data_THD
#

_chem_comp.id                                   THD
_chem_comp.name                                 
;2-[3-[(4-AMINO-2-METHYL-5-PYRIMIDINYL)METHYL]-2-(1,2-DIHYDROXYETHYL)-4-METHYL-1,3-THIAZOL-3-IUM-5-YL]ETHYL TRIHYDROGEN
DIPHOSPHATE
;

_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C14 H22 N4 O9 P2 S"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "({ALPHA,BETA}-DIHYDROXYETHYL)-THIAMIN DIPHOSPHATE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2001-11-09
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       484.358
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    THD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1GPU
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 EBI
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
THD  "N1'"   "N1'"   N  0  1  Y  N  N  -3.041  61.454  19.848   1.428   1.481   5.541  "N1'"   THD   1  
THD  "C2'"   "C2'"   C  0  1  Y  N  N  -2.184  60.470  20.188   2.050   0.833   6.505  "C2'"   THD   2  
THD  CM2     CM2     C  0  1  N  N  N  -0.873  60.838  20.682   2.653   1.615   7.643  CM2     THD   3  
THD  "N3'"   "N3'"   N  0  1  Y  N  N  -2.532  59.196  20.071   2.164  -0.479   6.498  "N3'"   THD   4  
THD  "C4'"   "C4'"   C  0  1  Y  N  N  -3.803  58.840  19.598   1.639  -1.201   5.512  "C4'"   THD   5  
THD  "N4'"   "N4'"   N  0  1  N  N  N  -4.019  57.528  19.535   1.757  -2.581   5.511  "N4'"   THD   6  
THD  "C5'"   "C5'"   C  0  1  Y  N  N  -4.775  59.864  19.219   0.974  -0.545   4.475  "C5'"   THD   7  
THD  "C6'"   "C6'"   C  0  1  Y  N  N  -4.314  61.147  19.373   0.884   0.832   4.522  "C6'"   THD   8  
THD  "C7'"   "C7'"   C  0  1  N  N  N  -6.195  59.594  18.689   0.369  -1.320   3.333  "C7'"   THD   9  
THD  N3      N3      N  0  1  N  N  N  -6.112  58.680  17.427  -0.262  -0.391   2.393  N3      THD  10  
THD  C2      C2      C  0  1  N  N  N  -6.228  57.285  17.358  -1.577   0.052   2.586  C2      THD  11  
THD  S1      S1      S  0  1  N  N  N  -5.973  56.722  15.756  -1.793   1.127   1.176  S1      THD  12  
THD  C5      C5      C  0  1  N  N  N  -5.752  58.299  15.189  -0.178   0.909   0.448  C5      THD  13  
THD  C4      C4      C  0  1  N  N  N  -5.856  59.211  16.208   0.409   0.067   1.292  C4      THD  14  
THD  CM4     CM4     C  0  1  N  N  N  -5.708  60.684  16.020   1.823  -0.385   1.035  CM4     THD  15  
THD  C6      C6      C  0  1  N  N  N  -5.468  58.595  13.730   0.379   1.526  -0.809  C6      THD  16  
THD  C7      C7      C  0  1  N  N  N  -5.621  57.464  12.801   0.070   0.619  -2.002  C7      THD  17  
THD  O7      O7      O  0  1  N  N  N  -4.798  57.778  11.677   0.598   1.203  -3.194  O7      THD  18  
THD  PA      PA      P  0  1  N  N  R  -3.699  56.763  11.303   0.239   0.202  -4.402  PA      THD  19  
THD  O1A     O1A     O  0  1  N  N  N  -2.538  56.617  12.250  -1.358   0.038  -4.506  O1A     THD  20  
THD  O2A     O2A     O  0  1  N  N  N  -3.433  57.289   9.996   0.855  -1.119  -4.147  O2A     THD  21  
THD  O3A     O3A     O  0  1  N  N  N  -4.402  55.393  10.820   0.808   0.801  -5.783  O3A     THD  22  
THD  PB      PB      P  0  1  N  N  N  -5.639  54.735  10.025   0.415  -0.244  -6.942  PB      THD  23  
THD  O1B     O1B     O  0  1  N  N  N  -4.978  54.712   8.730  -1.056  -0.388  -6.998  O1B     THD  24  
THD  O2B     O2B     O  0  1  N  N  N  -5.798  53.395  10.573   0.957   0.294  -8.359  O2B     THD  25  
THD  O3B     O3B     O  0  1  N  N  N  -6.849  55.575  10.209   1.082  -1.674  -6.622  O3B     THD  26  
THD  C8      C8      C  0  1  N  N  N  -6.621  56.702  18.419  -2.436  -0.242   3.566  C8      THD  27  
THD  O9      O9      O  0  1  N  N  N  -6.947  57.126  19.553  -2.030  -1.006   4.622  O9      THD  28  
THD  C9      C9      C  0  1  N  N  N  -6.659  55.276  18.152  -3.852   0.268   3.505  C9      THD  29  
THD  O10     O10     O  0  1  N  N  N  -5.679  54.612  18.927  -4.757  -0.837   3.499  O10     THD  30  
THD  HM21    1HM2    H  0  0  N  N  N  -0.164  60.024  20.963   1.915   1.728   8.438  HM21    THD  31  
THD  HM22    2HM2    H  0  0  N  N  N  -0.993  61.530  21.548   3.523   1.083   8.029  HM22    THD  32  
THD  HM23    3HM2    H  0  0  N  N  N  -0.380  61.508  19.939   2.957   2.599   7.287  HM23    THD  33  
THD  "H4'1"  "1H4'"  H  0  0  N  N  N  -5.019  57.248  19.163   2.221  -3.029   6.236  "H4'1"  THD  34  
THD  "H4'2"  "2H4'"  H  0  0  N  N  N  -3.286  56.755  19.821   1.375  -3.100   4.786  "H4'2"  THD  35  
THD  "H6'"   "H6'"   H  0  1  N  N  N  -4.987  61.979  19.107   0.376   1.373   3.737  "H6'"   THD  36  
THD  "H7'1"  "1H7'"  H  0  0  N  N  N  -6.758  60.536  18.491   1.150  -1.881   2.821  "H7'1"  THD  37  
THD  "H7'2"  "2H7'"  H  0  0  N  N  N  -6.865  59.170  19.473  -0.379  -2.011   3.720  "H7'2"  THD  38  
THD  HM41    1HM4    H  0  0  N  N  N  -5.497  61.121  15.016   2.193   0.079   0.121  HM41    THD  39  
THD  HM42    2HM4    H  0  0  N  N  N  -4.922  61.044  16.724   2.456  -0.092   1.873  HM42    THD  40  
THD  HM43    3HM4    H  0  0  N  N  N  -6.623  61.176  16.425   1.844  -1.469   0.926  HM43    THD  41  
THD  H6C1    1H6C    H  0  0  N  N  N  -4.450  59.036  13.625  -0.077   2.503  -0.967  H6C1    THD  42  
THD  H6C2    2H6C    H  0  0  N  N  N  -6.094  59.452  13.389   1.458   1.640  -0.709  H6C2    THD  43  
THD  H7C1    1H7C    H  0  0  N  N  N  -6.681  57.245  12.533   0.526  -0.357  -1.843  H7C1    THD  44  
THD  H7C2    2H7C    H  0  0  N  N  N  -5.394  56.473  13.260  -1.009   0.504  -2.101  H7C2    THD  45  
THD  HO1A    HO1A    H  0  0  N  N  N  -1.861  55.992  12.020  -1.719   0.919  -4.672  HO1A    THD  46  
THD  HO2B    HO2B    H  0  0  N  N  N  -6.527  53.007  10.104   0.701  -0.359  -9.023  HO2B    THD  47  
THD  HO3B    HO3B    H  0  0  N  N  N  -7.578  55.187   9.740   2.039  -1.537  -6.594  HO3B    THD  48  
THD  H9      H9      H  0  1  N  N  N  -7.240  56.691  20.345  -2.075  -0.443   5.407  H9      THD  49  
THD  H9C1    1H9C    H  0  0  N  N  N  -6.555  55.051  17.065  -4.050   0.894   4.375  H9C1    THD  50  
THD  H9C2    2H9C    H  0  0  N  N  N  -7.677  54.848  18.310  -3.989   0.854   2.596  H9C2    THD  51  
THD  H10     H10     H  0  1  N  N  N  -5.704  53.679  18.752  -5.650  -0.468   3.460  H10     THD  52  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
THD  "N1'"  "C2'"   DOUB  Y  N   1  
THD  "N1'"  "C6'"   SING  Y  N   2  
THD  "C2'"  CM2     SING  N  N   3  
THD  "C2'"  "N3'"   SING  Y  N   4  
THD  CM2    HM21    SING  N  N   5  
THD  CM2    HM22    SING  N  N   6  
THD  CM2    HM23    SING  N  N   7  
THD  "N3'"  "C4'"   DOUB  Y  N   8  
THD  "C4'"  "N4'"   SING  N  N   9  
THD  "C4'"  "C5'"   SING  Y  N  10  
THD  "N4'"  "H4'1"  SING  N  N  11  
THD  "N4'"  "H4'2"  SING  N  N  12  
THD  "C5'"  "C6'"   DOUB  Y  N  13  
THD  "C5'"  "C7'"   SING  N  N  14  
THD  "C6'"  "H6'"   SING  N  N  15  
THD  "C7'"  N3      SING  N  N  16  
THD  "C7'"  "H7'1"  SING  N  N  17  
THD  "C7'"  "H7'2"  SING  N  N  18  
THD  N3     C2      SING  N  N  19  
THD  N3     C4      SING  N  N  20  
THD  C2     S1      SING  N  N  21  
THD  C2     C8      DOUB  N  E  22  
THD  S1     C5      SING  N  N  23  
THD  C5     C4      DOUB  N  N  24  
THD  C5     C6      SING  N  N  25  
THD  C4     CM4     SING  N  N  26  
THD  CM4    HM41    SING  N  N  27  
THD  CM4    HM42    SING  N  N  28  
THD  CM4    HM43    SING  N  N  29  
THD  C6     C7      SING  N  N  30  
THD  C6     H6C1    SING  N  N  31  
THD  C6     H6C2    SING  N  N  32  
THD  C7     O7      SING  N  N  33  
THD  C7     H7C1    SING  N  N  34  
THD  C7     H7C2    SING  N  N  35  
THD  O7     PA      SING  N  N  36  
THD  PA     O1A     SING  N  N  37  
THD  PA     O2A     DOUB  N  N  38  
THD  PA     O3A     SING  N  N  39  
THD  O1A    HO1A    SING  N  N  40  
THD  O3A    PB      SING  N  N  41  
THD  PB     O1B     DOUB  N  N  42  
THD  PB     O2B     SING  N  N  43  
THD  PB     O3B     SING  N  N  44  
THD  O2B    HO2B    SING  N  N  45  
THD  O3B    HO3B    SING  N  N  46  
THD  C8     O9      SING  N  N  47  
THD  C8     C9      SING  N  N  48  
THD  O9     H9      SING  N  N  49  
THD  C9     O10     SING  N  N  50  
THD  C9     H9C1    SING  N  N  51  
THD  C9     H9C2    SING  N  N  52  
THD  O10    H10     SING  N  N  53  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
THD  SMILES            ACDLabs               10.04  "O=P(O)(O)OP(=O)(O)OCCC=1S\C(=C(\O)CO)N(C=1C)Cc2cnc(nc2N)C"  
THD  SMILES_CANONICAL  CACTVS                3.341  "Cc1ncc(CN\2C(=C(CCO[P@](O)(=O)O[P](O)(O)=O)SC\2=C(/O)CO)C)c(N)n1"  
THD  SMILES            CACTVS                3.341  "Cc1ncc(CN2C(=C(CCO[P](O)(=O)O[P](O)(O)=O)SC2=C(O)CO)C)c(N)n1"  
THD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "Cc1ncc(c(n1)N)CN\2C(=C(S/C2=C(\CO)/O)CCO[P@@](=O)(O)OP(=O)(O)O)C"  
THD  SMILES            "OpenEye OEToolkits"  1.5.0  "Cc1ncc(c(n1)N)CN2C(=C(SC2=C(CO)O)CCOP(=O)(O)OP(=O)(O)O)C"  
THD  InChI             InChI                 1.03   "InChI=1S/C14H22N4O9P2S/c1-8-12(3-4-26-29(24,25)27-28(21,22)23)30-14(11(20)7-19)18(8)6-10-5-16-9(2)17-13(10)15/h5,19-20H,3-4,6-7H2,1-2H3,(H,24,25)(H2,15,16,17)(H2,21,22,23)/b14-11+"  
THD  InChIKey          InChI                 1.03   LXZUEFPJZTWGEL-SDNWHVSQSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
THD  "SYSTEMATIC NAME"  ACDLabs               10.04  "2-[(2E)-3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-2-(1,2-dihydroxyethylidene)-4-methyl-2,3-dihydro-1,3-thiazol-5-yl]ethyl trihydrogen diphosphate"  
THD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "2-[(2E)-3-[(4-amino-2-methyl-pyrimidin-5-yl)methyl]-2-(1,2-dihydroxyethylidene)-4-methyl-1,3-thiazol-5-yl]ethyl phosphono hydrogen phosphate"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
THD  "Create component"   2001-11-09  EBI   
THD  "Modify descriptor"  2011-06-04  RCSB  
THD  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     THD
_pdbx_chem_comp_synonyms.name        "({ALPHA,BETA}-DIHYDROXYETHYL)-THIAMIN DIPHOSPHATE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##