data_TG8 # _chem_comp.id TG8 _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H22 N6 O11 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-22 _chem_comp.pdbx_modified_date 2021-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 560.348 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TG8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7BDL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TG8 CA7 C1 C 0 1 N N N 4.219 -30.251 10.832 5.470 -5.070 2.269 CA7 TG8 1 TG8 NA1 N1 N 0 1 N N N 3.410 -30.328 9.628 4.680 -4.040 1.590 NA1 TG8 2 TG8 CA6 C2 C 0 1 Y N N 3.996 -30.829 8.400 4.727 -3.928 0.207 CA6 TG8 3 TG8 CA5 C3 C 0 1 Y N N 5.233 -31.722 8.458 5.609 -4.710 -0.528 CA5 TG8 4 TG8 CA4 C4 C 0 1 Y N N 5.769 -32.180 7.347 5.654 -4.597 -1.902 CA4 TG8 5 TG8 CA3 C5 C 0 1 Y N N 5.153 -31.816 5.999 4.822 -3.705 -2.561 CA3 TG8 6 TG8 CA2 C6 C 0 1 Y N N 4.088 -31.045 5.952 3.941 -2.921 -1.850 CA2 TG8 7 TG8 CA1 C7 C 0 1 Y N N 3.461 -30.512 7.240 3.878 -3.028 -0.458 CA1 TG8 8 TG8 CA C8 C 0 1 N N N 2.219 -29.615 7.185 2.938 -2.193 0.308 CA TG8 9 TG8 OA O1 O 0 1 N N N 2.334 -28.460 6.947 2.960 -2.211 1.523 OA TG8 10 TG8 "O3'" O2 O 0 1 N N N 0.947 -30.169 7.409 2.052 -1.408 -0.338 "O3'" TG8 11 TG8 "C3'" C9 C 0 1 N N S -0.102 -29.869 6.435 1.156 -0.613 0.481 "C3'" TG8 12 TG8 "C2'" C10 C 0 1 N N R 0.082 -30.637 5.220 1.724 0.814 0.676 "C2'" TG8 13 TG8 "O2'" O3 O 0 1 N N N 1.424 -30.581 4.657 3.131 0.842 0.429 "O2'" TG8 14 TG8 "C4'" C11 C 0 1 N N R -1.381 -30.412 6.970 -0.184 -0.390 -0.246 "C4'" TG8 15 TG8 "C5'" C12 C 0 1 N N N -2.519 -29.512 6.639 -1.329 -0.979 0.581 "C5'" TG8 16 TG8 "O5'" O4 O 0 1 N N N -2.922 -29.680 5.307 -2.551 -0.872 -0.153 "O5'" TG8 17 TG8 PA P1 P 0 1 N N N -3.873 -28.531 4.600 -3.964 -1.393 0.416 PA TG8 18 TG8 O3A O5 O 0 1 N N N -3.790 -27.252 5.302 -3.917 -2.994 0.583 O3A TG8 19 TG8 O2A O6 O 0 1 N N N -3.347 -28.166 3.289 -4.228 -0.767 1.730 O2A TG8 20 TG8 O1A O7 O 0 1 N N N -5.433 -29.057 4.479 -5.136 -0.995 -0.613 O1A TG8 21 TG8 PB P2 P 0 1 N N N -6.755 -28.071 4.399 -6.734 -0.844 -0.484 PB TG8 22 TG8 O3B O8 O 0 1 N N N -7.956 -28.723 3.882 -7.401 -0.933 -1.947 O3B TG8 23 TG8 O2B O9 O 0 1 N N N -6.585 -26.896 3.548 -7.265 -1.932 0.367 O2B TG8 24 TG8 O1B O10 O 0 1 N N N -7.175 -27.532 5.690 -7.086 0.579 0.181 O1B TG8 25 TG8 "O4'" O11 O 0 1 N N N -1.575 -31.791 6.372 -0.361 1.029 -0.390 "O4'" TG8 26 TG8 "C1'" C13 C 0 1 N N R -0.244 -31.997 5.689 0.956 1.620 -0.403 "C1'" TG8 27 TG8 N9 N2 N 0 1 Y N N -0.262 -32.907 4.611 0.890 3.037 -0.040 N9 TG8 28 TG8 C8 C14 C 0 1 Y N N -0.827 -32.638 3.428 -0.132 3.654 0.619 C8 TG8 29 TG8 N7 N3 N 0 1 Y N N -0.626 -33.750 2.641 0.142 4.916 0.781 N7 TG8 30 TG8 C5 C15 C 0 1 Y N N 0.119 -34.697 3.471 1.353 5.188 0.240 C5 TG8 31 TG8 C4 C16 C 0 1 Y N N 0.313 -34.097 4.681 1.848 3.986 -0.294 C4 TG8 32 TG8 N3 N4 N 0 1 Y N N 0.959 -34.705 5.651 3.038 3.983 -0.886 N3 TG8 33 TG8 C2 C17 C 0 1 Y N N 1.436 -35.956 5.422 3.744 5.090 -0.977 C2 TG8 34 TG8 N1 N5 N 0 1 Y N N 1.247 -36.562 4.214 3.319 6.244 -0.496 N1 TG8 35 TG8 C6 C18 C 0 1 Y N N 0.592 -35.938 3.240 2.145 6.343 0.118 C6 TG8 36 TG8 N6 N6 N 0 1 N N N 0.389 -36.579 1.955 1.709 7.556 0.623 N6 TG8 37 TG8 H1 H1 H 0 1 N N N 3.612 -29.850 11.657 5.165 -6.054 1.914 H1 TG8 38 TG8 H2 H2 H 0 1 N N N 4.579 -31.256 11.096 6.528 -4.918 2.052 H2 TG8 39 TG8 H3 H3 H 0 1 N N N 5.079 -29.588 10.654 5.306 -5.003 3.344 H3 TG8 40 TG8 H4 H4 H 0 1 N N N 3.085 -29.402 9.437 4.124 -3.436 2.107 H4 TG8 41 TG8 H5 H5 H 0 1 N N N 5.669 -31.978 9.412 6.261 -5.407 -0.023 H5 TG8 42 TG8 H6 H6 H 0 1 N N N 6.643 -32.812 7.389 6.343 -5.207 -2.468 H6 TG8 43 TG8 H7 H7 H 0 1 N N N 5.590 -32.191 5.085 4.866 -3.625 -3.637 H7 TG8 44 TG8 H8 H8 H 0 1 N N N 3.654 -30.787 4.997 3.295 -2.228 -2.369 H8 TG8 45 TG8 H9 H9 H 0 1 N N N -0.177 -28.790 6.234 0.992 -1.095 1.445 H9 TG8 46 TG8 H10 H10 H 0 1 N N N -0.653 -30.323 4.464 1.498 1.189 1.675 H10 TG8 47 TG8 H11 H11 H 0 1 N N N 1.608 -29.696 4.363 3.517 1.728 0.451 H11 TG8 48 TG8 H12 H12 H 0 1 N N N -1.303 -30.508 8.063 -0.156 -0.861 -1.228 H12 TG8 49 TG8 H13 H13 H 0 1 N N N -2.208 -28.468 6.792 -1.122 -2.028 0.791 H13 TG8 50 TG8 H14 H14 H 0 1 N N N -3.365 -29.743 7.303 -1.419 -0.431 1.518 H14 TG8 51 TG8 H15 H15 H 0 1 N N N -3.433 -26.593 4.719 -3.748 -3.471 -0.241 H15 TG8 52 TG8 H16 H16 H 0 1 N N N -8.298 -28.223 3.150 -8.365 -0.849 -1.945 H16 TG8 53 TG8 H17 H17 H 0 1 N N N -7.225 -26.585 5.637 -6.768 1.339 -0.324 H17 TG8 54 TG8 H18 H18 H 0 1 N N N 0.496 -32.311 6.440 1.423 1.494 -1.380 H18 TG8 55 TG8 H19 H19 H 0 1 N N N -1.339 -31.730 3.147 -1.035 3.168 0.955 H19 TG8 56 TG8 H20 H20 H 0 1 N N N 1.970 -36.476 6.203 4.707 5.054 -1.464 H20 TG8 57 TG8 H21 H21 H 0 1 N N N 0.804 -37.489 1.966 0.849 7.616 1.068 H21 TG8 58 TG8 H22 H22 H 0 1 N N N -0.591 -36.662 1.775 2.265 8.346 0.534 H22 TG8 59 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TG8 N6 C6 SING N N 1 TG8 N7 C8 DOUB Y N 2 TG8 N7 C5 SING Y N 3 TG8 C6 C5 DOUB Y N 4 TG8 C6 N1 SING Y N 5 TG8 O2A PA DOUB N N 6 TG8 C8 N9 SING Y N 7 TG8 C5 C4 SING Y N 8 TG8 O2B PB DOUB N N 9 TG8 O3B PB SING N N 10 TG8 N1 C2 DOUB Y N 11 TG8 PB O1A SING N N 12 TG8 PB O1B SING N N 13 TG8 O1A PA SING N N 14 TG8 PA O3A SING N N 15 TG8 PA "O5'" SING N N 16 TG8 N9 C4 SING Y N 17 TG8 N9 "C1'" SING N N 18 TG8 "O2'" "C2'" SING N N 19 TG8 C4 N3 DOUB Y N 20 TG8 "C2'" "C1'" SING N N 21 TG8 "C2'" "C3'" SING N N 22 TG8 "O5'" "C5'" SING N N 23 TG8 C2 N3 SING Y N 24 TG8 "C1'" "O4'" SING N N 25 TG8 CA2 CA3 DOUB Y N 26 TG8 CA2 CA1 SING Y N 27 TG8 CA3 CA4 SING Y N 28 TG8 "O4'" "C4'" SING N N 29 TG8 "C3'" "C4'" SING N N 30 TG8 "C3'" "O3'" SING N N 31 TG8 "C5'" "C4'" SING N N 32 TG8 OA CA DOUB N N 33 TG8 CA CA1 SING N N 34 TG8 CA "O3'" SING N N 35 TG8 CA1 CA6 DOUB Y N 36 TG8 CA4 CA5 DOUB Y N 37 TG8 CA6 CA5 SING Y N 38 TG8 CA6 NA1 SING N N 39 TG8 NA1 CA7 SING N N 40 TG8 CA7 H1 SING N N 41 TG8 CA7 H2 SING N N 42 TG8 CA7 H3 SING N N 43 TG8 NA1 H4 SING N N 44 TG8 CA5 H5 SING N N 45 TG8 CA4 H6 SING N N 46 TG8 CA3 H7 SING N N 47 TG8 CA2 H8 SING N N 48 TG8 "C3'" H9 SING N N 49 TG8 "C2'" H10 SING N N 50 TG8 "O2'" H11 SING N N 51 TG8 "C4'" H12 SING N N 52 TG8 "C5'" H13 SING N N 53 TG8 "C5'" H14 SING N N 54 TG8 O3A H15 SING N N 55 TG8 O3B H16 SING N N 56 TG8 O1B H17 SING N N 57 TG8 "C1'" H18 SING N N 58 TG8 C8 H19 SING N N 59 TG8 C2 H20 SING N N 60 TG8 N6 H21 SING N N 61 TG8 N6 H22 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TG8 InChI InChI 1.03 "InChI=1S/C18H22N6O11P2/c1-20-10-5-3-2-4-9(10)18(26)34-14-11(6-32-37(30,31)35-36(27,28)29)33-17(13(14)25)24-8-23-12-15(19)21-7-22-16(12)24/h2-5,7-8,11,13-14,17,20,25H,6H2,1H3,(H,30,31)(H2,19,21,22)(H2,27,28,29)/t11-,13-,14-,17-/m1/s1" TG8 InChIKey InChI 1.03 ANMCUTJZONROBG-LSCFUAHRSA-N TG8 SMILES_CANONICAL CACTVS 3.385 "CNc1ccccc1C(=O)O[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO[P](O)(=O)O[P](O)(O)=O)n3cnc4c(N)ncnc34" TG8 SMILES CACTVS 3.385 "CNc1ccccc1C(=O)O[CH]2[CH](O)[CH](O[CH]2CO[P](O)(=O)O[P](O)(O)=O)n3cnc4c(N)ncnc34" TG8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1ccccc1C(=O)O[C@@H]2[C@H](O[C@H]([C@@H]2O)n3cnc4c3ncnc4N)COP(=O)(O)OP(=O)(O)O" TG8 SMILES "OpenEye OEToolkits" 2.0.7 "CNc1ccccc1C(=O)OC2C(OC(C2O)n3cnc4c3ncnc4N)COP(=O)(O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id TG8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-[[oxidanyl(phosphonooxy)phosphoryl]oxymethyl]oxolan-3-yl] 2-(methylamino)benzoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TG8 "Create component" 2020-12-22 PDBE TG8 "Initial release" 2021-06-09 RCSB ##