data_TGP # _chem_comp.id TGP _chem_comp.name ;5'-THIO-2'-DEOXY-GUANOSINE PHOSPHONIC ACID ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N5 O6 P S" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-12-05 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 363.287 _chem_comp.one_letter_code G _chem_comp.three_letter_code TGP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal TGP "S5'" S5* S 0 1 N N N 24.555 1.169 34.295 2.414 -1.188 -3.807 "S5'" TGP 1 TGP N9 N9 N 0 1 Y N N 22.296 -1.610 31.995 1.818 1.923 -0.049 N9 TGP 2 TGP C4 C4 C 0 1 Y N N 21.520 -2.740 31.903 1.882 2.959 0.840 C4 TGP 3 TGP N3 N3 N 0 1 N N N 20.171 -2.772 31.826 2.225 2.866 2.144 N3 TGP 4 TGP C2 C2 C 0 1 N N N 19.715 -4.004 31.751 2.203 4.026 2.765 C2 TGP 5 TGP N2 N2 N 0 1 N N N 18.409 -4.218 31.650 2.519 4.145 4.093 N2 TGP 6 TGP N1 N1 N 0 1 N N N 20.514 -5.116 31.762 1.853 5.233 2.115 N1 TGP 7 TGP C6 C6 C 0 1 N N N 21.906 -5.101 31.828 1.494 5.351 0.765 C6 TGP 8 TGP O6 O6 O 0 1 N N N 22.535 -6.160 31.802 1.191 6.394 0.200 O6 TGP 9 TGP C5 C5 C 0 1 Y N N 22.408 -3.795 31.907 1.528 4.070 0.114 C5 TGP 10 TGP N7 N7 N 0 1 Y N N 23.719 -3.339 31.997 1.247 3.767 -1.185 N7 TGP 11 TGP C8 C8 C 0 1 Y N N 23.605 -2.039 32.043 1.431 2.463 -1.253 C8 TGP 12 TGP "C2'" C2* C 0 1 N N N 21.597 0.293 33.450 0.878 -0.312 0.578 "C2'" TGP 13 TGP "C5'" C5* C 0 1 N N N 24.354 1.986 32.713 1.348 -1.500 -2.377 "C5'" TGP 14 TGP "C4'" C4* C 0 1 N N S 22.935 1.823 32.215 2.156 -1.432 -1.088 "C4'" TGP 15 TGP "O4'" O4* O 0 1 N N N 22.821 0.587 31.475 2.678 -0.093 -0.958 "O4'" TGP 16 TGP "C1'" C1* C 0 1 N N R 21.816 -0.233 32.040 2.101 0.516 0.211 "C1'" TGP 17 TGP "C3'" C3* C 0 1 N N S 21.849 1.779 33.286 1.309 -1.697 0.152 "C3'" TGP 18 TGP "O3'" O3* O 0 1 N N N 20.673 2.419 32.778 2.127 -2.250 1.180 "O3'" TGP 19 TGP OP3 O3P O 0 1 N Y N ? ? ? 1.978 -0.920 -6.807 OP3 TGP 20 TGP P P P 0 1 N N N ? ? ? 1.149 -1.320 -5.471 P TGP 21 TGP OP1 O1P O 0 1 N N N ? ? ? 0.511 -2.680 -5.568 OP1 TGP 22 TGP OP2 O2P O 0 1 N N N ? ? ? 0.058 -0.121 -5.397 OP2 TGP 23 TGP H21 1H2 H 0 1 N N N 18.211 -5.197 31.602 1.954 4.733 4.661 H21 TGP 24 TGP H22 2H2 H 0 1 N N N 17.716 -3.497 31.625 3.302 3.639 4.438 H22 TGP 25 TGP H1 H1 H 0 1 N N N 20.064 -6.008 31.719 1.862 6.083 2.672 H1 TGP 26 TGP H8 H8 H 0 1 N N N 24.449 -1.369 32.112 1.302 1.855 -2.139 H8 TGP 27 TGP "H2'" 1H2* H 0 1 N N N 20.579 0.087 33.811 0.008 0.008 -0.009 "H2'" TGP 28 TGP "H2''" 2H2* H 0 0 N N N 22.249 -0.180 34.199 0.635 -0.225 1.641 "H2''" TGP 29 TGP "H5'" 1H5* H 0 1 N N N 24.576 3.057 32.828 0.551 -0.755 -2.357 "H5'" TGP 30 TGP "H5''" 2H5* H 0 0 N N N 25.043 1.533 31.985 0.894 -2.488 -2.480 "H5''" TGP 31 TGP "H4'" H4* H 0 1 N N N 22.763 2.726 31.611 3.008 -2.117 -1.157 "H4'" TGP 32 TGP "H1'" H1* H 0 1 N N N 20.854 -0.213 31.506 2.853 0.503 1.007 "H1'" TGP 33 TGP "H3'" H3* H 0 1 N N N 22.122 2.279 34.227 0.475 -2.383 -0.018 "H3'" TGP 34 TGP "HO3'" H3T H 0 0 N Y N 20.057 2.561 33.488 2.928 -1.706 1.218 "HO3'" TGP 35 TGP HOP3 3HOP H 0 0 N N N ? ? ? 1.551 -1.044 -7.682 HOP3 TGP 36 TGP HOP2 2HOP H 0 0 N N N ? ? ? -0.679 -0.114 -6.044 HOP2 TGP 37 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal TGP "S5'" "C5'" SING N N 1 TGP "S5'" P SING N N 2 TGP N9 C4 SING Y N 3 TGP N9 C8 SING Y N 4 TGP N9 "C1'" SING N N 5 TGP C4 N3 SING N N 6 TGP C4 C5 DOUB Y N 7 TGP N3 C2 DOUB N N 8 TGP C2 N2 SING N N 9 TGP C2 N1 SING N N 10 TGP N2 H21 SING N N 11 TGP N2 H22 SING N N 12 TGP N1 C6 SING N N 13 TGP N1 H1 SING N N 14 TGP C6 O6 DOUB N N 15 TGP C6 C5 SING N N 16 TGP C5 N7 SING Y N 17 TGP N7 C8 DOUB Y N 18 TGP C8 H8 SING N N 19 TGP "C2'" "C1'" SING N N 20 TGP "C2'" "C3'" SING N N 21 TGP "C2'" "H2'" SING N N 22 TGP "C2'" "H2''" SING N N 23 TGP "C5'" "C4'" SING N N 24 TGP "C5'" "H5'" SING N N 25 TGP "C5'" "H5''" SING N N 26 TGP "C4'" "O4'" SING N N 27 TGP "C4'" "C3'" SING N N 28 TGP "C4'" "H4'" SING N N 29 TGP "O4'" "C1'" SING N N 30 TGP "C1'" "H1'" SING N N 31 TGP "C3'" "O3'" SING N N 32 TGP "C3'" "H3'" SING N N 33 TGP "O3'" "HO3'" SING N N 34 TGP OP3 P SING N N 35 TGP OP3 HOP3 SING N N 36 TGP P OP1 DOUB N N 37 TGP P OP2 SING N N 38 TGP OP2 HOP2 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor TGP SMILES ACDLabs 10.04 "O=P(O)(O)SCC3OC(n2cnc1c2N=C(N)NC1=O)CC3O" TGP SMILES_CANONICAL CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[C@H]3C[C@H](O)[C@@H](CS[P](O)(O)=O)O3" TGP SMILES CACTVS 3.341 "NC1=Nc2n(cnc2C(=O)N1)[CH]3C[CH](O)[CH](CS[P](O)(O)=O)O3" TGP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CSP(=O)(O)O)O)N=C(NC2=O)N" TGP SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(O3)CSP(=O)(O)O)O)N=C(NC2=O)N" TGP InChI InChI 1.03 "InChI=1S/C10H14N5O6PS/c11-10-13-8-7(9(17)14-10)12-3-15(8)6-1-4(16)5(21-6)2-23-22(18,19)20/h3-6,16H,1-2H2,(H2,18,19,20)(H3,11,13,14,17)/t4-,5+,6+/m0/s1" TGP InChIKey InChI 1.03 AHOKECUHLPOZOT-KVQBGUIXSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier TGP "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-5'-S-phosphono-5'-thioguanosine" TGP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3-hydroxy-oxolan-2-yl]methylsulfanylphosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site TGP "Create component" 2001-12-05 RCSB TGP "Modify descriptor" 2011-06-04 RCSB #