data_TG1
#
_chem_comp.id TG1
_chem_comp.name
;OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z),
9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX
Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H50 O12"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms THAPSIGARGIN
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-05-30
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 650.754
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code TG1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1IWO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
TG1 C34 C34 C 0 1 N N N -4.756 -25.428 16.520 -4.172 -0.392 -3.915 C34 TG1 1
TG1 C11 C11 C 0 1 N N S -3.911 -25.202 15.215 -4.380 -0.480 -2.402 C11 TG1 2
TG1 C7 C7 C 0 1 N N R -4.793 -25.224 13.892 -3.134 0.016 -1.657 C7 TG1 3
TG1 C8 C8 C 0 1 N N S -5.636 -23.894 13.642 -3.279 1.332 -0.964 C8 TG1 4
TG1 C9 C9 C 0 1 N N N -6.512 -23.909 12.367 -1.952 2.020 -0.769 C9 TG1 5
TG1 C10 C10 C 0 1 N N S -5.876 -24.238 10.958 -1.048 1.209 0.161 C10 TG1 6
TG1 C1 C1 C 0 1 N N R -5.150 -25.659 10.712 -0.430 0.029 -0.471 C1 TG1 7
TG1 C2 C2 C 0 1 N N S -4.861 -25.967 9.191 0.949 -0.397 0.006 C2 TG1 8
TG1 O1 O1 O 0 1 N N N -5.184 -27.335 8.836 1.980 0.114 -0.879 O1 TG1 9
TG1 C13 C13 C 0 1 N N N -5.640 -27.483 7.489 3.178 0.376 -0.332 C13 TG1 10
TG1 O2 O2 O 0 1 N N N -6.048 -26.596 6.745 3.358 0.185 0.847 O2 TG1 11
TG1 C14 C14 C 0 1 N N N -5.493 -28.958 7.061 4.297 0.909 -1.189 C14 TG1 12
TG1 C15 C15 C 0 1 N N N -4.816 -29.187 5.703 5.543 1.120 -0.327 C15 TG1 13
TG1 C16 C16 C 0 1 N N N -5.616 -28.803 4.439 6.679 1.662 -1.197 C16 TG1 14
TG1 C17 C17 C 0 1 N N N -4.757 -28.055 3.385 7.925 1.873 -0.335 C17 TG1 15
TG1 C18 C18 C 0 1 N N N -4.428 -28.927 2.151 9.062 2.414 -1.204 C18 TG1 16
TG1 C19 C19 C 0 1 N N N -4.735 -28.284 0.802 10.308 2.625 -0.342 C19 TG1 17
TG1 C20 C20 C 0 1 N N N -6.086 -28.810 0.310 11.444 3.166 -1.212 C20 TG1 18
TG1 C3 C3 C 0 1 N N S -3.340 -25.914 8.994 0.878 -1.938 -0.070 C3 TG1 19
TG1 O3 O3 O 0 1 N N N -3.219 -24.575 8.314 1.230 -2.518 1.214 O3 TG1 20
TG1 C21 C21 C 0 1 N N N -2.344 -24.422 7.312 1.812 -3.734 1.197 C21 TG1 21
TG1 O4 O4 O 0 1 N N N -1.364 -25.269 7.025 2.019 -4.294 0.139 O4 TG1 22
TG1 C22 C22 C 0 1 N N N -2.784 -23.336 6.256 2.195 -4.382 2.459 C22 TG1 23
TG1 C23 C23 C 0 1 N N N -3.513 -24.000 5.143 1.939 -3.687 3.771 C23 TG1 24
TG1 C24 C24 C 0 1 N N N -2.596 -22.026 6.181 2.770 -5.582 2.443 C24 TG1 25
TG1 C25 C25 C 0 1 N N N -1.906 -21.085 7.129 3.026 -6.277 1.130 C25 TG1 26
TG1 C4 C4 C 0 1 N N N -2.795 -25.870 10.418 -0.550 -2.278 -0.418 C4 TG1 27
TG1 C26 C26 C 0 1 N N N -1.302 -25.859 10.610 -1.073 -3.685 -0.550 C26 TG1 28
TG1 C5 C5 C 0 1 N N N -3.772 -25.743 11.354 -1.275 -1.212 -0.590 C5 TG1 29
TG1 C6 C6 C 0 1 N N S -3.626 -25.542 12.907 -2.773 -1.147 -0.760 C6 TG1 30
TG1 O5 O5 O 0 1 N N N -3.012 -26.666 13.581 -3.335 -2.316 -1.412 O5 TG1 31
TG1 C12 C12 C 0 1 N N N -2.927 -26.333 14.898 -4.512 -1.932 -1.964 C12 TG1 32
TG1 O12 O12 O 0 1 N N N -2.172 -26.845 15.728 -5.496 -2.623 -2.088 O12 TG1 33
TG1 C31 C31 C 0 1 N N N -5.025 -23.001 10.505 -1.878 0.740 1.358 C31 TG1 34
TG1 O9 O9 O 0 1 N N N -7.012 -24.038 10.009 0.009 2.076 0.649 O9 TG1 35
TG1 C32 C32 C 0 1 N N N -8.168 -24.695 9.750 -0.367 3.161 1.346 C32 TG1 36
TG1 O10 O10 O 0 1 N N N -8.458 -25.819 10.131 -1.539 3.378 1.541 O10 TG1 37
TG1 C33 C33 C 0 1 N N N -9.028 -23.865 8.900 0.675 4.108 1.885 C33 TG1 38
TG1 O7 O7 O 0 1 N N N -4.778 -22.691 13.768 -3.893 1.116 0.334 O7 TG1 39
TG1 C27 C27 C 0 1 N N N -4.862 -21.852 14.908 -4.648 2.112 0.825 C27 TG1 40
TG1 O8 O8 O 0 1 N N N -5.653 -21.913 15.847 -4.791 3.130 0.191 O8 TG1 41
TG1 C28 C28 C 0 1 N N N -3.726 -20.879 14.863 -5.317 1.959 2.167 C28 TG1 42
TG1 C29 C29 C 0 1 N N N -4.255 -19.465 15.105 -6.110 3.228 2.488 C29 TG1 43
TG1 C30 C30 C 0 1 N N N -3.092 -18.659 15.632 -6.790 3.073 3.850 C30 TG1 44
TG1 O6 O6 O 0 1 N N N -5.696 -26.396 13.903 -2.084 0.144 -2.618 O6 TG1 45
TG1 O11 O11 O 0 1 N N N -2.962 -24.109 15.439 -5.531 0.271 -2.011 O11 TG1 46
TG1 H341 H341 H 0 0 N N N -4.092 -25.402 17.397 -3.320 -1.009 -4.201 H341 TG1 47
TG1 H342 H342 H 0 0 N N N -5.512 -24.634 16.609 -5.066 -0.748 -4.427 H342 TG1 48
TG1 H343 H343 H 0 0 N N N -5.256 -26.406 16.468 -3.981 0.643 -4.196 H343 TG1 49
TG1 HC8 HC8 H 0 1 N N N -6.384 -23.849 14.447 -3.928 1.976 -1.558 HC8 TG1 50
TG1 HC91 HC91 H 0 0 N N N -7.281 -24.677 12.538 -1.462 2.133 -1.736 HC91 TG1 51
TG1 HC92 HC92 H 0 0 N N N -6.934 -22.897 12.279 -2.119 3.006 -0.335 HC92 TG1 52
TG1 HC1 HC1 H 0 1 N N N -5.868 -26.368 11.150 -0.270 0.325 -1.508 HC1 TG1 53
TG1 HC2 HC2 H 0 1 N N N -5.449 -25.250 8.598 1.122 -0.066 1.030 HC2 TG1 54
TG1 H141 H141 H 0 0 N N N -4.884 -29.465 7.824 4.520 0.195 -1.981 H141 TG1 55
TG1 H142 H142 H 0 0 N N N -6.504 -29.388 7.004 3.996 1.859 -1.631 H142 TG1 56
TG1 H151 H151 H 0 0 N N N -3.897 -28.582 5.697 5.320 1.835 0.465 H151 TG1 57
TG1 H152 H152 H 0 0 N N N -4.599 -30.263 5.630 5.844 0.171 0.115 H152 TG1 58
TG1 H161 H161 H 0 0 N N N -6.002 -29.725 3.980 6.903 0.947 -1.989 H161 TG1 59
TG1 H162 H162 H 0 0 N N N -6.445 -28.145 4.740 6.378 2.611 -1.638 H162 TG1 60
TG1 H171 H171 H 0 0 N N N -5.317 -27.171 3.046 7.702 2.587 0.458 H171 TG1 61
TG1 H172 H172 H 0 0 N N N -3.811 -27.754 3.859 8.227 0.923 0.107 H172 TG1 62
TG1 H181 H181 H 0 0 N N N -3.351 -29.148 2.177 9.285 1.699 -1.997 H181 TG1 63
TG1 H182 H182 H 0 0 N N N -5.026 -29.847 2.225 8.760 3.364 -1.646 H182 TG1 64
TG1 H191 H191 H 0 0 N N N -4.778 -27.190 0.912 10.085 3.340 0.450 H191 TG1 65
TG1 H192 H192 H 0 0 N N N -3.948 -28.543 0.078 10.609 1.675 0.100 H192 TG1 66
TG1 H201 H201 H 0 0 N N N -6.324 -28.356 -0.663 11.667 2.452 -2.004 H201 TG1 67
TG1 H202 H202 H 0 0 N N N -6.036 -29.904 0.202 11.143 4.116 -1.654 H202 TG1 68
TG1 H203 H203 H 0 0 N N N -6.868 -28.548 1.038 12.332 3.317 -0.598 H203 TG1 69
TG1 HC3 HC3 H 0 1 N N N -2.836 -26.718 8.438 1.551 -2.306 -0.844 HC3 TG1 70
TG1 H231 H231 H 0 0 N N N -3.822 -23.246 4.404 0.951 -3.963 4.141 H231 TG1 71
TG1 H232 H232 H 0 0 N N N -2.854 -24.737 4.661 2.695 -3.988 4.496 H232 TG1 72
TG1 H233 H233 H 0 0 N N N -4.403 -24.509 5.540 1.984 -2.608 3.626 H233 TG1 73
TG1 H24 H24 H 0 1 N N N -3.004 -21.560 5.297 3.052 -6.059 3.370 H24 TG1 74
TG1 H251 H251 H 0 0 N N N -1.949 -20.062 6.727 3.499 -7.241 1.316 H251 TG1 75
TG1 H252 H252 H 0 0 N N N -2.409 -21.116 8.107 2.081 -6.430 0.609 H252 TG1 76
TG1 H253 H253 H 0 0 N N N -0.855 -21.388 7.247 3.684 -5.662 0.516 H253 TG1 77
TG1 H261 H261 H 0 0 N N N -1.070 -25.826 11.685 -0.267 -4.392 -0.358 H261 TG1 78
TG1 H262 H262 H 0 0 N N N -0.869 -26.769 10.169 -1.875 -3.843 0.170 H262 TG1 79
TG1 H263 H263 H 0 0 N N N -0.875 -24.973 10.116 -1.456 -3.836 -1.560 H263 TG1 80
TG1 HC6 HC6 H 0 1 N N N -3.069 -24.605 12.760 -3.246 -1.019 0.213 HC6 TG1 81
TG1 H311 H311 H 0 0 N N N -4.571 -23.207 9.524 -2.567 -0.041 1.038 H311 TG1 82
TG1 H312 H312 H 0 0 N N N -5.675 -22.117 10.430 -1.214 0.347 2.128 H312 TG1 83
TG1 H313 H313 H 0 0 N N N -4.232 -22.812 11.243 -2.443 1.581 1.760 H313 TG1 84
TG1 H331 H331 H 0 0 N N N -9.954 -24.412 8.670 1.667 3.750 1.611 H331 TG1 85
TG1 H332 H332 H 0 0 N N N -9.275 -22.932 9.428 0.516 5.100 1.462 H332 TG1 86
TG1 H333 H333 H 0 0 N N N -8.500 -23.628 7.965 0.593 4.158 2.970 H333 TG1 87
TG1 H281 H281 H 0 0 N N N -2.993 -21.135 15.643 -5.993 1.105 2.141 H281 TG1 88
TG1 H282 H282 H 0 0 N N N -3.243 -20.925 13.876 -4.560 1.800 2.934 H282 TG1 89
TG1 H291 H291 H 0 0 N N N -4.633 -19.029 14.168 -5.434 4.082 2.514 H291 TG1 90
TG1 H292 H292 H 0 0 N N N -5.076 -19.481 15.837 -6.868 3.387 1.720 H292 TG1 91
TG1 H301 H301 H 0 0 N N N -3.418 -17.626 15.825 -7.466 2.218 3.824 H301 TG1 92
TG1 H302 H302 H 0 0 N N N -2.728 -19.109 16.567 -6.032 2.914 4.618 H302 TG1 93
TG1 H303 H303 H 0 0 N N N -2.282 -18.655 14.888 -7.355 3.977 4.079 H303 TG1 94
TG1 HO6 HO6 H 0 1 N N N -6.219 -26.401 13.110 -2.269 0.782 -3.320 HO6 TG1 95
TG1 HO11 HO11 H 0 0 N N N -2.115 -24.468 15.676 -6.353 -0.021 -2.429 HO11 TG1 96
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
TG1 C34 C11 SING N N 1
TG1 C34 H341 SING N N 2
TG1 C34 H342 SING N N 3
TG1 C34 H343 SING N N 4
TG1 C11 C7 SING N N 5
TG1 C11 C12 SING N N 6
TG1 C11 O11 SING N N 7
TG1 C7 C8 SING N N 8
TG1 C7 C6 SING N N 9
TG1 C7 O6 SING N N 10
TG1 C8 C9 SING N N 11
TG1 C8 O7 SING N N 12
TG1 C8 HC8 SING N N 13
TG1 C9 C10 SING N N 14
TG1 C9 HC91 SING N N 15
TG1 C9 HC92 SING N N 16
TG1 C10 C1 SING N N 17
TG1 C10 C31 SING N N 18
TG1 C10 O9 SING N N 19
TG1 C1 C2 SING N N 20
TG1 C1 C5 SING N N 21
TG1 C1 HC1 SING N N 22
TG1 C2 O1 SING N N 23
TG1 C2 C3 SING N N 24
TG1 C2 HC2 SING N N 25
TG1 O1 C13 SING N N 26
TG1 C13 O2 DOUB N N 27
TG1 C13 C14 SING N N 28
TG1 C14 C15 SING N N 29
TG1 C14 H141 SING N N 30
TG1 C14 H142 SING N N 31
TG1 C15 C16 SING N N 32
TG1 C15 H151 SING N N 33
TG1 C15 H152 SING N N 34
TG1 C16 C17 SING N N 35
TG1 C16 H161 SING N N 36
TG1 C16 H162 SING N N 37
TG1 C17 C18 SING N N 38
TG1 C17 H171 SING N N 39
TG1 C17 H172 SING N N 40
TG1 C18 C19 SING N N 41
TG1 C18 H181 SING N N 42
TG1 C18 H182 SING N N 43
TG1 C19 C20 SING N N 44
TG1 C19 H191 SING N N 45
TG1 C19 H192 SING N N 46
TG1 C20 H201 SING N N 47
TG1 C20 H202 SING N N 48
TG1 C20 H203 SING N N 49
TG1 C3 O3 SING N N 50
TG1 C3 C4 SING N N 51
TG1 C3 HC3 SING N N 52
TG1 O3 C21 SING N N 53
TG1 C21 O4 DOUB N N 54
TG1 C21 C22 SING N N 55
TG1 C22 C23 SING N N 56
TG1 C22 C24 DOUB N Z 57
TG1 C23 H231 SING N N 58
TG1 C23 H232 SING N N 59
TG1 C23 H233 SING N N 60
TG1 C24 C25 SING N N 61
TG1 C24 H24 SING N N 62
TG1 C25 H251 SING N N 63
TG1 C25 H252 SING N N 64
TG1 C25 H253 SING N N 65
TG1 C4 C26 SING N N 66
TG1 C4 C5 DOUB N N 67
TG1 C26 H261 SING N N 68
TG1 C26 H262 SING N N 69
TG1 C26 H263 SING N N 70
TG1 C5 C6 SING N N 71
TG1 C6 O5 SING N N 72
TG1 C6 HC6 SING N N 73
TG1 O5 C12 SING N N 74
TG1 C12 O12 DOUB N N 75
TG1 C31 H311 SING N N 76
TG1 C31 H312 SING N N 77
TG1 C31 H313 SING N N 78
TG1 O9 C32 SING N N 79
TG1 C32 O10 DOUB N N 80
TG1 C32 C33 SING N N 81
TG1 C33 H331 SING N N 82
TG1 C33 H332 SING N N 83
TG1 C33 H333 SING N N 84
TG1 O7 C27 SING N N 85
TG1 C27 O8 DOUB N N 86
TG1 C27 C28 SING N N 87
TG1 C28 C29 SING N N 88
TG1 C28 H281 SING N N 89
TG1 C28 H282 SING N N 90
TG1 C29 C30 SING N N 91
TG1 C29 H291 SING N N 92
TG1 C29 H292 SING N N 93
TG1 C30 H301 SING N N 94
TG1 C30 H302 SING N N 95
TG1 C30 H303 SING N N 96
TG1 O6 HO6 SING N N 97
TG1 O11 HO11 SING N N 98
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
TG1 SMILES ACDLabs 12.01 "O=C3OC2C1=C(C(OC(=O)\C(=C/C)C)C(OC(=O)CCCCCCC)C1C(OC(=O)C)(CC(OC(=O)CCC)C2(O)C3(O)C)C)C"
TG1 SMILES_CANONICAL CACTVS 3.370 "CCCCCCCC(=O)O[C@@H]1[C@@H](OC(=O)\C(C)=C/C)C(=C2[C@@H]3OC(=O)[C@@](C)(O)[C@@]3(O)[C@H](C[C@](C)(OC(C)=O)[C@@H]12)OC(=O)CCC)C"
TG1 SMILES CACTVS 3.370 "CCCCCCCC(=O)O[CH]1[CH](OC(=O)C(C)=CC)C(=C2[CH]3OC(=O)[C](C)(O)[C]3(O)[CH](C[C](C)(OC(C)=O)[CH]12)OC(=O)CCC)C"
TG1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CCCCCCCC(=O)O[C@H]1[C@H]2C(=C([C@@H]1OC(=O)/C(=C\C)/C)C)[C@H]3[C@]([C@H](C[C@]2(C)OC(=O)C)OC(=O)CCC)([C@](C(=O)O3)(C)O)O"
TG1 SMILES "OpenEye OEToolkits" 1.7.0 "CCCCCCCC(=O)OC1C2C(=C(C1OC(=O)C(=CC)C)C)C3C(C(CC2(C)OC(=O)C)OC(=O)CCC)(C(C(=O)O3)(C)O)O"
TG1 InChI InChI 1.03 "InChI=1S/C34H50O12/c1-9-12-13-14-15-17-24(37)43-28-26-25(20(5)27(28)44-30(38)19(4)11-3)29-34(41,33(8,40)31(39)45-29)22(42-23(36)16-10-2)18-32(26,7)46-21(6)35/h11,22,26-29,40-41H,9-10,12-18H2,1-8H3/b19-11-/t22-,26+,27-,28-,29-,32-,33+,34+/m0/s1"
TG1 InChIKey InChI 1.03 IXFPJGBNCFXKPI-FSIHEZPISA-N
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
TG1 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,3aR,4S,6S,6aR,7S,8S,9bS)-6-(acetyloxy)-4-(butanoyloxy)-3,3a-dihydroxy-3,6,9-trimethyl-8-{[(2Z)-2-methylbut-2-enoyl]oxy}-2-oxo-2,3,3a,4,5,6,6a,7,8,9b-decahydroazuleno[4,5-b]furan-7-yl octanoate"
TG1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[(3S,3aR,4S,6S,6aR,7S,8S,9bS)-6-acetyloxy-4-butanoyloxy-3,3a-dihydroxy-3,6,9-trimethyl-8-[(Z)-2-methylbut-2-enoyl]oxy-2-oxo-4,5,6a,7,8,9b-hexahydroazuleno[4,5-b]furan-7-yl] octanoate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
TG1 "Create component" 2002-05-30 RCSB
TG1 "Modify synonyms" 2011-01-12 PDBJ
TG1 "Modify descriptor" 2011-06-04 RCSB
TG1 "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id TG1
_pdbx_chem_comp_synonyms.name THAPSIGARGIN
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##