data_TFO # _chem_comp.id TFO _chem_comp.name "[2-(6-AMINO-9H-PURIN-9-YL)-1-METHYLETHOXY]METHYLPHOSPHONIC ACID" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H14 N5 O4 P" _chem_comp.mon_nstd_parent_comp_id DA _chem_comp.pdbx_synonyms TENOFOVIR _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-04-21 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 287.212 _chem_comp.one_letter_code A _chem_comp.three_letter_code TFO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1T03 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TFO P P P 0 1 N N N 30.290 141.781 -17.752 0.384 -2.532 3.272 P TFO 1 TFO OP2 O2P O 0 1 N N N 31.450 141.506 -16.961 -0.482 -3.623 2.452 OP2 TFO 2 TFO OP1 O1P O 0 1 N N N 29.444 140.759 -18.471 1.779 -2.957 3.624 OP1 TFO 3 TFO "C9'" "C9'" C 0 1 N N N 31.065 142.510 -18.997 0.280 -1.069 2.264 "C9'" TFO 4 TFO "O9'" "O9'" O 0 1 N N N 32.571 142.308 -18.915 1.010 -1.385 1.086 "O9'" TFO 5 TFO "C8'" "C8'" C 0 1 N N N 32.232 140.608 -20.832 1.840 -0.731 -1.038 "C8'" TFO 6 TFO "C7'" "C7'" C 0 1 N N R 33.021 141.996 -20.163 1.039 -0.291 0.180 "C7'" TFO 7 TFO "C6'" "C6'" C 0 1 N N N 34.499 141.773 -20.048 1.688 0.924 0.849 "C6'" TFO 8 TFO N9 N9 N 0 1 Y N N 35.634 141.815 -19.243 1.769 2.082 -0.040 N9 TFO 9 TFO C4 C4 C 0 1 Y N N 36.761 141.501 -19.853 0.832 3.050 -0.179 C4 TFO 10 TFO N3 N3 N 0 1 Y N N 36.703 141.138 -21.099 -0.349 3.159 0.448 N3 TFO 11 TFO C2 C2 C 0 1 Y N N 37.868 140.927 -21.581 -1.002 4.268 0.035 C2 TFO 12 TFO N1 N1 N 0 1 Y N N 39.021 141.087 -20.922 -0.611 5.196 -0.871 N1 TFO 13 TFO C6 C6 C 0 1 Y N N 39.041 141.516 -19.637 0.593 5.021 -1.466 C6 TFO 14 TFO N6 N6 N 0 1 N N N 40.271 141.746 -19.092 1.054 5.950 -2.415 N6 TFO 15 TFO C5 C5 C 0 1 Y N N 37.781 141.720 -19.015 1.363 3.913 -1.124 C5 TFO 16 TFO N7 N7 N 0 1 Y N N 37.323 142.143 -17.766 2.593 3.476 -1.545 N7 TFO 17 TFO C8 C8 C 0 1 Y N N 35.973 142.161 -17.907 2.807 2.367 -0.868 C8 TFO 18 TFO OP3 O3P O 0 1 N Y N ? ? ? -0.562 -2.179 4.534 OP3 TFO 19 TFO HOP2 2HOP H 0 0 N N N 31.982 142.149 -16.508 -0.548 -4.537 2.802 HOP2 TFO 20 TFO "H9'1" "1H9'" H 0 0 N N N 30.662 142.173 -19.980 0.737 -0.217 2.777 "H9'1" TFO 21 TFO "H9'2" "2H9'" H 0 0 N N N 30.802 143.591 -19.062 -0.761 -0.836 2.017 "H9'2" TFO 22 TFO "H8'1" "1H8'" H 0 0 N N N 32.600 140.352 -21.853 1.430 -1.648 -1.473 "H8'1" TFO 23 TFO "H8'2" "2H8'" H 0 0 N N N 32.315 139.732 -20.146 1.832 0.052 -1.803 "H8'2" TFO 24 TFO "H8'3" "3H8'" H 0 0 N N N 31.124 140.737 -20.827 2.890 -0.904 -0.776 "H8'3" TFO 25 TFO "H7'" "H7'" H 0 1 N N N 32.789 142.831 -20.864 0.009 -0.078 -0.126 "H7'" TFO 26 TFO "H6'1" "1H6'" H 0 0 N N N 34.553 140.712 -20.388 1.115 1.245 1.728 "H6'1" TFO 27 TFO "H6'2" "2H6'" H 0 0 N N N 34.848 142.410 -20.893 2.707 0.694 1.183 "H6'2" TFO 28 TFO H2 H2 H 0 1 N N N 37.879 140.586 -22.629 -1.970 4.439 0.493 H2 TFO 29 TFO HN61 1HN6 H 0 0 N N N 40.286 142.069 -18.124 1.133 5.675 -3.376 HN61 TFO 30 TFO HN62 2HN6 H 0 0 N N N 40.790 142.397 -19.679 1.388 6.843 -2.108 HN62 TFO 31 TFO H8 H8 H 0 1 N N N 35.279 142.410 -17.086 3.687 1.743 -0.944 H8 TFO 32 TFO HOP3 3HOP H 0 0 N N N -0.770 0.182 -0.525 -0.644 -2.829 5.264 HOP3 TFO 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TFO P OP2 SING N N 1 TFO P OP1 DOUB N N 2 TFO P "C9'" SING N N 3 TFO P OP3 SING N N 4 TFO OP2 HOP2 SING N N 5 TFO "C9'" "O9'" SING N N 6 TFO "C9'" "H9'1" SING N N 7 TFO "C9'" "H9'2" SING N N 8 TFO "O9'" "C7'" SING N N 9 TFO "C8'" "C7'" SING N N 10 TFO "C8'" "H8'1" SING N N 11 TFO "C8'" "H8'2" SING N N 12 TFO "C8'" "H8'3" SING N N 13 TFO "C7'" "C6'" SING N N 14 TFO "C7'" "H7'" SING N N 15 TFO "C6'" N9 SING N N 16 TFO "C6'" "H6'1" SING N N 17 TFO "C6'" "H6'2" SING N N 18 TFO N9 C4 SING Y N 19 TFO N9 C8 SING Y N 20 TFO C4 N3 SING Y N 21 TFO C4 C5 DOUB Y N 22 TFO N3 C2 DOUB Y N 23 TFO C2 N1 SING Y N 24 TFO C2 H2 SING N N 25 TFO N1 C6 DOUB Y N 26 TFO C6 N6 SING N N 27 TFO C6 C5 SING Y N 28 TFO N6 HN61 SING N N 29 TFO N6 HN62 SING N N 30 TFO C5 N7 SING Y N 31 TFO N7 C8 DOUB Y N 32 TFO C8 H8 SING N N 33 TFO OP3 HOP3 SING N N 34 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TFO SMILES ACDLabs 10.04 "O=P(O)(O)COC(C)Cn1c2ncnc(c2nc1)N" TFO SMILES_CANONICAL CACTVS 3.341 "C[C@H](Cn1cnc2c(N)ncnc12)OC[P](O)(O)=O" TFO SMILES CACTVS 3.341 "C[CH](Cn1cnc2c(N)ncnc12)OC[P](O)(O)=O" TFO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@H](Cn1cnc2c1ncnc2N)OCP(=O)(O)O" TFO SMILES "OpenEye OEToolkits" 1.5.0 "CC(Cn1cnc2c1ncnc2N)OCP(=O)(O)O" TFO InChI InChI 1.03 "InChI=1S/C9H14N5O4P/c1-6(18-5-19(15,16)17)2-14-4-13-7-8(10)11-3-12-9(7)14/h3-4,6H,2,5H2,1H3,(H2,10,11,12)(H2,15,16,17)/t6-/m1/s1" TFO InChIKey InChI 1.03 SGOIRFVFHAKUTI-ZCFIWIBFSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TFO "SYSTEMATIC NAME" ACDLabs 10.04 "{[(1R)-2-(6-amino-9H-purin-9-yl)-1-methylethoxy]methyl}phosphonic acid" TFO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R)-1-(6-aminopurin-9-yl)propan-2-yl]oxymethylphosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TFO "Create component" 2004-04-21 EBI TFO "Modify descriptor" 2011-06-04 RCSB TFO "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id TFO _pdbx_chem_comp_synonyms.name TENOFOVIR _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##