data_TGB # _chem_comp.id TGB _chem_comp.name "[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-[2-(methylamino)phenyl]carbonyloxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-sulfanyl-phosphinic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H23 N6 O13 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-22 _chem_comp.pdbx_modified_date 2021-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 656.394 _chem_comp.one_letter_code ? _chem_comp.three_letter_code TGB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7BDJ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TGB C13 C1 C 0 1 N N R 0.121 -30.500 5.231 -3.446 -0.730 0.128 C13 TGB 1 TGB C15 C2 C 0 1 N N R -0.001 -31.840 5.348 -2.419 -1.737 -0.433 C15 TGB 2 TGB C17 C3 C 0 1 Y N N -0.252 -32.690 3.065 -2.140 -3.683 1.150 C17 TGB 3 TGB C20 C4 C 0 1 Y N N 0.588 -36.136 3.202 -4.339 -6.225 -0.020 C20 TGB 4 TGB C28 C5 C 0 1 N N N -2.616 -29.699 6.574 -0.154 0.797 0.887 C28 TGB 5 TGB C01 C6 C 0 1 N N N 5.037 -30.771 10.562 -6.692 5.289 1.994 C01 TGB 6 TGB C03 C7 C 0 1 Y N N 4.402 -31.126 8.126 -5.494 4.469 -0.006 C03 TGB 7 TGB C04 C8 C 0 1 Y N N 5.510 -31.941 7.829 -6.005 5.538 -0.733 C04 TGB 8 TGB C05 C9 C 0 1 Y N N 5.504 -32.747 6.698 -5.637 5.717 -2.050 C05 TGB 9 TGB C06 C10 C 0 1 Y N N 4.394 -32.747 5.855 -4.758 4.834 -2.660 C06 TGB 10 TGB C07 C11 C 0 1 Y N N 3.290 -31.933 6.154 -4.241 3.769 -1.957 C07 TGB 11 TGB C08 C12 C 0 1 Y N N 3.285 -31.121 7.283 -4.599 3.577 -0.619 C08 TGB 12 TGB C09 C13 C 0 1 N N N 2.045 -30.201 7.623 -4.050 2.440 0.139 C09 TGB 13 TGB C12 C14 C 0 1 N N S -0.234 -30.123 6.743 -2.616 0.547 0.388 C12 TGB 14 TGB C19 C15 C 0 1 Y N N 0.278 -34.761 3.280 -3.522 -5.133 0.317 C19 TGB 15 TGB C23 C16 C 0 1 Y N N 1.035 -36.191 5.482 -5.167 -5.013 -1.801 C23 TGB 16 TGB C25 C17 C 0 1 Y N N 0.367 -34.145 4.512 -3.591 -3.980 -0.484 C25 TGB 17 TGB C27 C18 C 0 1 N N R -1.448 -30.718 6.906 -1.185 0.160 -0.047 C27 TGB 18 TGB N02 N1 N 0 1 N N N 4.420 -30.269 9.336 -5.863 4.287 1.320 N02 TGB 19 TGB N16 N2 N 0 1 Y N N 0.014 -32.864 4.326 -2.705 -3.086 0.062 N16 TGB 20 TGB N18 N3 N 0 1 Y N N -0.103 -33.848 2.412 -2.620 -4.884 1.298 N18 TGB 21 TGB N21 N4 N 0 1 N N N 0.504 -36.827 1.896 -4.314 -7.386 0.733 N21 TGB 22 TGB N22 N5 N 0 1 Y N N 0.962 -36.815 4.323 -5.135 -6.117 -1.078 N22 TGB 23 TGB N24 N6 N 0 1 Y N N 0.748 -34.879 5.605 -4.420 -3.965 -1.523 N24 TGB 24 TGB O10 O1 O 0 1 N N N 2.206 -29.074 7.851 -4.444 2.215 1.267 O10 TGB 25 TGB O11 O2 O 0 1 N N N 0.713 -30.740 7.643 -3.112 1.649 -0.417 O11 TGB 26 TGB O14 O3 O 0 1 N N N 1.405 -30.079 4.812 -4.472 -0.473 -0.833 O14 TGB 27 TGB O26 O4 O 0 1 N N N -1.438 -31.950 5.936 -1.143 -1.280 0.065 O26 TGB 28 TGB O29 O5 O 0 1 N N N -2.774 -29.604 5.176 1.162 0.523 0.401 O29 TGB 29 TGB O31 O6 O 0 1 N N N -3.770 -28.648 3.042 2.485 0.594 2.549 O31 TGB 30 TGB O32 O7 O 0 1 N N N -3.169 -27.048 4.811 2.544 2.652 1.088 O32 TGB 31 TGB O33 O8 O 0 1 N N N -5.248 -28.547 5.137 3.790 0.443 0.394 O33 TGB 32 TGB O35 O9 O 0 1 N N N -7.371 -27.149 5.573 5.451 -1.106 1.717 O35 TGB 33 TGB O36 O10 O 0 1 N N N -7.341 -28.671 3.638 5.789 1.393 1.607 O36 TGB 34 TGB O37 O11 O 0 1 N N N -5.915 -26.494 3.569 6.235 0.074 -0.498 O37 TGB 35 TGB O39 O12 O 0 1 N N N -7.946 -24.877 4.443 8.566 -0.997 0.077 O39 TGB 36 TGB O40 O13 O 0 1 N N N -6.783 -24.456 1.949 8.333 1.473 -0.386 O40 TGB 37 TGB P30 P1 P 0 1 N N N -3.720 -28.430 4.518 2.495 1.043 1.139 P30 TGB 38 TGB P34 P2 P 0 1 N N N -6.531 -27.730 4.480 5.326 0.227 0.822 P34 TGB 39 TGB P38 P3 P 0 1 N N N -6.520 -24.913 3.564 7.819 0.142 -0.780 P38 TGB 40 TGB S41 S1 S 0 1 N N N -5.224 -23.721 4.365 8.183 -0.174 -2.844 S41 TGB 41 TGB H1 H1 H 0 1 N N N -0.658 -30.076 4.580 -3.877 -1.101 1.058 H1 TGB 42 TGB H2 H2 H 0 1 N N N 0.674 -32.177 6.148 -2.428 -1.722 -1.523 H2 TGB 43 TGB H3 H3 H 0 1 N N N -0.548 -31.754 2.614 -1.399 -3.229 1.791 H3 TGB 44 TGB H4 H4 H 0 1 N N N -2.366 -28.709 6.983 -0.312 1.875 0.921 H4 TGB 45 TGB H5 H5 H 0 1 N N N -3.553 -30.056 7.025 -0.265 0.382 1.889 H5 TGB 46 TGB H6 H6 H 0 1 N N N 4.960 -30.008 11.351 -6.174 6.248 1.994 H6 TGB 47 TGB H7 H7 H 0 1 N N N 4.519 -31.686 10.885 -7.641 5.389 1.468 H7 TGB 48 TGB H8 H8 H 0 1 N N N 6.097 -30.997 10.373 -6.877 4.976 3.022 H8 TGB 49 TGB H9 H9 H 0 1 N N N 6.369 -31.940 8.484 -6.690 6.229 -0.266 H9 TGB 50 TGB H10 H10 H 0 1 N N N 6.356 -33.371 6.473 -6.036 6.549 -2.610 H10 TGB 51 TGB H11 H11 H 0 1 N N N 4.383 -33.372 4.974 -4.481 4.981 -3.693 H11 TGB 52 TGB H12 H12 H 0 1 N N N 2.432 -31.937 5.498 -3.557 3.085 -2.437 H12 TGB 53 TGB H13 H13 H 0 1 N N N -0.262 -29.029 6.859 -2.636 0.807 1.447 H13 TGB 54 TGB H14 H14 H 0 1 N N N 1.333 -36.747 6.359 -5.829 -4.967 -2.652 H14 TGB 55 TGB H15 H15 H 0 1 N N N -1.586 -31.082 7.935 -1.005 0.468 -1.077 H15 TGB 56 TGB H16 H16 H 0 1 N N N 4.903 -29.428 9.090 -5.572 3.496 1.800 H16 TGB 57 TGB H17 H17 H 0 1 N N N 0.754 -37.788 2.010 -3.727 -7.453 1.503 H17 TGB 58 TGB H18 H18 H 0 1 N N N -0.431 -36.765 1.546 -4.882 -8.134 0.490 H18 TGB 59 TGB H19 H19 H 0 1 N N N 1.423 -29.131 4.750 -4.986 -1.255 -1.078 H19 TGB 60 TGB H20 H20 H 0 1 N N N -2.969 -26.606 3.994 2.552 3.017 0.193 H20 TGB 61 TGB H21 H21 H 0 1 N N N -8.254 -27.495 5.513 5.165 -1.912 1.265 H21 TGB 62 TGB H22 H22 H 0 1 N N N -8.660 -24.604 3.878 8.278 -1.897 -0.129 H22 TGB 63 TGB H23 H23 H 0 1 N N N -4.952 -22.916 3.381 9.523 -0.090 -2.931 H23 TGB 64 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TGB N21 C20 SING N N 1 TGB O40 P38 DOUB N N 2 TGB N18 C17 DOUB Y N 3 TGB N18 C19 SING Y N 4 TGB O31 P30 DOUB N N 5 TGB C17 N16 SING Y N 6 TGB C20 C19 DOUB Y N 7 TGB C20 N22 SING Y N 8 TGB C19 C25 SING Y N 9 TGB P38 O37 SING N N 10 TGB P38 S41 SING N N 11 TGB P38 O39 SING N N 12 TGB O37 P34 SING N N 13 TGB O36 P34 DOUB N N 14 TGB N22 C23 DOUB Y N 15 TGB N16 C25 SING Y N 16 TGB N16 C15 SING N N 17 TGB P34 O33 SING N N 18 TGB P34 O35 SING N N 19 TGB C25 N24 DOUB Y N 20 TGB P30 O32 SING N N 21 TGB P30 O33 SING N N 22 TGB P30 O29 SING N N 23 TGB O14 C13 SING N N 24 TGB O29 C28 SING N N 25 TGB C13 C15 SING N N 26 TGB C13 C12 SING N N 27 TGB C15 O26 SING N N 28 TGB C23 N24 SING Y N 29 TGB C06 C07 DOUB Y N 30 TGB C06 C05 SING Y N 31 TGB O26 C27 SING N N 32 TGB C07 C08 SING Y N 33 TGB C28 C27 SING N N 34 TGB C05 C04 DOUB Y N 35 TGB C12 C27 SING N N 36 TGB C12 O11 SING N N 37 TGB C08 C09 SING N N 38 TGB C08 C03 DOUB Y N 39 TGB C09 O11 SING N N 40 TGB C09 O10 DOUB N N 41 TGB C04 C03 SING Y N 42 TGB C03 N02 SING N N 43 TGB N02 C01 SING N N 44 TGB C13 H1 SING N N 45 TGB C15 H2 SING N N 46 TGB C17 H3 SING N N 47 TGB C28 H4 SING N N 48 TGB C28 H5 SING N N 49 TGB C01 H6 SING N N 50 TGB C01 H7 SING N N 51 TGB C01 H8 SING N N 52 TGB C04 H9 SING N N 53 TGB C05 H10 SING N N 54 TGB C06 H11 SING N N 55 TGB C07 H12 SING N N 56 TGB C12 H13 SING N N 57 TGB C23 H14 SING N N 58 TGB C27 H15 SING N N 59 TGB N02 H16 SING N N 60 TGB N21 H17 SING N N 61 TGB N21 H18 SING N N 62 TGB O14 H19 SING N N 63 TGB O32 H20 SING N N 64 TGB O35 H21 SING N N 65 TGB O39 H22 SING N N 66 TGB S41 H23 SING N N 67 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TGB InChI InChI 1.03 "InChI=1S/C18H23N6O13P3S/c1-20-10-5-3-2-4-9(10)18(26)35-14-11(6-33-38(27,28)36-39(29,30)37-40(31,32)41)34-17(13(14)25)24-8-23-12-15(19)21-7-22-16(12)24/h2-5,7-8,11,13-14,17,20,25H,6H2,1H3,(H,27,28)(H,29,30)(H2,19,21,22)(H2,31,32,41)/t11-,13-,14-,17-/m1/s1" TGB InChIKey InChI 1.03 MAHRZZRRCDZDJN-LSCFUAHRSA-N TGB SMILES_CANONICAL CACTVS 3.385 "CNc1ccccc1C(=O)O[C@H]2[C@@H](O)[C@@H](O[C@@H]2CO[P](O)(=O)O[P](O)(=O)O[P](O)(S)=O)n3cnc4c(N)ncnc34" TGB SMILES CACTVS 3.385 "CNc1ccccc1C(=O)O[CH]2[CH](O)[CH](O[CH]2CO[P](O)(=O)O[P](O)(=O)O[P](O)(S)=O)n3cnc4c(N)ncnc34" TGB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1ccccc1C(=O)O[C@@H]2[C@H](O[C@H]([C@@H]2O)n3cnc4c3ncnc4N)COP(=O)(O)OP(=O)(O)OP(=O)(O)S" TGB SMILES "OpenEye OEToolkits" 2.0.7 "CNc1ccccc1C(=O)OC2C(OC(C2O)n3cnc4c3ncnc4N)COP(=O)(O)OP(=O)(O)OP(=O)(O)S" # _pdbx_chem_comp_identifier.comp_id TGB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3-[2-(methylamino)phenyl]carbonyloxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-sulfanyl-phosphinic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TGB "Create component" 2020-12-22 PDBE TGB "Initial release" 2021-06-09 RCSB ##