11,12)(H2,15,16,17)/t6-/m1/s1"
TFO InChIKey InChI 1.03 SGOIRFVFHAKUTI-ZCFIWIBFSA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TFO "SYSTEMATIC NAME" ACDLabs 10.04 "{[(1R)-2-(6-amino-9H-purin-9-yl)-1-methylethoxy]methyl}phosphonic acid"
TFO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R)-1-(6-aminopurin-9-yl)propan-2-yl]oxymethylphosphonic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TFO "Create component" 2004-04-21 EBI
TFO "Modify descriptor" 2011-06-04 RCSB
TFO "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id TFO
_pdbx_chem_comp_synonyms.name TENOFOVIR
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##